Wall clock time and date at job start Sun Mar 29 2020 23:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 119.99873 * 2 1 4 4 H 1.07994 * 119.99605 * 202.59013 * 3 2 1 5 5 C 1.38807 * 119.99988 * 22.58911 * 3 2 1 6 6 N 1.31617 * 120.00318 * 11.15633 * 5 3 2 7 7 Si 1.86799 * 119.99869 * 191.15182 * 5 3 2 8 8 H 1.48498 * 109.47241 * 90.00144 * 7 5 3 9 9 H 1.48508 * 109.47158 * 210.00164 * 7 5 3 10 10 H 1.48503 * 109.47151 * 329.99856 * 7 5 3 11 11 C 1.46497 * 119.99871 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47416 * 270.00759 * 11 2 1 13 13 C 1.37814 * 119.90756 * 105.00205 * 12 11 2 14 14 C 1.39705 * 119.89770 * 180.02562 * 13 12 11 15 15 C 1.43196 * 120.14155 * 180.02562 * 14 13 12 16 16 N 6.69664 * 82.32977 * 139.53267 * 2 1 3 17 17 C 1.39959 * 119.71059 * 0.02562 * 14 13 12 18 18 F 1.35101 * 120.09670 * 179.97438 * 17 14 13 19 19 C 1.38138 * 119.81009 * 359.97438 * 17 14 13 20 20 C 1.38545 * 120.09978 * 0.27449 * 19 17 14 21 21 F 1.35092 * 119.85669 * 179.70237 * 20 19 17 22 22 H 1.08986 * 109.47783 * 274.25034 * 1 2 3 23 23 H 1.09004 * 109.46699 * 34.25406 * 1 2 3 24 24 H 1.09004 * 109.46795 * 154.25033 * 1 2 3 25 25 H 0.97003 * 120.00424 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.46912 * 150.00374 * 11 2 1 27 27 H 1.09002 * 109.47374 * 30.01065 * 11 2 1 28 28 H 1.07999 * 120.04724 * 0.02562 * 13 12 11 29 29 H 1.07996 * 119.94912 * 180.02562 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1675 1.2218 -0.3593 5 6 1.5355 2.3419 0.4618 6 7 0.3864 2.2671 1.0991 7 14 2.3400 4.0039 0.1787 8 1 1.8707 4.5675 -1.1125 9 1 1.9735 4.9259 1.2837 10 1 3.8154 3.8395 0.1401 11 6 2.1975 -1.2687 0.0006 12 6 2.4485 -1.7033 1.4215 13 6 1.7094 -2.7309 1.9666 14 6 1.9420 -3.1332 3.2841 15 6 1.1775 -4.2007 3.8555 16 7 0.5712 -5.0491 4.3073 17 6 2.9254 -2.4884 4.0430 18 9 3.1564 -2.8707 5.3180 19 6 3.6591 -1.4598 3.4846 20 6 3.4185 -1.0637 2.1790 21 9 4.1348 -0.0532 1.6398 22 1 -0.3634 0.0762 1.0247 23 1 -0.3633 0.8495 -0.5785 24 1 -0.3633 -0.9257 -0.4465 25 1 -0.0430 3.0749 1.4214 26 1 3.1499 -1.1386 -0.5133 27 1 1.6085 -2.0286 -0.5131 28 1 0.9517 -3.2243 1.3761 29 1 4.4188 -0.9609 4.0681 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237534741.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:06 Heat of formation + Delta-G solvation = -24.413456 kcal Electronic energy + Delta-G solvation = -18008.909522 eV Core-core repulsion = 14761.649772 eV Total energy + Delta-G solvation = -3247.259750 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 252.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.17558 -49.81342 -40.21937 -37.79119 -37.10693 -33.77281 -32.23263 -31.70601 -27.96520 -27.26728 -24.99523 -23.95242 -22.64954 -19.72775 -19.10957 -18.69644 -18.25353 -17.14067 -16.90269 -16.43361 -16.16824 -15.72867 -15.41570 -15.31633 -14.96160 -14.82054 -14.79858 -14.45613 -13.94401 -13.63941 -13.15051 -12.97535 -12.82587 -12.66165 -12.48576 -12.38027 -12.06690 -11.92173 -11.77843 -10.58648 -10.07772 -9.62197 -8.78116 -7.78192 -5.24272 -0.51700 0.00949 1.45378 1.49282 1.51536 1.58491 1.69093 2.48257 2.58290 2.65276 2.80672 3.33765 3.40354 3.60956 3.85770 3.88051 4.13689 4.48111 4.61260 4.80161 4.86699 4.90620 4.96254 5.06617 5.27965 5.43215 5.66242 5.73458 5.83201 6.29445 6.38127 7.20887 7.90578 8.31522 9.24468 Molecular weight = 252.08amu Principal moments of inertia in cm(-1) A = 0.027563 B = 0.006915 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.624257 B = 4048.214853 C = 4432.162716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.606 5.606 3 C -0.243 4.243 4 H 0.074 0.926 5 C -0.048 4.048 6 N -0.936 5.936 7 Si 0.954 3.046 8 H -0.288 1.288 9 H -0.301 1.301 10 H -0.269 1.269 11 C 0.178 3.822 12 C -0.142 4.142 13 C 0.002 3.998 14 C -0.081 4.081 15 C 0.281 3.719 16 N -0.445 5.445 17 C 0.163 3.837 18 F -0.128 7.128 19 C -0.193 4.193 20 C 0.169 3.831 21 F -0.124 7.124 22 H 0.003 0.997 23 H 0.018 0.982 24 H 0.040 0.960 25 H 0.245 0.755 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.173 0.827 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.914 -9.001 0.913 10.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.327 5.327 3 C -0.373 4.373 4 H 0.092 0.908 5 C -0.243 4.243 6 N -0.583 5.583 7 Si 0.783 3.217 8 H -0.215 1.215 9 H -0.228 1.228 10 H -0.193 1.193 11 C 0.052 3.948 12 C -0.147 4.147 13 C -0.020 4.020 14 C -0.086 4.086 15 C -0.033 4.033 16 N -0.121 5.121 17 C 0.141 3.859 18 F -0.107 7.107 19 C -0.212 4.212 20 C 0.148 3.852 21 F -0.103 7.103 22 H 0.021 0.979 23 H 0.037 0.963 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.112 0.888 28 H 0.190 0.810 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.900 -10.139 1.655 11.382 hybrid contribution 0.575 1.834 0.306 1.946 sum 5.475 -8.306 1.961 10.139 Atomic orbital electron populations 1.20629 0.82214 0.96600 0.97694 1.44352 1.02330 1.01306 1.84729 1.19484 0.98132 0.86007 1.33666 0.90819 1.25638 0.98319 1.01328 0.98985 1.70208 1.19128 1.27181 1.41736 0.85458 0.78715 0.80894 0.76613 1.21493 1.22755 1.19346 1.20153 0.97714 0.87946 0.88967 1.21279 0.95275 0.95877 1.02278 1.20976 0.96501 0.93274 0.91208 1.15910 0.99689 0.97385 0.95620 1.25307 0.92726 0.92376 0.92902 1.81242 1.10405 1.11856 1.08569 1.17054 0.95260 0.94661 0.78939 1.91535 1.93491 1.90069 1.35562 1.20980 1.04963 1.00074 0.95192 1.17657 0.90839 0.85381 0.91339 1.91563 1.75712 1.57081 1.85899 0.97905 0.96348 0.94159 0.94560 0.91562 0.88845 0.80957 0.81218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.67 9.01 127.77 1.15 8.82 15 2 N -0.61 -26.69 2.91 -731.32 -2.13 -28.82 15 3 C -0.24 -12.13 8.23 84.03 0.69 -11.43 15 4 H 0.07 3.63 7.64 -2.91 -0.02 3.61 15 5 C -0.05 -2.52 5.13 84.86 0.44 -2.09 15 6 N -0.94 -52.77 10.59 21.65 0.23 -52.54 15 7 Si 0.95 43.55 29.57 68.60 2.03 45.58 15 8 H -0.29 -13.03 7.11 99.48 0.71 -12.32 15 9 H -0.30 -14.07 7.11 99.48 0.71 -13.37 15 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 11 C 0.18 5.81 5.56 85.63 0.48 6.29 15 12 C -0.14 -4.29 5.46 -19.86 -0.11 -4.40 15 13 C 0.00 0.04 9.37 22.52 0.21 0.25 15 14 C -0.08 -2.08 5.74 -21.26 -0.12 -2.21 15 15 C 0.28 7.74 14.98 88.33 1.32 9.06 15 16 N -0.44 -13.71 18.54 19.01 0.35 -13.36 15 17 C 0.16 4.27 7.28 22.66 0.16 4.44 15 18 F -0.13 -3.38 16.81 44.97 0.76 -2.62 15 19 C -0.19 -5.16 9.99 22.32 0.22 -4.93 15 20 C 0.17 5.39 7.21 22.45 0.16 5.55 15 21 F -0.12 -4.60 15.12 44.97 0.68 -3.92 15 22 H 0.00 0.13 7.41 -2.39 -0.02 0.11 15 23 H 0.02 0.89 7.20 -2.38 -0.02 0.87 15 24 H 0.04 1.42 7.84 -2.39 -0.02 1.40 15 25 H 0.25 13.69 8.31 -92.71 -0.77 12.92 15 26 H 0.07 2.13 7.97 -2.39 -0.02 2.11 15 27 H 0.09 2.40 7.66 -2.39 -0.02 2.38 15 28 H 0.17 3.30 7.99 -2.91 -0.02 3.28 15 29 H 0.17 3.81 8.06 -2.91 -0.02 3.79 15 Total: -1.00 -60.28 272.90 7.72 -52.56 By element: Atomic # 1 Polarization: -7.42 SS G_CDS: 1.19 Total: -6.23 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 4.61 Total: 9.35 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -1.55 Total: -94.71 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 1.44 Total: -6.55 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -60.28 7.72 -52.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237534741.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.146 kcal (2) G-P(sol) polarization free energy of solvation -60.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds