Wall clock time and date at job start Sun Mar 29 2020 23:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99977 * 2 1 4 4 H 1.48497 * 109.46935 * 239.99974 * 3 2 1 5 5 H 1.48505 * 109.46860 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47020 * 119.99968 * 3 2 1 7 7 C 1.38995 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99545 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00386 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00340 * 179.97438 * 9 7 2 11 11 O 1.21646 * 119.99771 * 359.73030 * 10 9 7 12 12 C 1.47326 * 120.00296 * 180.02562 * 10 9 7 13 13 N 1.36074 * 126.45160 * 359.74912 * 12 10 9 14 14 C 1.29941 * 108.47766 * 179.97438 * 13 12 10 15 15 O 1.34051 * 109.26761 * 0.02562 * 14 13 12 16 16 C 1.34269 * 108.22845 * 359.75313 * 15 14 13 17 17 C 1.50700 * 126.53349 * 180.28219 * 16 15 14 18 18 H 1.09005 * 109.82453 * 195.83002 * 17 16 15 19 19 C 1.54374 * 109.83257 * 74.94338 * 17 16 15 20 20 C 1.55450 * 102.18659 * 219.18157 * 19 17 16 21 21 C 1.54949 * 100.98668 * 34.03948 * 20 19 17 22 22 O 1.43233 * 109.82805 * 316.71465 * 17 16 15 23 23 H 0.96995 * 120.00198 * 0.02562 * 1 2 3 24 24 H 0.97004 * 120.00013 * 0.02562 * 9 7 2 25 25 H 1.08004 * 125.36692 * 180.02562 * 14 13 12 26 26 H 1.09005 * 110.84685 * 337.32029 * 19 17 16 27 27 H 1.09004 * 110.84661 * 100.93855 * 19 17 16 28 28 H 1.08994 * 111.06184 * 276.12290 * 20 19 17 29 29 H 1.09004 * 111.18454 * 152.00657 * 20 19 17 30 30 H 1.09004 * 110.30832 * 204.68785 * 21 20 19 31 31 H 1.09001 * 110.30724 * 82.52478 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0090 -1.2037 0.0005 8 1 3.0890 -1.2037 0.0001 9 7 1.3244 -2.3897 0.0005 10 6 1.9983 -3.5569 0.0005 11 8 3.2147 -3.5569 -0.0044 12 6 1.2617 -4.8328 0.0000 13 7 -0.0904 -4.9857 0.0042 14 6 -0.3611 -6.2566 0.0015 15 8 0.7844 -6.9529 -0.0039 16 6 1.8056 -6.0812 -0.0100 17 6 3.2740 -6.4199 -0.0234 18 1 3.8583 -5.5424 0.2539 19 6 3.6878 -6.9012 -1.4307 20 6 4.6756 -8.0564 -1.1051 21 6 4.0437 -8.6296 0.1884 22 8 3.5348 -7.4874 0.8952 23 1 -0.4850 0.8400 -0.0004 24 1 0.3544 -2.3897 -0.0002 25 1 -1.3528 -6.6846 0.0033 26 1 2.8246 -7.2732 -1.9827 27 1 4.1881 -6.1047 -1.9815 28 1 5.6782 -7.6729 -0.9159 29 1 4.6864 -8.8015 -1.9006 30 1 4.8004 -9.1382 0.7859 31 1 3.2323 -9.3144 -0.0583 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328457435.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:51 Heat of formation + Delta-G solvation = -61.773748 kcal Electronic energy + Delta-G solvation = -18412.699468 eV Core-core repulsion = 15274.907169 eV Total energy + Delta-G solvation = -3137.792298 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.90854 -39.21686 -37.98015 -34.23259 -34.09126 -32.18280 -31.30534 -31.16303 -27.95983 -25.45567 -23.21656 -22.90655 -21.74876 -20.79458 -19.57609 -18.07090 -17.12862 -16.63495 -16.27501 -16.09736 -15.45096 -14.95751 -14.52492 -14.03329 -13.58020 -13.49608 -13.36227 -12.97336 -12.62300 -11.79892 -11.65251 -11.61363 -11.30999 -11.16142 -10.89016 -10.78691 -10.49442 -10.37800 -10.22598 -9.69502 -9.59025 -8.65520 -8.41204 -8.05937 -6.53015 -3.88424 1.60200 2.66777 2.99948 3.21270 3.22036 3.26283 3.89851 4.08684 4.31789 4.41455 4.51022 4.74047 4.83802 4.95690 5.18027 5.28336 5.29724 5.57466 5.63402 5.66828 5.82008 5.94166 5.97623 6.01115 6.14054 6.41944 6.75363 7.01743 7.44090 7.87176 8.03849 8.52922 9.04642 9.45682 9.97569 10.62957 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.031881 B = 0.005749 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.058110 B = 4869.024928 C = 5541.749287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.301 4.301 8 H 0.109 0.891 9 N -0.522 5.522 10 C 0.498 3.502 11 O -0.598 6.598 12 C -0.019 4.019 13 N -0.465 5.465 14 C 0.157 3.843 15 O -0.201 6.201 16 C -0.015 4.015 17 C 0.163 3.837 18 H 0.149 0.851 19 C -0.145 4.145 20 C -0.154 4.154 21 C 0.047 3.953 22 O -0.371 6.371 23 H 0.277 0.723 24 H 0.403 0.597 25 H 0.248 0.752 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.619 -14.318 -2.383 14.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.178 4.178 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.430 4.430 8 H 0.127 0.873 9 N -0.155 5.155 10 C 0.284 3.716 11 O -0.486 6.486 12 C -0.140 4.140 13 N -0.195 5.195 14 C -0.070 4.070 15 O -0.087 6.087 16 C -0.071 4.071 17 C 0.106 3.894 18 H 0.166 0.834 19 C -0.182 4.182 20 C -0.192 4.192 21 C -0.029 4.029 22 O -0.290 6.290 23 H 0.087 0.913 24 H 0.238 0.762 25 H 0.264 0.736 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.762 -13.645 -2.159 14.088 hybrid contribution -0.198 0.190 -0.225 0.355 sum 2.564 -13.455 -2.384 13.903 Atomic orbital electron populations 1.69647 1.06166 1.28861 1.47428 1.25441 0.95683 1.00185 0.96513 0.85817 0.78787 0.79765 0.79300 1.19604 1.20756 1.19580 1.19817 0.93708 0.82025 1.47494 0.87321 1.41787 1.10149 1.04189 1.59335 1.16274 0.86382 0.81531 0.87403 1.90540 1.12401 1.85976 1.59637 1.22080 0.88685 0.95635 1.07562 1.70864 1.14298 1.17879 1.16448 1.27927 0.90970 0.86147 1.02002 1.84289 1.15361 1.39231 1.69834 1.23877 0.90293 0.87461 1.05458 1.21737 0.84812 0.93060 0.89821 0.83431 1.23194 0.99669 0.98913 0.96460 1.23316 0.99854 0.97957 0.98075 1.23416 0.97475 0.89182 0.92865 1.88527 1.84944 1.23106 1.32461 0.91328 0.76163 0.73606 0.90592 0.88653 0.89883 0.89817 0.89554 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.28 13.05 55.50 0.72 -23.55 16 2 C 0.03 0.70 5.50 -17.45 -0.10 0.61 16 3 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.30 -8.48 9.68 -14.99 -0.15 -8.62 16 8 H 0.11 3.11 7.15 -52.48 -0.38 2.74 16 9 N -0.52 -14.27 5.28 -11.98 -0.06 -14.33 16 10 C 0.50 12.91 7.76 -12.56 -0.10 12.81 16 11 O -0.60 -16.23 14.14 5.24 0.07 -16.15 16 12 C -0.02 -0.42 6.99 -83.03 -0.58 -1.00 16 13 N -0.46 -9.38 11.05 -11.49 -0.13 -9.51 16 14 C 0.16 2.42 13.19 51.96 0.69 3.11 16 15 O -0.20 -3.39 10.73 6.41 0.07 -3.33 16 16 C -0.01 -0.28 6.20 -35.05 -0.22 -0.50 16 17 C 0.16 2.86 3.77 -27.16 -0.10 2.75 16 18 H 0.15 2.96 5.84 -51.93 -0.30 2.65 16 19 C -0.14 -1.98 6.55 -24.71 -0.16 -2.14 16 20 C -0.15 -1.62 7.16 -24.40 -0.17 -1.80 16 21 C 0.05 0.55 7.78 38.19 0.30 0.85 16 22 O -0.37 -6.16 11.00 -35.29 -0.39 -6.55 16 23 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.40 11.01 7.62 -40.82 -0.31 10.70 16 25 H 0.25 2.25 8.06 -52.48 -0.42 1.83 16 26 H 0.08 1.01 7.84 -51.93 -0.41 0.60 16 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 276.24 15.07 4.16 4.16 Total: -1.00 -32.51 276.24 -4.23 -36.74 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -3.07 Total: 10.77 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.59 Total: 6.07 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.53 Total: -47.39 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.25 Total: -26.03 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.51 -4.23 -36.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328457435.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.035 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds