Wall clock time and date at job start Sun Mar 29 2020 23:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 119.99873 * 2 1 4 4 H 1.07994 * 119.99605 * 202.59013 * 3 2 1 5 5 C 1.38807 * 119.99988 * 22.58911 * 3 2 1 6 6 N 1.31617 * 120.00318 * 11.15633 * 5 3 2 7 7 Si 1.86799 * 119.99869 * 191.15182 * 5 3 2 8 8 H 1.48498 * 109.47241 * 90.00144 * 7 5 3 9 9 H 1.48508 * 109.47158 * 210.00164 * 7 5 3 10 10 H 1.48503 * 109.47151 * 329.99856 * 7 5 3 11 11 C 1.46497 * 119.99871 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47416 * 270.00759 * 11 2 1 13 13 C 1.37814 * 119.90756 * 105.00205 * 12 11 2 14 14 C 1.39705 * 119.89770 * 180.02562 * 13 12 11 15 15 C 1.43196 * 120.14155 * 180.02562 * 14 13 12 16 16 N 6.69664 * 82.32977 * 139.53267 * 2 1 3 17 17 C 1.39959 * 119.71059 * 0.02562 * 14 13 12 18 18 F 1.35101 * 120.09670 * 179.97438 * 17 14 13 19 19 C 1.38138 * 119.81009 * 359.97438 * 17 14 13 20 20 C 1.38545 * 120.09978 * 0.27449 * 19 17 14 21 21 F 1.35092 * 119.85669 * 179.70237 * 20 19 17 22 22 H 1.08986 * 109.47783 * 274.25034 * 1 2 3 23 23 H 1.09004 * 109.46699 * 34.25406 * 1 2 3 24 24 H 1.09004 * 109.46795 * 154.25033 * 1 2 3 25 25 H 0.97003 * 120.00424 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.46912 * 150.00374 * 11 2 1 27 27 H 1.09002 * 109.47374 * 30.01065 * 11 2 1 28 28 H 1.07999 * 120.04724 * 0.02562 * 13 12 11 29 29 H 1.07996 * 119.94912 * 180.02562 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1675 1.2218 -0.3593 5 6 1.5355 2.3419 0.4618 6 7 0.3864 2.2671 1.0991 7 14 2.3400 4.0039 0.1787 8 1 1.8707 4.5675 -1.1125 9 1 1.9735 4.9259 1.2837 10 1 3.8154 3.8395 0.1401 11 6 2.1975 -1.2687 0.0006 12 6 2.4485 -1.7033 1.4215 13 6 1.7094 -2.7309 1.9666 14 6 1.9420 -3.1332 3.2841 15 6 1.1775 -4.2007 3.8555 16 7 0.5712 -5.0491 4.3073 17 6 2.9254 -2.4884 4.0430 18 9 3.1564 -2.8707 5.3180 19 6 3.6591 -1.4598 3.4846 20 6 3.4185 -1.0637 2.1790 21 9 4.1348 -0.0532 1.6398 22 1 -0.3634 0.0762 1.0247 23 1 -0.3633 0.8495 -0.5785 24 1 -0.3633 -0.9257 -0.4465 25 1 -0.0430 3.0749 1.4214 26 1 3.1499 -1.1386 -0.5133 27 1 1.6085 -2.0286 -0.5131 28 1 0.9517 -3.2243 1.3761 29 1 4.4188 -0.9609 4.0681 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237534741.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:06 Heat of formation + Delta-G solvation = -9.911963 kcal Electronic energy + Delta-G solvation = -18008.280690 eV Core-core repulsion = 14761.649772 eV Total energy + Delta-G solvation = -3246.630918 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 252.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.96349 -48.41689 -38.95201 -36.43233 -35.53817 -32.14441 -30.98519 -30.14939 -26.27280 -25.65237 -23.72643 -22.54747 -21.08790 -18.45329 -17.80791 -17.14877 -16.72242 -15.85802 -15.35901 -15.03951 -14.63608 -14.48626 -14.09224 -13.67751 -13.56888 -13.50518 -13.29587 -13.14245 -12.45509 -12.16828 -11.79040 -11.50082 -11.23994 -11.06873 -10.94742 -10.72900 -10.48028 -10.10089 -10.00095 -8.87924 -8.68069 -8.31973 -6.97190 -5.87904 -3.30734 0.72320 1.20555 2.68297 2.93035 3.32327 3.39214 3.40199 3.74209 3.88103 4.03467 4.40797 4.60757 4.77819 5.08417 5.28272 5.38529 5.49108 5.73738 5.87053 5.99550 6.10852 6.16705 6.41292 6.56916 6.61997 6.93395 7.25348 7.51498 7.60570 7.71531 8.22878 9.07127 9.67386 10.14566 11.16011 Molecular weight = 252.08amu Principal moments of inertia in cm(-1) A = 0.027563 B = 0.006915 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.624257 B = 4048.214853 C = 4432.162716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.586 5.586 3 C -0.250 4.250 4 H 0.076 0.924 5 C 0.006 3.994 6 N -0.901 5.901 7 Si 0.906 3.094 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.276 1.276 11 C 0.180 3.820 12 C -0.134 4.134 13 C -0.017 4.017 14 C -0.085 4.085 15 C 0.266 3.734 16 N -0.423 5.423 17 C 0.152 3.848 18 F -0.131 7.131 19 C -0.198 4.198 20 C 0.186 3.814 21 F -0.108 7.108 22 H 0.031 0.969 23 H 0.050 0.950 24 H 0.001 0.999 25 H 0.255 0.745 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.144 0.856 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.227 -7.371 0.852 9.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.306 5.306 3 C -0.380 4.380 4 H 0.094 0.906 5 C -0.194 4.194 6 N -0.544 5.544 7 Si 0.736 3.264 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.201 1.201 11 C 0.052 3.948 12 C -0.140 4.140 13 C -0.038 4.038 14 C -0.090 4.090 15 C -0.049 4.049 16 N -0.099 5.099 17 C 0.129 3.871 18 F -0.109 7.109 19 C -0.218 4.218 20 C 0.165 3.835 21 F -0.086 7.086 22 H 0.049 0.951 23 H 0.069 0.931 24 H 0.020 0.980 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.162 0.838 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.166 -8.454 1.585 9.557 hybrid contribution 0.683 1.567 0.278 1.732 sum 4.849 -6.887 1.863 8.626 Atomic orbital electron populations 1.20908 0.81854 0.96113 0.99662 1.44314 1.02249 1.00340 1.83652 1.19337 0.98593 0.84708 1.35338 0.90619 1.25100 0.97542 0.98866 0.97876 1.70062 1.17597 1.27566 1.39186 0.86224 0.79128 0.83678 0.77416 1.21314 1.21644 1.20142 1.20041 0.97500 0.89193 0.88028 1.21417 0.94470 0.94668 1.03417 1.20754 0.97266 0.94463 0.91350 1.15910 0.99916 0.97662 0.95470 1.25363 0.93263 0.92762 0.93476 1.81207 1.09694 1.11097 1.07906 1.16992 0.95843 0.95220 0.79027 1.91516 1.93565 1.90180 1.35662 1.20865 1.04738 1.00310 0.95877 1.17312 0.90315 0.85566 0.90345 1.91604 1.75258 1.56165 1.85546 0.95086 0.93124 0.98045 0.93455 0.91815 0.92200 0.83821 0.83225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.57 9.01 59.85 0.54 4.11 15 2 N -0.59 -13.24 2.91 -182.50 -0.53 -13.77 15 3 C -0.25 -6.28 8.23 -15.06 -0.12 -6.41 15 4 H 0.08 1.88 7.64 -52.49 -0.40 1.48 15 5 C 0.01 0.14 5.13 -17.43 -0.09 0.06 15 6 N -0.90 -24.77 10.59 55.49 0.59 -24.18 15 7 Si 0.91 20.87 29.57 -169.99 -5.03 15.85 15 8 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 15 11 C 0.18 3.17 5.56 -5.20 -0.03 3.14 15 12 C -0.13 -2.19 5.46 -104.61 -0.57 -2.76 15 13 C -0.02 -0.23 9.37 -39.19 -0.37 -0.60 15 14 C -0.08 -1.22 5.74 -106.78 -0.61 -1.84 15 15 C 0.27 4.05 14.98 -22.46 -0.34 3.71 15 16 N -0.42 -7.04 18.54 41.85 0.78 -6.26 15 17 C 0.15 2.21 7.28 -38.97 -0.28 1.93 15 18 F -0.13 -1.91 16.81 2.25 0.04 -1.87 15 19 C -0.20 -2.90 9.99 -39.50 -0.39 -3.29 15 20 C 0.19 3.15 7.21 -39.30 -0.28 2.87 15 21 F -0.11 -2.05 15.12 2.25 0.03 -2.01 15 22 H 0.03 0.76 7.41 -51.94 -0.38 0.38 15 23 H 0.05 1.24 7.20 -51.93 -0.37 0.87 15 24 H 0.00 0.02 7.84 -51.93 -0.41 -0.39 15 25 H 0.26 6.88 8.31 -40.82 -0.34 6.54 15 26 H 0.06 1.09 7.97 -51.93 -0.41 0.68 15 27 H 0.06 0.89 7.66 -51.93 -0.40 0.50 15 28 H 0.14 1.72 7.99 -52.49 -0.42 1.30 15 29 H 0.15 1.88 8.06 -52.49 -0.42 1.45 15 LS Contribution 272.90 15.07 4.11 4.11 Total: -1.00 -27.95 272.90 -4.92 -32.87 By element: Atomic # 1 Polarization: -3.28 SS G_CDS: -2.36 Total: -5.64 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -2.55 Total: 0.90 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.83 Total: -44.21 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.07 Total: -3.88 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.95 -4.92 -32.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237534741.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.953 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds