Wall clock time and date at job start Sun Mar 29 2020 23:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 119.99879 * 2 1 4 4 H 1.48495 * 109.47307 * 269.99901 * 3 2 1 5 5 H 1.48499 * 109.47168 * 30.00108 * 3 2 1 6 6 H 1.48500 * 109.47004 * 149.99710 * 3 2 1 7 7 C 1.38953 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00132 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00009 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99902 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99825 * 180.02562 * 10 9 7 13 13 N 1.46495 * 109.46736 * 179.97438 * 12 10 9 14 14 C 1.34785 * 119.99847 * 179.97438 * 13 12 10 15 15 O 1.21280 * 119.99805 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99810 * 179.97438 * 14 13 12 17 17 C 1.50700 * 109.46699 * 180.02562 * 16 14 13 18 18 C 1.41385 * 126.58187 * 90.00677 * 17 16 14 19 19 C 1.34512 * 106.83926 * 180.25995 * 18 17 16 20 20 O 1.34305 * 108.42433 * 359.63135 * 19 18 17 21 21 C 1.34305 * 109.47225 * 0.37505 * 20 19 18 22 22 H 0.96994 * 120.00034 * 0.02562 * 1 2 3 23 23 H 0.97004 * 119.99550 * 359.97438 * 9 7 2 24 24 H 1.09005 * 109.47197 * 59.99835 * 12 10 9 25 25 H 1.08999 * 109.46738 * 299.99731 * 12 10 9 26 26 H 0.97003 * 120.00676 * 0.02562 * 13 12 10 27 27 H 1.09005 * 109.47178 * 60.00305 * 16 14 13 28 28 H 1.09000 * 109.47367 * 300.00226 * 16 14 13 29 29 H 1.08002 * 126.57514 * 359.97438 * 18 17 16 30 30 H 1.07998 * 125.78467 * 179.77218 * 19 18 17 31 31 H 1.08000 * 125.78555 * 179.79179 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1958 -5.9764 -0.0005 14 6 1.7466 -7.2471 -0.0006 15 8 0.5542 -7.4688 -0.0007 16 6 2.7260 -8.3925 -0.0017 17 6 1.9724 -9.6976 -0.0021 18 6 1.5508 -10.4267 -1.1377 19 6 0.9128 -11.5205 -0.6837 20 8 0.9327 -11.4968 0.6589 21 6 1.5714 -10.3921 1.0778 22 1 -0.4850 0.8400 -0.0004 23 1 0.3534 -2.3906 0.0005 24 1 0.6174 -4.9205 -0.8903 25 1 0.6169 -4.9208 0.8897 26 1 3.1496 -5.7992 -0.0001 27 1 3.3533 -8.3351 0.8879 28 1 3.3520 -8.3345 -0.8921 29 1 1.7066 -10.1550 -2.1713 30 1 0.4630 -12.2886 -1.2953 31 1 1.7355 -10.1095 2.1072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341883965.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:29 Heat of formation + Delta-G solvation = -87.978680 kcal Electronic energy + Delta-G solvation = -17295.012767 eV Core-core repulsion = 14156.084138 eV Total energy + Delta-G solvation = -3138.928630 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.40601 -40.92073 -39.84161 -36.25557 -35.27458 -34.89644 -33.38135 -31.46241 -29.83025 -28.13260 -26.23744 -22.46742 -22.18062 -21.37858 -20.92844 -20.06328 -18.67454 -18.22323 -17.24495 -16.93356 -16.81812 -16.69320 -16.24941 -15.72802 -15.65503 -15.39197 -14.70854 -14.16853 -13.91396 -13.64168 -13.56052 -13.46309 -13.31175 -12.90919 -12.46120 -12.39933 -12.12643 -11.57269 -11.13971 -10.59111 -10.50400 -10.18503 -10.08096 -9.39435 -8.51566 -6.01972 0.91240 1.36298 1.42835 1.55114 1.60449 1.64180 1.90831 2.18640 2.33562 2.41060 3.14057 3.15681 3.80200 3.98102 4.02405 4.17916 4.27226 4.42205 4.46009 4.58844 4.66100 4.82725 5.14463 5.29701 5.34082 5.38310 5.61562 5.91375 6.23578 6.46021 6.57903 7.02904 7.22508 7.44118 7.93633 8.65401 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.073904 B = 0.003334 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.777893 B = 8397.049315 C = 8579.542498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.433 3.567 11 O -0.623 6.623 12 C 0.121 3.879 13 N -0.709 5.709 14 C 0.512 3.488 15 O -0.580 6.580 16 C -0.061 4.061 17 C -0.183 4.183 18 C -0.224 4.224 19 C -0.045 4.045 20 O -0.190 6.190 21 C -0.038 4.038 22 H 0.280 0.720 23 H 0.398 0.602 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.415 0.585 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.155 0.845 30 H 0.234 0.766 31 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.009 -17.921 -0.214 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.467 4.467 8 H 0.105 0.895 9 N -0.196 5.196 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.007 4.007 13 N -0.363 5.363 14 C 0.300 3.700 15 O -0.459 6.459 16 C -0.101 4.101 17 C -0.185 4.185 18 C -0.243 4.243 19 C -0.112 4.112 20 O -0.086 6.086 21 C -0.105 4.105 22 H 0.089 0.911 23 H 0.232 0.768 24 H 0.108 0.892 25 H 0.109 0.891 26 H 0.254 0.746 27 H 0.148 0.852 28 H 0.142 0.858 29 H 0.172 0.828 30 H 0.250 0.750 31 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.688 -18.108 -0.025 18.307 hybrid contribution 0.069 1.304 -0.239 1.328 sum 2.757 -16.804 -0.264 17.030 Atomic orbital electron populations 1.69680 1.07056 1.29653 1.49324 1.26142 0.96526 1.02730 0.95759 0.84861 0.77941 0.76431 0.78722 1.19556 1.19696 1.19342 1.19754 0.93001 0.83548 1.50402 0.89482 1.41865 1.09581 1.04679 1.63453 1.20436 0.88144 0.85908 0.83507 1.90469 1.15081 1.87547 1.57991 1.20733 0.91864 0.84159 1.03906 1.45760 1.11336 1.04500 1.74745 1.21256 0.89954 0.83818 0.74929 1.90685 1.18752 1.85229 1.51280 1.20013 0.95951 0.86501 1.07597 1.20091 1.06297 0.98286 0.93811 1.21994 1.04888 0.97006 1.00370 1.24621 1.03948 1.02118 0.80523 1.84055 1.60855 1.40124 1.23592 1.24304 0.98837 0.86682 1.00718 0.91068 0.76769 0.89233 0.89074 0.74613 0.85174 0.85824 0.82777 0.74965 0.76148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.70 13.05 21.66 0.28 -48.42 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 1.00 41.51 29.55 68.60 2.03 43.53 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.34 -18.53 9.68 84.04 0.81 -17.71 16 8 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -28.05 5.29 -306.98 -1.62 -29.67 16 10 C 0.43 19.77 7.85 87.66 0.69 20.46 16 11 O -0.62 -31.63 15.24 -3.07 -0.05 -31.67 16 12 C 0.12 4.39 6.15 85.63 0.53 4.92 16 13 N -0.71 -22.13 5.53 -466.78 -2.58 -24.71 16 14 C 0.51 15.04 7.82 87.66 0.69 15.73 16 15 O -0.58 -21.56 16.03 -3.03 -0.05 -21.61 16 16 C -0.06 -1.23 6.22 29.10 0.18 -1.05 16 17 C -0.18 -4.14 4.66 -19.94 -0.09 -4.23 16 18 C -0.22 -4.80 10.87 22.19 0.24 -4.56 16 19 C -0.05 -0.85 12.09 66.97 0.81 -0.04 16 20 O -0.19 -4.18 10.65 -2.52 -0.03 -4.20 16 21 C -0.04 -0.80 12.01 66.97 0.80 0.00 16 22 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 23 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 24 H 0.09 3.14 8.14 -2.38 -0.02 3.13 16 25 H 0.09 3.17 8.14 -2.39 -0.02 3.16 16 26 H 0.42 12.41 7.44 -92.71 -0.69 11.72 16 27 H 0.13 1.88 8.14 -2.38 -0.02 1.87 16 28 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.23 2.32 8.06 -2.91 -0.02 2.29 16 31 H 0.22 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -70.08 287.06 2.87 -67.21 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -0.24 Total: 36.13 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 5.12 Total: 13.42 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -3.92 Total: -102.80 kcal Atomic # 8 Polarization: -57.37 SS G_CDS: -0.12 Total: -57.49 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -70.08 2.87 -67.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341883965.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.770 kcal (2) G-P(sol) polarization free energy of solvation -70.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds