Wall clock time and date at job start Sun Mar 29 2020 23:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34644 * 116.99912 * 2 1 4 4 O 1.21368 * 120.00095 * 359.97438 * 3 2 1 5 5 C 1.48486 * 119.99850 * 180.02562 * 3 2 1 6 6 C 1.37940 * 120.21138 * 180.02562 * 5 3 2 7 7 C 1.41658 * 118.31984 * 179.97438 * 6 5 3 8 8 O 1.21907 * 120.71142 * 180.02562 * 7 6 5 9 9 N 1.34981 * 118.57224 * 359.74771 * 7 6 5 10 10 C 1.46498 * 119.89283 * 180.26212 * 9 7 6 11 11 C 1.53001 * 109.47137 * 270.23911 * 10 9 7 12 12 C 1.50697 * 109.47320 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00142 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00534 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99513 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00365 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46954 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47114 * 119.99896 * 16 14 12 19 19 H 1.48503 * 109.46902 * 239.99856 * 16 14 12 20 20 C 1.34780 * 120.21931 * 0.50480 * 9 7 6 21 21 N 1.30434 * 121.82910 * 359.47372 * 20 9 7 22 22 H 1.09004 * 109.47462 * 59.99902 * 1 2 3 23 23 H 1.08995 * 109.47312 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47687 * 300.00492 * 1 2 3 25 25 H 1.07993 * 120.83937 * 359.97438 * 6 5 3 26 26 H 1.09005 * 109.46898 * 30.23562 * 10 9 7 27 27 H 1.08995 * 109.47551 * 150.23759 * 10 9 7 28 28 H 1.09005 * 109.46941 * 299.99624 * 11 10 9 29 29 H 1.09001 * 109.47589 * 59.99901 * 11 10 9 30 30 H 0.97008 * 119.99997 * 179.97438 * 15 14 12 31 31 H 1.08002 * 119.08793 * 179.76523 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4022 2.2176 -0.0005 5 6 3.5460 1.2774 -0.0006 6 6 4.1768 2.5041 0.0000 7 6 5.5931 2.5315 -0.0001 8 8 6.1953 3.5914 0.0009 9 7 6.2615 1.3588 0.0046 10 6 7.7264 1.3534 0.0105 11 6 8.2423 1.3551 -1.4299 12 6 9.7492 1.3501 -1.4239 13 1 10.2855 1.3466 -0.4864 14 6 10.4435 1.3512 -2.6150 15 7 9.7905 1.3560 -3.7566 16 14 12.3115 1.3443 -2.6075 17 1 12.8007 1.3389 -1.2055 18 1 12.8049 0.1321 -3.3092 19 1 12.8137 2.5571 -3.3019 20 6 5.5856 0.1927 -0.0011 21 7 4.2818 0.1534 -0.0010 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 3.6054 3.4205 0.0004 26 1 8.0910 2.2408 0.5280 27 1 8.0845 0.4609 0.5236 28 1 7.8778 0.4676 -1.9474 29 1 7.8844 2.2476 -1.9431 30 1 10.2789 1.3571 -4.5948 31 1 6.1388 -0.7348 -0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339834696.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:16 Heat of formation + Delta-G solvation = -78.862142 kcal Electronic energy + Delta-G solvation = -17770.331226 eV Core-core repulsion = 14631.797920 eV Total energy + Delta-G solvation = -3138.533307 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.67554 -40.37633 -37.44995 -36.72345 -35.58010 -33.17237 -31.05098 -30.27650 -28.31133 -26.13685 -24.45881 -24.20612 -21.74666 -21.03969 -18.97101 -17.75980 -17.16179 -17.01023 -16.61103 -15.98297 -15.64938 -15.62582 -14.54708 -14.31030 -14.06899 -13.61571 -13.36616 -13.17050 -12.78931 -12.51425 -12.30168 -11.83818 -11.15538 -11.08813 -11.00790 -10.98534 -10.47388 -10.38084 -10.03442 -10.00048 -9.63381 -9.37103 -8.53649 -8.38002 -6.17620 -4.23144 0.20067 1.63514 2.32165 2.43071 2.76184 3.23106 3.31371 3.34316 3.71551 3.88191 4.32889 4.45999 4.72298 4.89926 4.98200 5.05377 5.19421 5.24353 5.31703 5.60456 5.67433 6.01328 6.04539 6.33947 6.40264 6.65033 7.32728 7.39627 7.47593 7.76517 7.79770 7.96903 8.12236 8.82036 9.42678 10.93669 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.045378 B = 0.004251 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.896418 B = 6584.969623 C = 6794.088378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.331 6.331 3 C 0.527 3.473 4 O -0.492 6.492 5 C 0.140 3.860 6 C -0.208 4.208 7 C 0.515 3.485 8 O -0.515 6.515 9 N -0.506 5.506 10 C 0.086 3.914 11 C 0.012 3.988 12 C -0.527 4.527 13 H 0.062 0.938 14 C 0.061 3.939 15 N -0.889 5.889 16 Si 0.899 3.101 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.283 1.283 20 C 0.388 3.612 21 N -0.529 5.529 22 H 0.064 0.936 23 H 0.104 0.896 24 H 0.064 0.936 25 H 0.166 0.834 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.024 0.976 29 H 0.027 0.973 30 H 0.263 0.737 31 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.765 -5.554 8.168 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.246 6.246 3 C 0.369 3.631 4 O -0.379 6.379 5 C 0.019 3.981 6 C -0.235 4.235 7 C 0.312 3.688 8 O -0.390 6.390 9 N -0.221 5.221 10 C -0.034 4.034 11 C -0.025 4.025 12 C -0.566 4.566 13 H 0.080 0.920 14 C -0.141 4.141 15 N -0.527 5.527 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.209 1.209 20 C 0.104 3.896 21 N -0.254 5.254 22 H 0.083 0.917 23 H 0.123 0.877 24 H 0.082 0.918 25 H 0.184 0.816 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -14.089 -5.169 7.988 17.001 hybrid contribution 1.130 0.736 -0.256 1.373 sum -12.960 -4.433 7.732 15.729 Atomic orbital electron populations 1.23362 0.76063 1.04022 1.02632 1.86687 1.23172 1.31490 1.83223 1.20814 0.87682 0.81809 0.72802 1.90848 1.65733 1.36261 1.45079 1.20130 0.90713 0.89998 0.97300 1.23487 0.93814 0.99522 1.06644 1.17130 0.88115 0.83925 0.79654 1.90981 1.69902 1.28353 1.49783 1.47228 1.12686 1.07427 1.54718 1.22714 0.72374 1.04217 1.04088 1.19455 0.96793 0.98505 0.87785 1.20984 0.90335 1.52368 0.92880 0.92021 1.25004 0.98981 0.94714 0.95439 1.69973 1.35762 1.49567 0.97442 0.86426 0.84936 0.77726 0.78271 1.19551 1.20850 1.20863 1.24974 0.88352 0.90974 0.85333 1.68404 1.04277 1.28486 1.24238 0.91693 0.87714 0.91767 0.81622 0.88641 0.89143 0.95820 0.95457 0.92697 0.77196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.33 -4.10 10.41 -40.34 -0.42 -4.52 16 3 C 0.53 7.48 7.97 34.96 0.28 7.76 16 4 O -0.49 -7.61 16.16 -19.16 -0.31 -7.92 16 5 C 0.14 2.10 6.77 -82.65 -0.56 1.54 16 6 C -0.21 -3.34 9.67 -38.39 -0.37 -3.71 16 7 C 0.52 9.56 7.47 -14.86 -0.11 9.45 16 8 O -0.51 -11.44 16.77 5.00 0.08 -11.36 16 9 N -0.51 -8.35 2.57 -120.97 -0.31 -8.66 16 10 C 0.09 1.55 5.30 -4.04 -0.02 1.53 16 11 C 0.01 0.29 5.30 -27.88 -0.15 0.14 16 12 C -0.53 -13.81 9.11 -34.44 -0.31 -14.13 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 16 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 C 0.39 5.16 11.45 -90.67 -1.04 4.13 16 21 N -0.53 -7.54 10.20 -10.84 -0.11 -7.65 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.17 2.51 7.68 -52.49 -0.40 2.11 16 26 H 0.10 1.85 7.45 -51.93 -0.39 1.46 16 27 H 0.09 1.32 8.01 -51.93 -0.42 0.91 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.21 1.93 8.01 -52.49 -0.42 1.51 16 LS Contribution 287.20 15.07 4.33 4.33 Total: -1.00 -32.93 287.20 -5.62 -38.55 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -3.28 Total: -3.05 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -1.31 Total: 9.62 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.32 Total: -41.29 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.65 Total: -23.79 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.93 -5.62 -38.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339834696.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.317 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds