Wall clock time and date at job start Sun Mar 29 2020 23:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09011 * 110.50897 * 2 1 4 4 O 1.45950 * 110.56877 * 122.75232 * 2 1 3 5 5 C 1.34299 * 106.89489 * 118.71897 * 4 2 1 6 6 O 1.21462 * 123.78271 * 180.02562 * 5 4 2 7 7 N 1.33834 * 112.42811 * 359.97438 * 5 4 2 8 8 C 1.46503 * 124.33902 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.46670 * 90.03123 * 8 7 5 10 10 H 1.08998 * 109.47711 * 54.99950 * 9 8 7 11 11 C 1.47204 * 109.47142 * 294.99270 * 9 8 7 12 12 N 5.20305 * 94.54413 * 174.58527 * 2 1 3 13 13 C 1.53004 * 109.47070 * 175.00138 * 9 8 7 14 14 C 1.50701 * 109.47211 * 185.00010 * 13 9 8 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 9 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 9 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48504 * 109.47266 * 60.00049 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99456 * 18 16 14 22 22 C 1.34811 * 111.31733 * 0.24948 * 7 5 4 23 23 O 1.21226 * 127.19790 * 179.72519 * 22 7 5 24 24 H 1.08995 * 109.47514 * 298.70185 * 1 2 3 25 25 H 1.09004 * 109.46989 * 58.70436 * 1 2 3 26 26 H 1.08997 * 109.47366 * 178.69888 * 1 2 3 27 27 H 1.08999 * 109.47377 * 330.02693 * 8 7 5 28 28 H 1.09000 * 109.46979 * 210.02776 * 8 7 5 29 29 H 1.09000 * 109.47211 * 64.99037 * 13 9 8 30 30 H 1.09007 * 109.46376 * 304.99579 * 13 9 8 31 31 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9119 1.0210 0.0000 4 8 2.0427 -0.7393 1.1492 5 6 2.7579 -1.7674 0.6644 6 8 3.3246 -2.5844 1.3620 7 7 2.7753 -1.7913 -0.6736 8 6 3.4769 -2.7987 -1.4731 9 6 2.5370 -3.9731 -1.7526 10 1 1.6245 -3.6047 -2.2212 11 6 2.2016 -4.6452 -0.4866 12 7 1.9422 -5.1636 0.4894 13 6 3.2266 -4.9664 -2.6900 14 6 2.2590 -6.0598 -3.0633 15 1 1.2529 -6.0476 -2.6708 16 6 2.6600 -7.0788 -3.9009 17 7 3.8852 -7.0938 -4.3786 18 14 1.4629 -8.4383 -4.3573 19 1 0.2855 -7.8507 -5.0455 20 1 2.1338 -9.4049 -5.2634 21 1 1.0178 -9.1399 -3.1265 22 6 2.0693 -0.7662 -1.1913 23 8 1.9001 -0.5114 -2.3644 24 1 -0.3634 0.4935 0.9013 25 1 -0.3633 0.5338 -0.8782 26 1 -0.3634 -1.0274 -0.0233 27 1 4.3496 -3.1542 -0.9252 28 1 3.7959 -2.3561 -2.4167 29 1 4.0901 -5.4015 -2.1869 30 1 3.5543 -4.4479 -3.5912 31 1 4.1674 -7.8109 -4.9675 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329691021.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:18 Heat of formation + Delta-G solvation = -77.797049 kcal Electronic energy + Delta-G solvation = -18456.607413 eV Core-core repulsion = 15318.120292 eV Total energy + Delta-G solvation = -3138.487121 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.89810 -38.94225 -37.98095 -36.77744 -35.28963 -33.73306 -32.16703 -31.82732 -27.83743 -25.34980 -24.50757 -22.74819 -21.94638 -21.45628 -18.11588 -17.70649 -17.18177 -16.72076 -16.35496 -16.05289 -14.99827 -14.92794 -14.72923 -14.58521 -14.09151 -13.58889 -13.12924 -12.91248 -12.65123 -12.53974 -12.17498 -11.85157 -11.61823 -11.45480 -11.26821 -11.14732 -10.95257 -10.69104 -10.46022 -10.33168 -10.11179 -9.61109 -9.30368 -8.50476 -6.14940 -4.18844 1.26547 1.90187 2.59677 2.75718 3.28677 3.33095 3.36606 3.46153 3.55844 3.60924 4.20270 4.34432 4.36591 4.57504 4.83630 5.14049 5.15591 5.21016 5.23446 5.25452 5.45867 5.61486 5.67359 6.12868 6.29780 6.81292 6.96496 7.30214 7.40211 7.51868 7.78754 8.14081 8.37340 8.84193 9.46958 10.95864 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.030871 B = 0.005724 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.796634 B = 4890.290006 C = 5095.269704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.037 3.963 3 H 0.149 0.851 4 O -0.308 6.308 5 C 0.642 3.358 6 O -0.459 6.459 7 N -0.584 5.584 8 C 0.123 3.877 9 C -0.007 4.007 10 H 0.106 0.894 11 C 0.226 3.774 12 N -0.447 5.447 13 C 0.035 3.965 14 C -0.529 4.529 15 H 0.056 0.944 16 C 0.065 3.935 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.277 1.277 22 C 0.504 3.496 23 O -0.444 6.444 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.419 16.855 4.731 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 H 0.166 0.834 4 O -0.219 6.219 5 C 0.396 3.604 6 O -0.338 6.338 7 N -0.339 5.339 8 C 0.003 3.997 9 C -0.029 4.029 10 H 0.124 0.876 11 C -0.092 4.092 12 N -0.123 5.123 13 C -0.004 4.004 14 C -0.567 4.567 15 H 0.075 0.925 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.202 1.202 22 C 0.290 3.710 23 O -0.312 6.312 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.092 0.908 27 H 0.125 0.875 28 H 0.138 0.862 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.532 15.752 6.073 17.247 hybrid contribution -0.460 -0.709 -0.757 1.134 sum -3.992 15.043 5.317 16.447 Atomic orbital electron populations 1.21950 0.89072 1.04891 1.05027 1.24010 0.98758 0.97819 0.81598 0.83374 1.87831 1.63610 1.39011 1.31436 1.18348 0.78981 0.81467 0.81651 1.91162 1.44272 1.37078 1.61320 1.47067 1.49376 1.28808 1.08614 1.22138 0.95144 0.86085 0.96333 1.19612 1.00780 0.94371 0.88167 0.87596 1.28892 0.93146 0.93401 0.93745 1.80995 1.09148 1.09560 1.12597 1.19168 0.96111 0.92184 0.92895 1.21020 0.98130 1.08198 1.29380 0.92542 1.24931 0.95246 0.97919 0.95697 1.69914 1.16875 1.33239 1.32766 0.86623 0.81128 0.81686 0.78475 1.20013 1.21081 1.20205 1.21206 0.77962 0.81064 0.90729 1.90853 1.55574 1.68685 1.16109 0.89388 0.88657 0.90846 0.87533 0.86242 0.95053 0.93835 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.70 37.15 0.36 -0.67 16 2 C 0.04 0.31 4.42 -27.46 -0.12 0.19 16 3 H 0.15 0.72 8.14 -51.92 -0.42 0.30 16 4 O -0.31 -3.72 11.01 -39.14 -0.43 -4.15 16 5 C 0.64 9.59 8.22 53.63 0.44 10.03 16 6 O -0.46 -8.62 16.56 -19.00 -0.31 -8.93 16 7 N -0.58 -7.88 2.50 -120.80 -0.30 -8.18 16 8 C 0.12 1.77 5.16 -4.04 -0.02 1.75 16 9 C -0.01 -0.12 2.42 -93.40 -0.23 -0.35 16 10 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 11 C 0.23 4.77 12.21 -20.79 -0.25 4.52 16 12 N -0.45 -10.34 18.50 42.12 0.78 -9.56 16 13 C 0.04 0.79 4.42 -27.88 -0.12 0.67 16 14 C -0.53 -13.93 8.60 -34.44 -0.30 -14.23 16 15 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 18 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.50 5.83 7.67 -10.54 -0.08 5.75 16 23 O -0.44 -5.99 17.77 5.60 0.10 -5.89 16 24 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.11 1.53 7.87 -51.93 -0.41 1.12 16 28 H 0.12 1.48 8.01 -51.93 -0.42 1.06 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 287.53 15.07 4.33 4.33 Total: -1.00 -32.90 287.53 -3.86 -36.75 By element: Atomic # 1 Polarization: -2.17 SS G_CDS: -3.32 Total: -5.49 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -0.42 Total: 9.32 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 1.21 Total: -42.10 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.65 Total: -18.96 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.90 -3.86 -36.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329691021.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.044 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds