Wall clock time and date at job start Sun Mar 29 2020 23:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00261 * 2 1 4 4 H 1.48501 * 109.47137 * 270.00226 * 3 2 1 5 5 H 1.48503 * 109.47144 * 29.99796 * 3 2 1 6 6 H 1.48493 * 109.47483 * 150.00082 * 3 2 1 7 7 C 1.37881 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00227 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.97438 * 7 2 1 10 10 C 1.50701 * 109.47025 * 179.97438 * 9 7 2 11 11 C 1.38590 * 119.93433 * 90.00040 * 10 9 7 12 12 C 1.37891 * 120.61384 * 179.97438 * 11 10 9 13 13 C 1.38994 * 120.09273 * 0.02562 * 12 11 10 14 14 O 1.35120 * 132.33342 * 179.97438 * 13 12 11 15 15 C 1.35123 * 111.55283 * 179.97438 * 14 13 12 16 16 C 1.38984 * 132.33712 * 180.02562 * 15 14 13 17 17 C 1.37889 * 120.09407 * 179.97438 * 16 15 14 18 18 C 1.38595 * 120.61474 * 0.02562 * 17 16 15 19 19 C 1.37899 * 120.12108 * 359.97438 * 18 17 16 20 20 C 1.39077 * 119.73071 * 0.02562 * 19 18 17 21 21 C 1.40165 * 119.15088 * 359.97438 * 13 12 11 22 22 C 1.37901 * 119.94150 * 269.98184 * 10 9 7 23 23 H 0.97006 * 120.00024 * 359.97438 * 1 2 3 24 24 H 1.09010 * 109.46983 * 60.00423 * 9 7 2 25 25 H 1.09000 * 109.47292 * 300.00313 * 9 7 2 26 26 H 1.08000 * 119.69644 * 359.95921 * 11 10 9 27 27 H 1.07995 * 119.95488 * 179.97438 * 12 11 10 28 28 H 1.08006 * 119.95179 * 359.96846 * 16 15 14 29 29 H 1.08001 * 119.69645 * 180.28515 * 17 16 15 30 30 H 1.08005 * 119.93805 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.13453 * 180.02562 * 19 18 17 32 32 H 1.08003 * 120.13520 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6149 0.0013 11 6 4.2439 -3.2683 -1.1990 12 6 4.7039 -4.5681 -1.2141 13 6 4.9414 -5.2372 -0.0192 14 8 5.3828 -6.4850 0.2528 15 6 5.4620 -6.7043 1.5838 16 6 5.8543 -7.8103 2.3285 17 6 5.8377 -7.7574 3.7062 18 6 5.4313 -6.6069 4.3635 19 6 5.0385 -5.4996 3.6416 20 6 5.0515 -5.5423 2.2515 21 6 4.7078 -4.5736 1.1931 22 6 4.2440 -3.2624 1.1969 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6797 0.8896 25 1 3.8745 -0.6808 -0.8905 26 1 4.0609 -2.7548 -2.1313 27 1 4.8792 -5.0672 -2.1556 28 1 6.1725 -8.7126 1.8272 29 1 6.1483 -8.6190 4.2785 30 1 5.4230 -6.5773 5.4431 31 1 4.7222 -4.6028 4.1536 32 1 4.0655 -2.7531 2.1325 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250056311.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:06 Heat of formation + Delta-G solvation = 32.880422 kcal Electronic energy + Delta-G solvation = -16919.032939 eV Core-core repulsion = 14196.194417 eV Total energy + Delta-G solvation = -2722.838522 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 252.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.18005 -38.20401 -37.47150 -33.33684 -32.21521 -31.27761 -30.35499 -28.93653 -27.42505 -23.88322 -23.28310 -22.31743 -20.93710 -20.44092 -18.10004 -16.93401 -16.83172 -16.20133 -15.96482 -14.91225 -14.66035 -14.13432 -13.94614 -13.81717 -13.39305 -13.01241 -12.51190 -12.38134 -12.15857 -12.02526 -11.73144 -11.47678 -11.11482 -10.70106 -10.43706 -10.20647 -10.06392 -9.63606 -9.42752 -8.83959 -8.63280 -7.92430 -7.63040 -6.12048 -4.12123 0.82730 1.19650 1.92701 2.06018 2.76652 3.25134 3.33521 3.35446 3.69627 4.21052 4.36975 4.54423 4.66952 4.86600 4.99992 5.18573 5.21203 5.25273 5.43202 5.55579 5.73604 5.81178 5.83161 6.04409 6.15171 6.26464 6.38564 6.42957 6.61544 6.69825 6.78310 6.80113 6.91116 7.10647 7.41773 7.47755 7.63359 8.43697 8.93041 9.47553 11.00791 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.033136 B = 0.005055 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.798012 B = 5537.508719 C = 6016.287116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.517 4.517 8 H 0.074 0.926 9 C 0.017 3.983 10 C -0.045 4.045 11 C -0.079 4.079 12 C -0.117 4.117 13 C 0.056 3.944 14 O -0.206 6.206 15 C 0.080 3.920 16 C -0.120 4.120 17 C -0.093 4.093 18 C -0.144 4.144 19 C -0.064 4.064 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.065 4.065 23 H 0.265 0.735 24 H 0.030 0.970 25 H 0.027 0.973 26 H 0.137 0.863 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.467 -11.929 4.873 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.555 4.555 8 H 0.092 0.908 9 C -0.020 4.020 10 C -0.045 4.045 11 C -0.097 4.097 12 C -0.135 4.135 13 C 0.011 3.989 14 O -0.111 6.111 15 C 0.034 3.966 16 C -0.139 4.139 17 C -0.111 4.111 18 C -0.162 4.162 19 C -0.082 4.082 20 C -0.113 4.113 21 C -0.125 4.125 22 C -0.084 4.084 23 H 0.075 0.925 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.155 0.845 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.363 -11.983 4.680 17.842 hybrid contribution 0.173 0.894 0.019 0.911 sum 12.536 -11.089 4.699 17.384 Atomic orbital electron populations 1.69898 1.06293 1.27062 1.50377 1.24994 0.94731 0.99030 0.94387 0.86810 0.80397 0.83641 0.78704 1.20079 1.21206 1.18900 1.20932 0.88157 0.94751 1.51640 0.90763 1.18791 0.97528 0.87969 0.97673 1.20211 0.94272 0.98520 0.91478 1.20961 0.97056 0.92669 0.99002 1.19912 1.04859 0.94634 0.94111 1.19460 1.01323 0.82514 0.95575 1.83974 1.73920 1.30658 1.22591 1.19599 1.00043 0.95872 0.81130 1.19928 1.04863 0.96168 0.92905 1.20864 0.99141 0.98394 0.92677 1.20995 1.02088 0.93156 1.00001 1.20579 0.97430 0.98934 0.91245 1.19446 1.04211 0.93745 0.93920 1.19300 1.06337 0.95553 0.91313 1.20411 0.97532 0.91430 0.98980 0.92522 0.95209 0.95475 0.84531 0.85437 0.85184 0.84931 0.85307 0.85274 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 7 C -0.52 -14.32 9.65 -34.44 -0.33 -14.66 16 8 H 0.07 2.27 7.98 -52.49 -0.42 1.85 16 9 C 0.02 0.40 4.17 -29.03 -0.12 0.28 16 10 C -0.04 -0.92 5.07 -104.62 -0.53 -1.45 16 11 C -0.08 -1.44 9.67 -39.58 -0.38 -1.82 16 12 C -0.12 -1.96 10.06 -39.43 -0.40 -2.36 16 13 C 0.06 1.02 7.34 -38.58 -0.28 0.73 16 14 O -0.21 -3.57 10.58 1.10 0.01 -3.56 16 15 C 0.08 1.27 7.34 -38.58 -0.28 0.98 16 16 C -0.12 -1.47 10.06 -39.43 -0.40 -1.86 16 17 C -0.09 -0.95 10.01 -39.58 -0.40 -1.35 16 18 C -0.14 -1.58 10.04 -39.57 -0.40 -1.98 16 19 C -0.06 -0.87 10.08 -39.39 -0.40 -1.27 16 20 C -0.11 -1.86 6.38 -105.07 -0.67 -2.53 16 21 C -0.12 -2.32 6.38 -105.07 -0.67 -2.99 16 22 C -0.07 -1.28 9.73 -39.39 -0.38 -1.66 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.03 0.68 7.14 -51.92 -0.37 0.31 16 25 H 0.03 0.60 7.51 -51.93 -0.39 0.21 16 26 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 27 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 29 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 30 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 31 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.13 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 281.56 15.07 4.24 4.24 Total: -1.00 -31.15 281.56 -8.69 -39.84 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -3.31 Total: -0.33 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -5.74 Total: -30.02 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.77 Total: -26.35 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: 0.01 Total: -3.56 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.15 -8.69 -39.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056311.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.721 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds