Wall clock time and date at job start Sun Mar 29 2020 23:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00086 * 2 1 4 4 H 1.48496 * 109.47095 * 270.00303 * 3 2 1 5 5 H 1.48504 * 109.46827 * 30.00250 * 3 2 1 6 6 H 1.48496 * 109.47080 * 150.00194 * 3 2 1 7 7 C 1.37880 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.50690 * 109.47289 * 179.97438 * 10 9 7 12 12 C 1.38220 * 120.01619 * 100.27173 * 11 10 9 13 13 C 1.38226 * 120.02957 * 180.23918 * 12 11 10 14 14 C 1.50693 * 119.97416 * 179.76733 * 13 12 11 15 15 C 1.50697 * 109.47486 * 269.72037 * 14 13 12 16 16 O 1.20833 * 119.99747 * 0.02562 * 15 14 13 17 17 O 1.34230 * 120.00262 * 179.72204 * 15 14 13 18 18 C 1.38262 * 120.04595 * 359.48794 * 13 12 11 19 19 C 1.38175 * 120.02894 * 0.26182 * 18 13 12 20 20 C 1.38440 * 120.01567 * 280.00447 * 11 10 9 21 21 F 1.35105 * 120.02437 * 0.03480 * 20 11 10 22 22 H 0.96998 * 120.00056 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46925 * 59.99834 * 9 7 2 24 24 H 1.08998 * 109.46638 * 299.99760 * 9 7 2 25 25 H 1.09008 * 109.46859 * 59.99596 * 10 9 7 26 26 H 1.09004 * 109.47140 * 300.00115 * 10 9 7 27 27 H 1.08002 * 119.98208 * 0.02562 * 12 11 10 28 28 H 1.09004 * 109.47069 * 149.72239 * 14 13 12 29 29 H 1.09000 * 109.47237 * 29.72745 * 14 13 12 30 30 H 0.96699 * 116.99771 * 180.27188 * 17 15 14 31 31 H 1.08008 * 119.98302 * 180.27697 * 18 13 12 32 32 H 1.08005 * 120.01047 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4919 -4.9671 0.0001 12 6 1.3307 -5.6730 -1.1773 13 6 0.6354 -6.8677 -1.1779 14 6 0.4558 -7.6336 -2.4632 15 6 -0.8163 -7.1903 -3.1387 16 8 -1.5061 -6.3392 -2.6289 17 8 -1.1799 -7.7364 -4.3097 18 6 0.1096 -7.3632 0.0009 19 6 0.2739 -6.6620 1.1801 20 6 0.9657 -5.4624 1.1809 21 9 1.1267 -4.7758 2.3333 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8720 -3.6042 0.8895 26 1 2.8720 -3.6043 -0.8905 27 1 1.7451 -5.2891 -2.0978 28 1 0.3990 -8.7002 -2.2457 29 1 1.3029 -7.4418 -3.1218 30 1 -2.0018 -7.4170 -4.7066 31 1 -0.4297 -8.2991 0.0000 32 1 -0.1366 -7.0496 2.1008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060051.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:30 Heat of formation + Delta-G solvation = -156.697310 kcal Electronic energy + Delta-G solvation = -17749.551305 eV Core-core repulsion = 14587.722851 eV Total energy + Delta-G solvation = -3161.828455 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.83828 -41.35551 -40.00052 -37.04754 -36.14931 -34.32186 -33.28353 -30.92774 -28.71308 -27.03848 -23.98417 -23.82005 -22.60609 -20.99357 -19.00250 -18.65494 -18.38144 -17.75314 -17.43776 -16.66288 -16.63883 -16.41875 -15.99254 -15.03214 -14.81424 -14.65019 -14.28673 -14.21622 -14.08828 -13.49434 -13.07111 -12.99242 -12.86635 -12.71639 -12.47200 -12.45380 -12.01262 -11.79270 -11.65632 -11.56958 -11.21676 -10.60516 -9.82426 -9.44895 -8.22935 -6.36652 0.11731 0.32070 1.30721 1.37379 1.40388 1.51683 2.15363 2.38684 2.78999 3.09460 3.39840 3.57063 3.74339 3.89264 4.23981 4.27056 4.41666 4.56258 4.63994 4.65894 4.73857 4.90411 5.07190 5.13766 5.21681 5.33149 5.42438 5.46369 5.67350 5.70784 5.77577 5.97373 6.16735 6.79939 7.06861 7.33154 8.89268 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.022246 B = 0.005416 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.375696 B = 5168.211797 C = 5959.915673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.038 3.962 10 C -0.065 4.065 11 C -0.123 4.123 12 C -0.086 4.086 13 C -0.091 4.091 14 C -0.062 4.062 15 C 0.479 3.521 16 O -0.556 6.556 17 O -0.511 6.511 18 C -0.082 4.082 19 C -0.153 4.153 20 C 0.068 3.932 21 F -0.155 7.155 22 H 0.264 0.736 23 H -0.013 1.013 24 H -0.020 1.020 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.139 0.861 28 H 0.157 0.843 29 H 0.142 0.858 30 H 0.425 0.575 31 H 0.170 0.830 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.219 -20.447 -6.266 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.001 3.999 10 C -0.102 4.102 11 C -0.123 4.123 12 C -0.104 4.104 13 C -0.091 4.091 14 C -0.099 4.099 15 C 0.323 3.677 16 O -0.446 6.446 17 O -0.325 6.325 18 C -0.099 4.099 19 C -0.172 4.172 20 C 0.049 3.951 21 F -0.134 7.134 22 H 0.073 0.927 23 H 0.005 0.995 24 H -0.001 1.001 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.157 0.843 28 H 0.175 0.825 29 H 0.160 0.840 30 H 0.287 0.713 31 H 0.187 0.813 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.257 -20.230 -5.916 21.115 hybrid contribution -0.577 1.797 0.270 1.906 sum 0.681 -18.433 -5.646 19.291 Atomic orbital electron populations 1.70140 1.08137 1.27904 1.51444 1.26097 0.95781 1.03772 0.94448 0.85340 0.78572 0.77770 0.78712 1.19318 1.20739 1.18464 1.21681 0.93689 0.91980 1.50955 0.91602 1.18869 0.93960 0.92800 0.94237 1.20491 0.97383 0.90354 1.01998 1.20296 1.01067 0.97625 0.93350 1.21008 0.98693 0.94056 0.96665 1.19593 0.98763 0.95231 0.95513 1.20355 0.93482 1.03349 0.92688 1.23853 0.87393 0.77790 0.78664 1.90835 1.55478 1.32541 1.65768 1.84470 1.47526 1.64760 1.35701 1.21196 0.97700 1.00780 0.90247 1.21357 1.00581 0.93551 1.01668 1.18093 1.02296 0.93188 0.81525 1.91438 1.94048 1.79815 1.48098 0.92718 0.99453 1.00123 0.92425 0.90380 0.84320 0.82521 0.84037 0.71312 0.81286 0.82696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.42 13.29 21.45 0.28 -60.14 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 45.95 29.54 68.60 2.03 47.98 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.55 -32.85 9.11 25.60 0.23 -32.61 16 8 H 0.07 3.74 7.74 -2.91 -0.02 3.71 16 9 C 0.04 2.23 4.95 29.85 0.15 2.37 16 10 C -0.06 -2.95 5.01 29.84 0.15 -2.80 16 11 C -0.12 -4.82 5.14 -19.82 -0.10 -4.92 16 12 C -0.09 -2.72 9.32 22.26 0.21 -2.51 16 13 C -0.09 -2.19 4.37 -19.86 -0.09 -2.28 16 14 C -0.06 -0.91 5.94 29.10 0.17 -0.74 16 15 C 0.48 9.88 8.32 71.23 0.59 10.47 16 16 O -0.56 -17.95 16.79 21.94 0.37 -17.58 16 17 O -0.51 -7.19 13.42 -51.41 -0.69 -7.88 16 18 C -0.08 -1.88 9.70 22.26 0.22 -1.66 16 19 C -0.15 -4.41 10.03 22.31 0.22 -4.18 16 20 C 0.07 2.60 7.24 22.37 0.16 2.76 16 21 F -0.16 -6.69 16.66 44.97 0.75 -5.94 16 22 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 23 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 24 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 25 H 0.06 2.62 7.95 -2.38 -0.02 2.60 16 26 H 0.08 3.23 8.00 -2.39 -0.02 3.21 16 27 H 0.14 3.94 8.04 -2.91 -0.02 3.91 16 28 H 0.16 1.02 8.09 -2.38 -0.02 1.00 16 29 H 0.14 1.43 8.08 -2.39 -0.02 1.41 16 30 H 0.43 3.25 9.10 -74.06 -0.67 2.57 16 31 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -82.28 293.33 5.59 -76.69 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 0.47 Total: 2.71 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: 2.38 Total: -35.84 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.28 Total: -60.14 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.32 Total: -25.46 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.75 Total: -5.94 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -82.28 5.59 -76.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060051.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.006 kcal (2) G-P(sol) polarization free energy of solvation -82.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds