Wall clock time and date at job start Sun Mar 29 2020 23:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46946 * 179.97438 * 11 10 9 13 13 C 1.38472 * 119.88866 * 269.72900 * 12 11 10 14 14 C 1.38203 * 120.35295 * 179.72500 * 13 12 11 15 15 C 1.38315 * 120.11983 * 0.54754 * 14 13 12 16 16 F 1.35103 * 120.11286 * 179.70619 * 15 14 13 17 17 C 1.39876 * 119.77330 * 359.72945 * 15 14 13 18 18 C 1.47566 * 120.17463 * 179.97438 * 17 15 14 19 19 O 1.21491 * 119.99804 * 0.02562 * 18 17 15 20 20 O 1.34728 * 120.00131 * 180.02562 * 18 17 15 21 21 C 1.37837 * 119.88841 * 90.00216 * 12 11 10 22 22 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 26 26 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 27 27 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 28 28 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 29 29 H 1.08009 * 119.82487 * 359.97438 * 13 12 11 30 30 H 1.08000 * 119.94427 * 180.25227 * 14 13 12 31 31 H 0.96701 * 116.99892 * 180.02562 * 20 18 17 32 32 H 1.07997 * 120.05820 * 359.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 2.4595 -6.1325 -0.0024 13 6 2.9036 -6.6602 -1.2031 14 6 3.8060 -7.7069 -1.2147 15 6 4.2632 -8.2424 -0.0242 16 9 5.1408 -9.2695 -0.0357 17 6 3.8136 -7.7170 1.1917 18 6 4.2952 -8.2819 2.4671 19 8 5.0847 -9.2053 2.4629 20 8 3.8594 -7.7735 3.6363 21 6 2.9057 -6.6551 1.1925 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6246 -2.5563 -0.8919 25 1 2.8725 -3.6039 -0.8910 26 1 2.8713 -3.6047 0.8890 27 1 0.8532 -5.0450 0.8876 28 1 0.8540 -5.0446 -0.8922 29 1 2.5460 -6.2490 -2.1356 30 1 4.1511 -8.1108 -2.1550 31 1 4.2034 -8.1762 4.4454 32 1 2.5545 -6.2441 2.1274 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065664.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:41 Heat of formation + Delta-G solvation = -135.469428 kcal Electronic energy + Delta-G solvation = -17376.781768 eV Core-core repulsion = 14215.873823 eV Total energy + Delta-G solvation = -3160.907945 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.00238 -40.43150 -38.98719 -36.23108 -34.78348 -32.65774 -31.72026 -30.26599 -26.73576 -24.96523 -23.69658 -22.56291 -20.80780 -20.04733 -18.26048 -17.85049 -16.83280 -16.42308 -16.22574 -16.11123 -15.29520 -14.71079 -14.47205 -14.20788 -14.05022 -13.45487 -13.13641 -12.95518 -12.51194 -11.96070 -11.80485 -11.65921 -11.51475 -11.30084 -10.83714 -10.74528 -10.66997 -10.52430 -9.75490 -9.44638 -9.36288 -9.17072 -8.54758 -8.36990 -6.02378 -4.04881 0.41795 1.03732 2.35226 2.77117 3.31914 3.36498 3.38913 3.46590 3.99350 4.43859 4.46469 4.73625 4.81988 5.01503 5.18615 5.33554 5.48718 5.73560 5.76926 5.86443 5.93266 5.99861 6.23847 6.27956 6.31360 6.64696 6.70971 6.79763 7.06297 7.63988 7.69696 7.77593 7.97297 8.39810 9.02062 9.59522 11.08806 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.031453 B = 0.003994 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.990228 B = 7008.345527 C = 7348.476270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.105 4.105 11 C -0.085 4.085 12 C -0.088 4.088 13 C -0.051 4.051 14 C -0.165 4.165 15 C 0.148 3.852 16 F -0.121 7.121 17 C -0.168 4.168 18 C 0.529 3.471 19 O -0.508 6.508 20 O -0.508 6.508 21 C -0.033 4.033 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.016 0.984 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.415 0.585 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 -15.935 1.371 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.143 4.143 11 C -0.122 4.122 12 C -0.089 4.089 13 C -0.069 4.069 14 C -0.183 4.183 15 C 0.129 3.871 16 F -0.099 7.099 17 C -0.170 4.170 18 C 0.373 3.627 19 O -0.398 6.398 20 O -0.319 6.319 21 C -0.051 4.051 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.160 0.840 30 H 0.162 0.838 31 H 0.274 0.726 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.078 -15.931 1.017 16.752 hybrid contribution 0.891 0.510 0.535 1.157 sum 5.969 -15.421 1.552 16.608 Atomic orbital electron populations 1.69952 1.06043 1.26727 1.50796 1.25012 0.94836 0.99224 0.95297 0.86672 0.79605 0.83173 0.78641 1.20250 1.21279 1.20244 1.21219 0.93011 0.91116 1.50702 0.92776 1.19117 0.93969 0.91250 0.97318 1.21670 0.99090 0.92816 1.00713 1.20845 0.95881 0.92236 1.03252 1.20312 0.98883 0.97533 0.92134 1.21310 0.93557 0.93076 0.98967 1.21108 1.00952 0.99524 0.96761 1.17639 0.89947 0.86558 0.92992 1.91575 1.65618 1.55460 1.97234 1.19052 1.05832 1.02794 0.89288 1.20611 0.77929 0.79914 0.84235 1.90938 1.32759 1.27976 1.88079 1.84574 1.68478 1.62192 1.16704 1.21348 0.92369 0.91738 0.99630 0.92938 0.96498 0.96521 0.93157 0.93135 0.90782 0.90774 0.84019 0.83843 0.72646 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -1.99 5.13 -26.73 -0.14 -2.12 16 11 C -0.08 -1.25 5.34 -27.88 -0.15 -1.39 16 12 C -0.09 -1.13 5.13 -104.68 -0.54 -1.67 16 13 C -0.05 -0.57 9.68 -39.51 -0.38 -0.95 16 14 C -0.16 -1.80 10.01 -39.57 -0.40 -2.20 16 15 C 0.15 1.94 7.29 -38.94 -0.28 1.66 16 16 F -0.12 -1.74 15.55 2.25 0.04 -1.71 16 17 C -0.17 -2.20 5.88 -104.93 -0.62 -2.82 16 18 C 0.53 6.92 8.27 34.54 0.29 7.21 16 19 O -0.51 -7.97 16.13 -19.26 -0.31 -8.28 16 20 O -0.51 -5.01 12.68 -40.57 -0.51 -5.52 16 21 C -0.03 -0.41 9.26 -39.18 -0.36 -0.77 16 22 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 28 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 29 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 30 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 31 H 0.41 2.10 9.11 45.56 0.42 2.51 16 32 H 0.15 1.73 7.61 -52.49 -0.40 1.33 16 LS Contribution 291.66 15.07 4.40 4.40 Total: -1.00 -32.48 291.66 -6.71 -39.19 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -2.90 Total: -2.79 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -3.13 Total: -15.92 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.83 Total: -13.80 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.48 -6.71 -39.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065664.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.280 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds