Wall clock time and date at job start Sun Mar 29 2020 23:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00261 * 2 1 4 4 H 1.48501 * 109.47137 * 270.00226 * 3 2 1 5 5 H 1.48503 * 109.47144 * 29.99796 * 3 2 1 6 6 H 1.48493 * 109.47483 * 150.00082 * 3 2 1 7 7 C 1.37881 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00227 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.97438 * 7 2 1 10 10 C 1.50701 * 109.47025 * 179.97438 * 9 7 2 11 11 C 1.38590 * 119.93433 * 90.00040 * 10 9 7 12 12 C 1.37891 * 120.61384 * 179.97438 * 11 10 9 13 13 C 1.38994 * 120.09273 * 0.02562 * 12 11 10 14 14 O 1.35120 * 132.33342 * 179.97438 * 13 12 11 15 15 C 1.35123 * 111.55283 * 179.97438 * 14 13 12 16 16 C 1.38984 * 132.33712 * 180.02562 * 15 14 13 17 17 C 1.37889 * 120.09407 * 179.97438 * 16 15 14 18 18 C 1.38595 * 120.61474 * 0.02562 * 17 16 15 19 19 C 1.37899 * 120.12108 * 359.97438 * 18 17 16 20 20 C 1.39077 * 119.73071 * 0.02562 * 19 18 17 21 21 C 1.40165 * 119.15088 * 359.97438 * 13 12 11 22 22 C 1.37901 * 119.94150 * 269.98184 * 10 9 7 23 23 H 0.97006 * 120.00024 * 359.97438 * 1 2 3 24 24 H 1.09010 * 109.46983 * 60.00423 * 9 7 2 25 25 H 1.09000 * 109.47292 * 300.00313 * 9 7 2 26 26 H 1.08000 * 119.69644 * 359.95921 * 11 10 9 27 27 H 1.07995 * 119.95488 * 179.97438 * 12 11 10 28 28 H 1.08006 * 119.95179 * 359.96846 * 16 15 14 29 29 H 1.08001 * 119.69645 * 180.28515 * 17 16 15 30 30 H 1.08005 * 119.93805 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.13453 * 180.02562 * 19 18 17 32 32 H 1.08003 * 120.13520 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6149 0.0013 11 6 4.2439 -3.2683 -1.1990 12 6 4.7039 -4.5681 -1.2141 13 6 4.9414 -5.2372 -0.0192 14 8 5.3828 -6.4850 0.2528 15 6 5.4620 -6.7043 1.5838 16 6 5.8543 -7.8103 2.3285 17 6 5.8377 -7.7574 3.7062 18 6 5.4313 -6.6069 4.3635 19 6 5.0385 -5.4996 3.6416 20 6 5.0515 -5.5423 2.2515 21 6 4.7078 -4.5736 1.1931 22 6 4.2440 -3.2624 1.1969 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6797 0.8896 25 1 3.8745 -0.6808 -0.8905 26 1 4.0609 -2.7548 -2.1313 27 1 4.8792 -5.0672 -2.1556 28 1 6.1725 -8.7126 1.8272 29 1 6.1483 -8.6190 4.2785 30 1 5.4230 -6.5773 5.4431 31 1 4.7222 -4.6028 4.1536 32 1 4.0655 -2.7531 2.1325 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056311.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:05 Heat of formation + Delta-G solvation = 15.957869 kcal Electronic energy + Delta-G solvation = -16919.766756 eV Core-core repulsion = 14196.194417 eV Total energy + Delta-G solvation = -2723.572339 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 252.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.40597 -39.47456 -38.64973 -35.27788 -33.54021 -32.92911 -31.45024 -30.17013 -29.12194 -25.25915 -24.82304 -23.49407 -22.34899 -21.79411 -19.30402 -18.97481 -18.14697 -17.38934 -17.23713 -16.39208 -16.05080 -15.66697 -15.25627 -14.94368 -14.70767 -14.52792 -14.14199 -13.85889 -13.49842 -13.36756 -13.11921 -12.93923 -12.44263 -12.26979 -11.97402 -11.84158 -11.71081 -11.58199 -10.81836 -10.78190 -10.01168 -9.15537 -9.01316 -8.29822 -6.35861 -0.34054 0.06124 0.60423 0.82336 1.38451 1.40287 1.52025 1.56270 2.36017 2.61308 2.83756 3.04587 3.35850 3.57827 3.66933 4.04589 4.13435 4.17619 4.30011 4.33060 4.50446 4.54121 4.58359 4.85297 4.96588 5.04305 5.11516 5.21722 5.24879 5.30531 5.43072 5.46216 5.51472 5.60966 5.80891 5.86369 6.17788 6.26347 6.70518 7.27878 8.86841 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.033136 B = 0.005055 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.798012 B = 5537.508719 C = 6016.287116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.523 4.523 8 H 0.026 0.974 9 C 0.025 3.975 10 C -0.072 4.072 11 C -0.088 4.088 12 C -0.108 4.108 13 C 0.044 3.956 14 O -0.213 6.213 15 C 0.052 3.948 16 C -0.121 4.121 17 C -0.076 4.076 18 C -0.132 4.132 19 C -0.081 4.081 20 C -0.147 4.147 21 C -0.138 4.138 22 C -0.081 4.081 23 H 0.268 0.732 24 H 0.033 0.967 25 H 0.041 0.959 26 H 0.152 0.848 27 H 0.161 0.839 28 H 0.157 0.843 29 H 0.179 0.821 30 H 0.166 0.834 31 H 0.134 0.866 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.802 -13.194 5.996 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.561 4.561 8 H 0.044 0.956 9 C -0.012 4.012 10 C -0.072 4.072 11 C -0.105 4.105 12 C -0.126 4.126 13 C -0.002 4.002 14 O -0.119 6.119 15 C 0.006 3.994 16 C -0.139 4.139 17 C -0.094 4.094 18 C -0.150 4.150 19 C -0.099 4.099 20 C -0.148 4.148 21 C -0.139 4.139 22 C -0.099 4.099 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.169 0.831 27 H 0.178 0.822 28 H 0.175 0.825 29 H 0.197 0.803 30 H 0.183 0.817 31 H 0.152 0.848 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.719 -13.270 5.807 20.651 hybrid contribution -0.545 1.032 -0.178 1.181 sum 14.174 -12.238 5.630 19.554 Atomic orbital electron populations 1.70063 1.08433 1.28343 1.52163 1.25985 0.95569 1.03432 0.93815 0.85635 0.79472 0.77910 0.79537 1.18655 1.21034 1.16797 1.21153 0.90786 0.92998 1.51132 0.95589 1.18634 0.94225 0.90145 0.98221 1.20126 0.96356 0.97814 0.92945 1.21118 0.97282 0.93408 0.98730 1.20203 1.03257 0.94000 0.95169 1.19766 1.01337 0.83121 0.95934 1.83938 1.74161 1.29979 1.23837 1.20168 1.01645 0.97078 0.80485 1.20453 1.03807 0.95875 0.93744 1.21472 0.96478 0.99387 0.92029 1.21491 0.99653 0.92089 1.01764 1.20869 0.98175 1.00544 0.90344 1.19668 1.06358 0.93706 0.95037 1.19596 1.05897 0.95441 0.92992 1.20426 0.98519 0.92248 0.98700 0.92318 0.94879 0.94069 0.83055 0.82170 0.82539 0.80330 0.81686 0.84848 0.85760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 2 C 0.01 0.53 5.47 84.66 0.46 0.99 16 3 Si 0.95 43.13 27.47 68.60 1.88 45.01 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 7 C -0.52 -30.15 9.65 25.60 0.25 -29.91 16 8 H 0.03 1.69 7.98 -2.91 -0.02 1.67 16 9 C 0.02 1.17 4.17 29.10 0.12 1.29 16 10 C -0.07 -3.07 5.07 -19.86 -0.10 -3.17 16 11 C -0.09 -3.23 9.67 22.27 0.22 -3.01 16 12 C -0.11 -3.62 10.06 22.37 0.22 -3.39 16 13 C 0.04 1.60 7.34 22.92 0.17 1.77 16 14 O -0.21 -7.37 10.58 -18.98 -0.20 -7.57 16 15 C 0.05 1.60 7.34 22.92 0.17 1.76 16 16 C -0.12 -2.58 10.06 22.37 0.22 -2.35 16 17 C -0.08 -1.22 10.01 22.27 0.22 -0.99 16 18 C -0.13 -2.41 10.04 22.27 0.22 -2.18 16 19 C -0.08 -2.13 10.08 22.39 0.23 -1.90 16 20 C -0.15 -4.89 6.38 -20.15 -0.13 -5.02 16 21 C -0.14 -5.34 6.38 -20.15 -0.13 -5.46 16 22 C -0.08 -3.31 9.73 22.39 0.22 -3.09 16 23 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 24 H 0.03 1.51 7.14 -2.38 -0.02 1.49 16 25 H 0.04 1.80 7.51 -2.39 -0.02 1.78 16 26 H 0.15 4.97 8.06 -2.91 -0.02 4.94 16 27 H 0.16 4.16 8.06 -2.91 -0.02 4.14 16 28 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 30 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.12 4.90 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -71.57 281.56 5.42 -66.15 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.07 Total: 10.19 kcal Atomic # 6 Polarization: -57.04 SS G_CDS: 2.37 Total: -54.68 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.30 Total: -59.11 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.20 Total: -7.57 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.88 Total: 45.01 kcal Total: -71.57 5.42 -66.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056311.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.109 kcal (2) G-P(sol) polarization free energy of solvation -71.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds