Wall clock time and date at job start Sun Mar 29 2020 23:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39806 * 126.45493 * 2 1 4 4 C 1.35485 * 107.87510 * 180.24388 * 3 2 1 5 5 N 1.35583 * 108.88385 * 359.76401 * 4 3 2 6 6 H 0.97003 * 125.68626 * 180.02562 * 5 4 3 7 7 C 1.37675 * 108.63625 * 359.97438 * 5 4 3 8 8 C 1.46547 * 126.23960 * 179.97438 * 7 5 4 9 9 O 1.21744 * 119.99778 * 188.28284 * 8 7 5 10 10 N 1.34774 * 120.00200 * 8.27986 * 8 7 5 11 11 C 1.36877 * 119.99866 * 173.94931 * 10 8 7 12 12 H 1.07997 * 120.00104 * 344.37137 * 11 10 8 13 13 C 1.39013 * 119.99762 * 164.63823 * 11 10 8 14 14 N 1.31393 * 119.99975 * 42.20707 * 13 11 10 15 15 Si 1.86797 * 119.99961 * 222.20259 * 13 11 10 16 16 H 1.48500 * 109.47539 * 60.00610 * 15 13 11 17 17 H 1.48501 * 109.46860 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47347 * 300.00035 * 15 13 11 19 19 C 1.46492 * 120.00044 * 353.95367 * 10 8 7 20 20 C 1.50706 * 109.47004 * 79.06332 * 19 10 8 21 21 O 1.20817 * 120.00170 * 0.02562 * 20 19 10 22 22 O 1.34230 * 120.00042 * 179.97438 * 20 19 10 23 23 H 1.08995 * 109.47740 * 270.16534 * 1 2 3 24 24 H 1.09002 * 109.47448 * 30.16843 * 1 2 3 25 25 H 1.09003 * 109.47188 * 150.16404 * 1 2 3 26 26 H 1.08000 * 126.06363 * 0.02562 * 3 2 1 27 27 H 1.08005 * 125.55662 * 179.73939 * 4 3 2 28 28 H 0.96998 * 120.00023 * 179.97438 * 14 13 11 29 29 H 1.09000 * 109.47368 * 199.05746 * 19 10 8 30 30 H 1.08998 * 109.47579 * 319.06269 * 19 10 8 31 31 H 0.96691 * 117.00421 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3377 1.1245 0.0000 4 6 3.6219 0.6928 -0.0055 5 7 3.6291 -0.6630 -0.0037 6 1 4.4200 -1.2247 -0.0063 7 6 2.3269 -1.1099 0.0037 8 6 1.8912 -2.5091 0.0074 9 8 0.7132 -2.7801 -0.1380 10 7 2.7944 -3.4958 0.1716 11 6 2.3756 -4.7926 0.2992 12 1 1.3406 -5.0065 0.5212 13 6 3.2838 -5.8343 0.1485 14 7 4.4809 -5.7445 0.6825 15 14 2.8021 -7.3616 -0.8132 16 1 2.4583 -6.9812 -2.2068 17 1 3.9389 -8.3170 -0.8266 18 1 1.6263 -8.0011 -0.1701 19 6 4.2243 -3.1803 0.2136 20 6 4.5819 -2.6501 1.5783 21 8 3.7298 -2.5468 2.4286 22 8 5.8472 -2.2935 1.8494 23 1 -0.3634 0.0030 1.0276 24 1 -0.3634 0.8885 -0.5164 25 1 -0.3634 -0.8915 -0.5113 26 1 2.0133 2.1546 0.0004 27 1 4.4972 1.3256 -0.0109 28 1 5.1145 -6.4715 0.5777 29 1 4.8016 -4.0826 0.0118 30 1 4.4526 -2.4268 -0.5402 31 1 6.0283 -1.9594 2.7385 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600312174.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:04 Heat of formation + Delta-G solvation = -62.461328 kcal Electronic energy + Delta-G solvation = -19333.942045 eV Core-core repulsion = 16196.119931 eV Total energy + Delta-G solvation = -3137.822114 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.62037 -41.04388 -39.71743 -37.28805 -36.77012 -34.32820 -33.19303 -30.90153 -29.67090 -28.13038 -26.51610 -23.44485 -22.65336 -21.96213 -19.86627 -19.45709 -19.07172 -18.60703 -17.63133 -17.46389 -16.52375 -16.20692 -15.99114 -15.80248 -14.80256 -14.69272 -14.45929 -14.05335 -13.88895 -13.72203 -13.56733 -13.48155 -13.08407 -12.74494 -12.47399 -12.44094 -12.41530 -12.10669 -11.81246 -10.84060 -10.62083 -10.16364 -9.65009 -9.03465 -8.73491 -5.94233 0.60689 1.18205 1.34633 1.43628 1.53658 1.85718 1.97863 2.19103 2.28793 2.36854 2.82689 2.98509 3.69687 3.91441 4.28052 4.32737 4.44916 4.50524 4.78802 4.91284 4.92159 5.06722 5.20465 5.39782 5.51391 5.59019 5.76262 5.97743 6.12129 6.31938 6.55188 6.94349 6.99543 7.19420 7.80473 8.32522 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.023960 B = 0.009396 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.338883 B = 2979.250777 C = 3811.913293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.116 4.116 3 C -0.215 4.215 4 C 0.020 3.980 5 N -0.555 5.555 6 H 0.417 0.583 7 C -0.064 4.064 8 C 0.510 3.490 9 O -0.604 6.604 10 N -0.435 5.435 11 C -0.367 4.367 12 H 0.080 0.920 13 C 0.025 3.975 14 N -0.851 5.851 15 Si 0.976 3.024 16 H -0.272 1.272 17 H -0.261 1.261 18 H -0.276 1.276 19 C 0.074 3.926 20 C 0.469 3.531 21 O -0.541 6.541 22 O -0.507 6.507 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.051 0.949 26 H 0.170 0.830 27 H 0.216 0.784 28 H 0.290 0.710 29 H 0.176 0.824 30 H 0.108 0.892 31 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.368 9.586 -2.335 12.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C -0.239 4.239 4 C -0.115 4.115 5 N -0.162 5.162 6 H 0.265 0.735 7 C -0.176 4.176 8 C 0.303 3.697 9 O -0.491 6.491 10 N -0.153 5.153 11 C -0.492 4.492 12 H 0.098 0.902 13 C -0.180 4.180 14 N -0.487 5.487 15 Si 0.798 3.202 16 H -0.197 1.197 17 H -0.185 1.185 18 H -0.201 1.201 19 C -0.052 4.052 20 C 0.310 3.690 21 O -0.430 6.430 22 O -0.320 6.320 23 H 0.073 0.927 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.187 0.813 27 H 0.232 0.768 28 H 0.101 0.899 29 H 0.192 0.808 30 H 0.125 0.875 31 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 6.826 9.034 -2.506 11.597 hybrid contribution 0.141 -0.982 0.728 1.231 sum 6.967 8.052 -1.779 10.795 Atomic orbital electron populations 1.20237 0.89704 1.02548 1.01426 1.20273 0.96361 0.91678 1.04162 1.21056 0.91695 0.98783 1.12330 1.22797 1.00757 0.82637 1.05274 1.43433 1.06711 1.08600 1.57431 0.73461 1.20367 0.85144 0.93232 1.18888 1.17360 0.85625 0.83802 0.82939 1.90573 1.17912 1.83475 1.57113 1.43580 1.03688 1.06688 1.61357 1.19388 0.96524 0.81127 1.52207 0.90235 1.25938 0.94848 1.02185 0.95051 1.69861 1.09107 1.35639 1.34134 0.85300 0.78684 0.76808 0.79424 1.19730 1.18466 1.20116 1.22771 0.86280 1.06250 0.89901 1.24351 0.79911 0.72604 0.92094 1.90685 1.51489 1.51209 1.49661 1.84483 1.29370 1.76810 1.41313 0.92668 0.89311 0.93007 0.81275 0.76765 0.89921 0.80777 0.87489 0.71733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.05 9.92 71.24 0.71 -2.35 16 2 C -0.12 -4.56 6.21 -19.54 -0.12 -4.69 16 3 C -0.21 -6.36 10.76 22.01 0.24 -6.12 16 4 C 0.02 0.53 11.89 83.48 0.99 1.52 16 5 N -0.55 -19.12 4.64 -183.57 -0.85 -19.98 16 6 H 0.42 13.31 3.75 -92.71 -0.35 12.96 16 7 C -0.06 -2.84 6.35 40.34 0.26 -2.59 16 8 C 0.51 27.74 7.16 86.41 0.62 28.36 16 9 O -0.60 -36.54 14.46 -4.49 -0.06 -36.60 16 10 N -0.44 -23.19 2.26 -644.27 -1.45 -24.64 16 11 C -0.37 -21.01 9.22 84.09 0.78 -20.23 16 12 H 0.08 5.01 7.54 -2.91 -0.02 4.99 16 13 C 0.03 1.26 4.96 84.94 0.42 1.68 16 14 N -0.85 -41.16 10.61 21.68 0.23 -40.93 16 15 Si 0.98 40.25 29.69 68.60 2.04 42.28 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 19 C 0.07 3.20 4.97 85.64 0.43 3.63 16 20 C 0.47 19.38 5.94 71.24 0.42 19.81 16 21 O -0.54 -27.34 16.67 21.99 0.37 -26.97 16 22 O -0.51 -15.00 13.42 -51.42 -0.69 -15.69 16 23 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.05 2.25 6.36 -2.39 -0.02 2.23 16 26 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 27 H 0.22 3.29 8.06 -2.91 -0.02 3.27 16 28 H 0.29 12.67 8.31 -92.71 -0.77 11.90 16 29 H 0.18 7.84 4.65 -2.40 -0.01 7.83 16 30 H 0.11 3.88 5.16 -2.39 -0.01 3.86 16 31 H 0.42 8.65 9.10 -74.06 -0.67 7.98 16 Total: -1.00 -75.32 267.73 4.49 -70.83 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.18 Total: 32.67 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 4.74 Total: 19.03 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -2.08 Total: -85.55 kcal Atomic # 8 Polarization: -78.88 SS G_CDS: -0.39 Total: -79.27 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.04 Total: 42.28 kcal Total: -75.32 4.49 -70.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600312174.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.371 kcal (2) G-P(sol) polarization free energy of solvation -75.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds