Wall clock time and date at job start Sun Mar 29 2020 23:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46946 * 179.97438 * 11 10 9 13 13 C 1.38472 * 119.88866 * 269.72900 * 12 11 10 14 14 C 1.38203 * 120.35295 * 179.72500 * 13 12 11 15 15 C 1.38315 * 120.11983 * 0.54754 * 14 13 12 16 16 F 1.35103 * 120.11286 * 179.70619 * 15 14 13 17 17 C 1.39876 * 119.77330 * 359.72945 * 15 14 13 18 18 C 1.47566 * 120.17463 * 179.97438 * 17 15 14 19 19 O 1.21491 * 119.99804 * 0.02562 * 18 17 15 20 20 O 1.34728 * 120.00131 * 180.02562 * 18 17 15 21 21 C 1.37837 * 119.88841 * 90.00216 * 12 11 10 22 22 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 26 26 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 27 27 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 28 28 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 29 29 H 1.08009 * 119.82487 * 359.97438 * 13 12 11 30 30 H 1.08000 * 119.94427 * 180.25227 * 14 13 12 31 31 H 0.96701 * 116.99892 * 180.02562 * 20 18 17 32 32 H 1.07997 * 120.05820 * 359.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 2.4595 -6.1325 -0.0024 13 6 2.9036 -6.6602 -1.2031 14 6 3.8060 -7.7069 -1.2147 15 6 4.2632 -8.2424 -0.0242 16 9 5.1408 -9.2695 -0.0357 17 6 3.8136 -7.7170 1.1917 18 6 4.2952 -8.2819 2.4671 19 8 5.0847 -9.2053 2.4629 20 8 3.8594 -7.7735 3.6363 21 6 2.9057 -6.6551 1.1925 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6246 -2.5563 -0.8919 25 1 2.8725 -3.6039 -0.8910 26 1 2.8713 -3.6047 0.8890 27 1 0.8532 -5.0450 0.8876 28 1 0.8540 -5.0446 -0.8922 29 1 2.5460 -6.2490 -2.1356 30 1 4.1511 -8.1108 -2.1550 31 1 4.2034 -8.1762 4.4454 32 1 2.5545 -6.2441 2.1274 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065664.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:40 Heat of formation + Delta-G solvation = -154.758206 kcal Electronic energy + Delta-G solvation = -17377.618192 eV Core-core repulsion = 14215.873823 eV Total energy + Delta-G solvation = -3161.744369 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.03504 -41.40132 -39.96590 -37.16959 -36.36093 -34.45805 -32.65493 -31.75778 -28.33940 -25.92921 -25.31774 -23.58720 -22.24164 -21.33315 -19.21657 -18.84577 -18.41496 -17.69376 -17.41506 -17.11463 -16.51800 -16.30038 -15.68378 -15.40899 -15.20327 -14.41212 -14.36561 -14.27235 -14.18188 -13.25759 -13.11700 -13.04059 -12.67853 -12.62181 -12.48744 -12.34207 -12.26036 -11.72966 -11.37251 -11.27219 -11.11817 -10.50289 -10.28246 -9.62765 -8.16305 -6.26441 -0.54274 0.09337 1.37850 1.42754 1.44564 1.52506 1.92002 2.43385 2.51412 3.04152 3.17207 3.54199 3.73276 3.96134 4.06790 4.30294 4.38613 4.58649 4.66870 4.77492 4.90572 5.00927 5.03305 5.07033 5.31258 5.32922 5.45702 5.50575 5.58950 5.70696 5.84917 5.93258 6.30966 6.86891 6.91335 7.42711 8.94825 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.031453 B = 0.003994 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.990228 B = 7008.345527 C = 7348.476270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.021 3.979 10 C -0.093 4.093 11 C -0.074 4.074 12 C -0.097 4.097 13 C -0.043 4.043 14 C -0.153 4.153 15 C 0.133 3.867 16 F -0.132 7.132 17 C -0.182 4.182 18 C 0.532 3.468 19 O -0.541 6.541 20 O -0.500 6.500 21 C -0.031 4.031 22 H 0.263 0.737 23 H -0.006 1.006 24 H -0.003 1.003 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.165 0.835 30 H 0.172 0.828 31 H 0.435 0.565 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.898 -15.938 0.849 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.016 4.016 10 C -0.130 4.130 11 C -0.111 4.111 12 C -0.097 4.097 13 C -0.061 4.061 14 C -0.172 4.172 15 C 0.114 3.886 16 F -0.110 7.110 17 C -0.184 4.184 18 C 0.378 3.622 19 O -0.434 6.434 20 O -0.314 6.314 21 C -0.049 4.049 22 H 0.071 0.929 23 H 0.012 0.988 24 H 0.015 0.985 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.183 0.817 30 H 0.190 0.810 31 H 0.298 0.702 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.845 -15.939 0.520 16.984 hybrid contribution 0.622 0.502 0.726 1.080 sum 6.467 -15.436 1.245 16.782 Atomic orbital electron populations 1.70078 1.07645 1.27698 1.51843 1.25904 0.95702 1.03079 0.94910 0.85601 0.78362 0.78601 0.79094 1.19247 1.20940 1.19422 1.21716 0.93496 0.92676 1.50279 0.92462 1.19050 0.94513 0.92819 0.95183 1.21444 0.97915 0.92946 1.00741 1.20628 0.95907 0.90706 1.03868 1.20145 0.99109 0.97464 0.93001 1.21570 0.92749 0.92543 0.99256 1.21376 0.99931 0.98727 0.97118 1.17979 0.90143 0.86622 0.93876 1.91546 1.66115 1.56067 1.97320 1.19174 1.06367 1.03248 0.89610 1.20659 0.77260 0.79296 0.84989 1.90922 1.34347 1.29475 1.88611 1.84535 1.68023 1.61867 1.16953 1.21377 0.92071 0.91483 0.99952 0.92851 0.98776 0.98461 0.92764 0.93383 0.90671 0.89881 0.81718 0.81040 0.70249 0.82853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.54 -30.05 9.11 25.60 0.23 -29.81 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.02 16 9 C 0.02 1.06 4.97 29.85 0.15 1.21 16 10 C -0.09 -3.42 5.13 30.59 0.16 -3.26 16 11 C -0.07 -2.06 5.34 29.85 0.16 -1.90 16 12 C -0.10 -2.29 5.13 -19.90 -0.10 -2.39 16 13 C -0.04 -0.85 9.68 22.32 0.22 -0.63 16 14 C -0.15 -2.93 10.01 22.28 0.22 -2.70 16 15 C 0.13 3.29 7.29 22.68 0.17 3.46 16 16 F -0.13 -3.72 15.55 44.97 0.70 -3.02 16 17 C -0.18 -4.58 5.88 -20.06 -0.12 -4.70 16 18 C 0.53 13.54 8.27 70.28 0.58 14.12 16 19 O -0.54 -16.85 16.13 19.86 0.32 -16.53 16 20 O -0.50 -9.20 12.68 -56.38 -0.71 -9.91 16 21 C -0.03 -0.73 9.26 22.53 0.21 -0.52 16 22 H 0.26 14.77 8.31 -92.71 -0.77 13.99 16 23 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 24 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 25 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.07 2.07 8.08 -2.39 -0.02 2.05 16 28 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 29 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.44 3.75 9.11 -74.06 -0.67 3.07 16 32 H 0.15 3.38 7.61 -2.91 -0.02 3.35 16 Total: -1.00 -69.63 291.66 5.42 -64.21 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 0.47 Total: 1.57 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 2.33 Total: -26.56 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.28 Total: -55.20 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.39 Total: -26.45 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.70 Total: -3.02 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -69.63 5.42 -64.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065664.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.544 kcal (2) G-P(sol) polarization free energy of solvation -69.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds