Wall clock time and date at job start Sun Mar 29 2020 23:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86808 * 119.99933 * 2 1 4 4 H 1.48492 * 109.47142 * 269.99515 * 3 2 1 5 5 H 1.48499 * 109.47003 * 30.00248 * 3 2 1 6 6 H 1.48507 * 109.46833 * 149.99761 * 3 2 1 7 7 C 1.40047 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00636 * 180.02562 * 7 2 1 9 9 C 1.46381 * 119.99801 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99901 * 0.02562 * 9 7 2 11 11 N 1.34776 * 120.00106 * 180.02562 * 9 7 2 12 12 C 1.48146 * 127.83797 * 180.02562 * 11 9 7 13 13 C 1.54388 * 104.61575 * 219.32646 * 12 11 9 14 14 H 1.08997 * 110.34633 * 95.00304 * 13 12 11 15 15 C 1.52998 * 110.34262 * 217.26197 * 13 12 11 16 16 F 1.39906 * 109.47129 * 58.54010 * 15 13 12 17 17 F 1.39895 * 109.47413 * 178.54454 * 15 13 12 18 18 F 1.39905 * 109.46943 * 298.54745 * 15 13 12 19 19 C 1.54285 * 104.96009 * 336.12861 * 13 12 11 20 20 H 1.08996 * 110.34663 * 241.13214 * 19 13 12 21 21 N 1.46902 * 110.34237 * 118.87131 * 19 13 12 22 22 C 1.48142 * 127.83826 * 359.68419 * 11 9 7 23 23 H 0.97007 * 119.99951 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.40130 * 338.10589 * 12 11 9 25 25 H 1.08996 * 110.40809 * 100.54023 * 12 11 9 26 26 H 1.00901 * 111.00052 * 180.02562 * 21 19 13 27 27 H 1.00904 * 111.00277 * 303.95715 * 21 19 13 28 28 H 1.09002 * 110.40643 * 259.46052 * 22 11 9 29 29 H 1.09004 * 110.41038 * 21.88685 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4883 2.0464 -1.4000 5 1 1.4381 2.6527 0.7001 6 1 3.5382 1.4402 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0027 12 6 1.3901 -5.0197 0.0034 13 6 2.3130 -5.8158 0.9511 14 1 1.8931 -5.8406 1.9566 15 6 2.5179 -7.2374 0.4238 16 9 3.0733 -7.1834 -0.8592 17 9 3.3823 -7.9313 1.2773 18 9 1.2854 -7.8973 0.3709 19 6 3.6492 -5.0444 0.9467 20 1 4.4514 -5.6782 0.5689 21 7 3.9677 -4.5671 2.2990 22 6 3.4165 -3.8498 -0.0035 23 1 -0.4850 0.8401 -0.0004 24 1 0.3687 -5.0138 0.3840 25 1 1.4202 -5.4429 -1.0006 26 1 4.8403 -4.0604 2.3074 27 1 3.2182 -4.0019 2.6689 28 1 3.7627 -4.0904 -1.0087 29 1 3.9242 -2.9611 0.3716 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580045677.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:02 Heat of formation + Delta-G solvation = -211.953226 kcal Electronic energy + Delta-G solvation = -19370.864285 eV Core-core repulsion = 15684.702975 eV Total energy + Delta-G solvation = -3686.161310 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.13486 -48.61642 -48.58137 -40.49640 -38.13610 -34.76108 -33.99656 -32.50034 -28.77242 -28.33683 -26.30229 -24.09241 -21.74939 -21.23990 -19.52549 -19.26773 -19.14739 -18.21535 -17.72359 -16.42006 -16.16693 -15.99369 -15.71498 -15.60815 -15.43103 -15.10646 -15.01916 -14.77917 -14.72412 -14.41141 -13.99088 -13.52775 -13.13471 -12.98463 -12.89026 -12.73627 -12.65967 -12.31609 -12.13494 -12.01690 -10.97511 -10.09789 -9.88153 -9.18576 -8.34786 -6.90786 1.39591 1.40233 1.55741 1.65781 2.19196 2.38759 2.56418 2.79248 2.89617 2.94725 3.43933 3.59991 3.63074 3.83975 3.99997 4.16275 4.28621 4.57831 4.75112 4.79603 4.84941 5.29227 5.38058 5.91882 6.05007 6.28846 6.50365 6.82123 7.37868 8.37428 8.60947 Molecular weight = 252.08amu Principal moments of inertia in cm(-1) A = 0.039772 B = 0.006165 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.844214 B = 4540.993667 C = 4903.994413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.030 3.970 3 Si 0.998 3.002 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.559 4.559 8 H 0.090 0.910 9 C 0.559 3.441 10 O -0.628 6.628 11 N -0.648 5.648 12 C 0.114 3.886 13 C -0.138 4.138 14 H 0.130 0.870 15 C 0.472 3.528 16 F -0.181 7.181 17 F -0.175 7.175 18 F -0.186 7.186 19 C 0.098 3.902 20 H 0.118 0.882 21 N -0.830 5.830 22 C 0.077 3.923 23 H 0.276 0.724 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.359 0.641 27 H 0.343 0.657 28 H 0.070 0.930 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.751 -9.302 2.040 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.185 4.185 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.168 1.168 7 C -0.595 4.595 8 H 0.108 0.892 9 C 0.367 3.633 10 O -0.515 6.515 11 N -0.385 5.385 12 C -0.011 4.011 13 C -0.159 4.159 14 H 0.148 0.852 15 C 0.418 3.582 16 F -0.162 7.162 17 F -0.157 7.157 18 F -0.167 7.167 19 C -0.015 4.015 20 H 0.136 0.864 21 N -0.360 5.360 22 C -0.048 4.048 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.174 0.826 27 H 0.156 0.844 28 H 0.089 0.911 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.900 -9.914 2.243 14.189 hybrid contribution -0.268 1.272 -0.665 1.460 sum 9.632 -8.642 1.578 13.037 Atomic orbital electron populations 1.70179 1.09588 1.29134 1.36044 1.26978 0.95483 1.04918 0.91168 0.85014 0.78889 0.75040 0.79370 1.18844 1.19930 1.16835 1.21310 0.94607 0.89151 1.54479 0.89169 1.18422 0.86249 0.82712 0.75954 1.90583 1.16170 1.86888 1.57883 1.48975 1.06891 1.03644 1.79015 1.21915 0.97256 0.83961 0.97967 1.23381 1.00204 0.89238 1.03064 0.85211 1.20101 0.73660 0.88896 0.75573 1.93176 1.85669 1.96731 1.40660 1.93199 1.70490 1.81588 1.70400 1.93185 1.43911 1.83357 1.96282 1.22294 0.94525 0.94880 0.89827 0.86391 1.59007 1.09140 1.48226 1.19627 1.23217 0.82158 0.98990 1.00438 0.91441 0.91756 0.91490 0.82632 0.84442 0.91146 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.93 11.83 21.83 0.26 -48.67 15 2 C 0.03 1.61 5.50 85.31 0.47 2.08 15 3 Si 1.00 39.11 29.56 68.60 2.03 41.14 15 4 H -0.26 -9.96 7.11 99.48 0.71 -9.25 15 5 H -0.27 -10.49 7.11 99.48 0.71 -9.78 15 6 H -0.25 -8.76 7.11 99.48 0.71 -8.05 15 7 C -0.56 -30.15 9.07 24.83 0.23 -29.92 15 8 H 0.09 4.30 6.50 -2.91 -0.02 4.28 15 9 C 0.56 31.44 7.84 86.36 0.68 32.12 15 10 O -0.63 -41.56 15.29 -4.30 -0.07 -41.63 15 11 N -0.65 -27.88 3.32 -812.98 -2.70 -30.58 15 12 C 0.11 4.15 6.33 86.53 0.55 4.70 15 13 C -0.14 -3.83 2.82 -9.89 -0.03 -3.86 15 14 H 0.13 3.55 7.95 -2.39 -0.02 3.54 15 15 C 0.47 12.09 2.51 71.98 0.18 12.27 15 16 F -0.18 -4.66 16.04 44.97 0.72 -3.94 15 17 F -0.18 -4.32 17.07 44.97 0.77 -3.55 15 18 F -0.19 -5.05 17.11 44.97 0.77 -4.28 15 19 C 0.10 2.48 3.50 45.83 0.16 2.64 15 20 H 0.12 2.52 7.39 -2.39 -0.02 2.50 15 21 N -0.83 -19.37 9.16 -164.89 -1.51 -20.88 15 22 C 0.08 2.45 6.57 86.54 0.57 3.02 15 23 H 0.28 14.90 8.29 -92.70 -0.77 14.13 15 24 H 0.06 2.63 7.88 -2.39 -0.02 2.62 15 25 H 0.07 2.34 7.32 -2.39 -0.02 2.32 15 26 H 0.36 6.85 9.08 -89.69 -0.81 6.03 15 27 H 0.34 9.20 8.99 -89.69 -0.81 8.40 15 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 29 H 0.08 2.65 6.61 -2.39 -0.02 2.64 15 Total: -1.00 -70.59 262.98 2.68 -67.91 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -0.40 Total: 21.42 kcal Atomic # 6 Polarization: 20.26 SS G_CDS: 2.80 Total: 23.06 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -3.95 Total: -100.13 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -0.07 Total: -41.63 kcal Atomic # 9 Polarization: -14.03 SS G_CDS: 2.26 Total: -11.77 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -70.59 2.68 -67.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580045677.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.040 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds