Wall clock time and date at job start Sun Mar 29 2020 23:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 119.99879 * 2 1 4 4 H 1.48495 * 109.47307 * 269.99901 * 3 2 1 5 5 H 1.48499 * 109.47168 * 30.00108 * 3 2 1 6 6 H 1.48500 * 109.47004 * 149.99710 * 3 2 1 7 7 C 1.38953 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00132 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00009 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99902 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99825 * 180.02562 * 10 9 7 13 13 N 1.46495 * 109.46736 * 179.97438 * 12 10 9 14 14 C 1.34785 * 119.99847 * 179.97438 * 13 12 10 15 15 O 1.21280 * 119.99805 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99810 * 179.97438 * 14 13 12 17 17 C 1.50700 * 109.46699 * 180.02562 * 16 14 13 18 18 C 1.41385 * 126.58187 * 90.00677 * 17 16 14 19 19 C 1.34512 * 106.83926 * 180.25995 * 18 17 16 20 20 O 1.34305 * 108.42433 * 359.63135 * 19 18 17 21 21 C 1.34305 * 109.47225 * 0.37505 * 20 19 18 22 22 H 0.96994 * 120.00034 * 0.02562 * 1 2 3 23 23 H 0.97004 * 119.99550 * 359.97438 * 9 7 2 24 24 H 1.09005 * 109.47197 * 59.99835 * 12 10 9 25 25 H 1.08999 * 109.46738 * 299.99731 * 12 10 9 26 26 H 0.97003 * 120.00676 * 0.02562 * 13 12 10 27 27 H 1.09005 * 109.47178 * 60.00305 * 16 14 13 28 28 H 1.09000 * 109.47367 * 300.00226 * 16 14 13 29 29 H 1.08002 * 126.57514 * 359.97438 * 18 17 16 30 30 H 1.07998 * 125.78467 * 179.77218 * 19 18 17 31 31 H 1.08000 * 125.78555 * 179.79179 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1958 -5.9764 -0.0005 14 6 1.7466 -7.2471 -0.0006 15 8 0.5542 -7.4688 -0.0007 16 6 2.7260 -8.3925 -0.0017 17 6 1.9724 -9.6976 -0.0021 18 6 1.5508 -10.4267 -1.1377 19 6 0.9128 -11.5205 -0.6837 20 8 0.9327 -11.4968 0.6589 21 6 1.5714 -10.3921 1.0778 22 1 -0.4850 0.8400 -0.0004 23 1 0.3534 -2.3906 0.0005 24 1 0.6174 -4.9205 -0.8903 25 1 0.6169 -4.9208 0.8897 26 1 3.1496 -5.7992 -0.0001 27 1 3.3533 -8.3351 0.8879 28 1 3.3520 -8.3345 -0.8921 29 1 1.7066 -10.1550 -2.1713 30 1 0.4630 -12.2886 -1.2953 31 1 1.7355 -10.1095 2.1072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341883965.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:29 Heat of formation + Delta-G solvation = -63.149092 kcal Electronic energy + Delta-G solvation = -17293.936076 eV Core-core repulsion = 14156.084138 eV Total energy + Delta-G solvation = -3137.851938 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.58965 -39.49944 -38.10877 -34.48865 -33.99716 -33.64679 -31.40551 -30.55639 -28.63733 -26.79542 -24.41988 -21.66223 -21.07872 -19.94870 -19.53511 -18.15301 -17.54186 -17.08080 -15.90594 -15.57050 -15.46144 -15.33421 -14.69755 -14.43970 -14.20711 -13.90323 -13.25043 -13.02993 -12.84223 -12.47790 -12.19241 -12.00051 -11.64326 -11.50281 -11.13381 -10.47102 -10.33274 -9.97421 -9.65054 -9.54204 -8.78760 -8.65688 -8.57169 -8.11662 -6.52837 -3.95001 1.72609 2.48933 2.84924 3.08816 3.10744 3.21078 3.26034 3.53676 3.72661 4.10836 4.67595 4.72217 4.87070 4.93233 5.15644 5.16704 5.33036 5.43855 5.62881 5.91078 5.93163 5.96841 6.06113 6.09604 6.42025 6.68729 7.04930 7.44645 7.82411 7.90686 8.42758 8.48524 9.03129 9.37866 9.85638 10.64062 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.073904 B = 0.003334 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.777893 B = 8397.049315 C = 8579.542498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.109 3.891 13 N -0.709 5.709 14 C 0.510 3.490 15 O -0.542 6.542 16 C -0.070 4.070 17 C -0.160 4.160 18 C -0.198 4.198 19 C -0.047 4.047 20 O -0.179 6.179 21 C -0.029 4.029 22 H 0.274 0.726 23 H 0.396 0.604 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.411 0.589 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.146 0.854 30 H 0.200 0.800 31 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -17.380 -0.210 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.213 3.787 11 O -0.485 6.485 12 C -0.018 4.018 13 N -0.364 5.364 14 C 0.296 3.704 15 O -0.419 6.419 16 C -0.111 4.111 17 C -0.161 4.161 18 C -0.217 4.217 19 C -0.115 4.115 20 O -0.074 6.074 21 C -0.096 4.096 22 H 0.084 0.916 23 H 0.230 0.770 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.249 0.751 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.164 0.836 30 H 0.217 0.783 31 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.254 -17.547 -0.020 17.691 hybrid contribution 0.217 1.225 -0.226 1.264 sum 2.471 -16.322 -0.246 16.509 Atomic orbital electron populations 1.69613 1.06029 1.28554 1.49278 1.25332 0.95665 0.99954 0.96763 0.85808 0.79231 0.80467 0.78500 1.20256 1.20788 1.19297 1.19735 0.93469 0.82011 1.48300 0.87663 1.41805 1.09492 1.04497 1.62579 1.19759 0.88296 0.85013 0.85589 1.90492 1.13710 1.86848 1.57417 1.20934 0.91934 0.85827 1.03153 1.45732 1.11547 1.04634 1.74485 1.20521 0.89752 0.83599 0.76575 1.90701 1.16820 1.84815 1.49590 1.19977 0.96857 0.88952 1.05266 1.19820 1.05418 0.97716 0.93195 1.21686 1.03955 0.96243 0.99838 1.23919 1.04938 1.01751 0.80864 1.84048 1.60745 1.39850 1.22773 1.23788 0.99302 0.86893 0.99663 0.91567 0.77032 0.89960 0.89941 0.75136 0.87971 0.87849 0.83631 0.78310 0.78319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 13.05 55.50 0.72 -23.15 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.46 29.55 -169.99 -5.02 15.43 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.31 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 10 C 0.43 9.76 7.85 -10.99 -0.09 9.68 16 11 O -0.60 -15.15 15.24 5.55 0.08 -15.07 16 12 C 0.11 2.01 6.15 -5.20 -0.03 1.98 16 13 N -0.71 -11.52 5.53 -61.47 -0.34 -11.86 16 14 C 0.51 7.85 7.82 -10.98 -0.09 7.77 16 15 O -0.54 -10.32 16.03 5.56 0.09 -10.23 16 16 C -0.07 -0.79 6.22 -29.03 -0.18 -0.97 16 17 C -0.16 -1.94 4.66 -104.74 -0.49 -2.42 16 18 C -0.20 -2.26 10.87 -39.70 -0.43 -2.69 16 19 C -0.05 -0.48 12.09 29.42 0.36 -0.13 16 20 O -0.18 -2.09 10.65 5.70 0.06 -2.02 16 21 C -0.03 -0.32 12.01 29.42 0.35 0.03 16 22 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 23 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 24 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 25 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.41 6.41 7.44 -40.82 -0.30 6.10 16 27 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 287.06 15.07 4.33 4.33 Total: -1.00 -32.92 287.06 -4.07 -36.99 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -3.10 Total: 13.85 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -0.84 Total: 5.39 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.33 Total: -48.66 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: 0.23 Total: -27.32 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.92 -4.07 -36.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341883965.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.163 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds