Wall clock time and date at job start Sun Mar 29 2020 23:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00367 * 2 1 4 4 H 1.48502 * 109.46864 * 240.00269 * 3 2 1 5 5 H 1.48499 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47350 * 119.99939 * 3 2 1 7 7 C 1.37881 * 119.99383 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99627 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00337 * 0.02562 * 7 2 1 10 10 C 1.53511 * 114.17051 * 180.02562 * 9 7 2 11 11 N 1.47480 * 87.93100 * 220.13467 * 10 9 7 12 12 C 1.46903 * 110.99888 * 138.70165 * 11 10 9 13 13 C 1.50699 * 109.47311 * 170.00049 * 12 11 10 14 14 C 1.35311 * 126.66410 * 90.28693 * 13 12 11 15 15 C 1.42295 * 103.92206 * 180.15628 * 14 13 12 16 16 C 1.48240 * 126.94105 * 179.89086 * 15 14 13 17 17 O 1.21413 * 120.00269 * 359.70509 * 16 15 14 18 18 O 1.34646 * 120.00003 * 179.42716 * 16 15 14 19 19 N 1.31010 * 106.11383 * 359.62195 * 15 14 13 20 20 O 1.20908 * 111.43402 * 0.24299 * 19 15 14 21 21 C 1.47477 * 87.83447 * 27.01033 * 11 10 9 22 22 H 0.96997 * 119.99519 * 0.02562 * 1 2 3 23 23 H 1.08997 * 113.25295 * 312.94855 * 9 7 2 24 24 H 1.09003 * 113.48106 * 105.36951 * 10 9 7 25 25 H 1.09006 * 113.53083 * 334.91010 * 10 9 7 26 26 H 1.09005 * 109.47234 * 50.00356 * 12 11 10 27 27 H 1.09005 * 109.47146 * 290.00188 * 12 11 10 28 28 H 1.08008 * 128.03555 * 0.02562 * 14 13 12 29 29 H 0.96694 * 117.00433 * 180.26888 * 18 16 15 30 30 H 1.08997 * 113.47798 * 87.75407 * 21 11 10 31 31 H 1.09001 * 113.47646 * 218.22109 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.1495 -3.7438 -0.0016 11 7 1.2055 -4.3598 -0.9526 12 6 1.9217 -5.0893 -2.0074 13 6 0.9401 -5.9026 -2.8112 14 6 0.2767 -5.5026 -3.9206 15 6 -0.5115 -6.6333 -4.2745 16 6 -1.4425 -6.7462 -5.4225 17 8 -1.5957 -5.8055 -6.1747 18 8 -2.1140 -7.8938 -5.6344 19 7 -0.2437 -7.5562 -3.3841 20 8 0.5584 -7.1641 -2.5688 21 6 0.8526 -2.9987 -1.3975 22 1 -0.4849 0.8401 -0.0004 23 1 0.4446 -2.5311 0.7310 24 1 2.1881 -4.2515 0.9622 25 1 3.1384 -3.5667 -0.4245 26 1 2.6583 -5.7530 -1.5544 27 1 2.4268 -4.3788 -2.6619 28 1 0.3310 -4.5465 -4.4200 29 1 -2.7066 -7.9212 -6.3979 30 1 1.4951 -2.6218 -2.1932 31 1 -0.2079 -2.8748 -1.6168 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064400.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:29 Heat of formation + Delta-G solvation = 12.383239 kcal Electronic energy + Delta-G solvation = -17758.980339 eV Core-core repulsion = 14624.403729 eV Total energy + Delta-G solvation = -3134.576610 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.13958 -40.26705 -39.12462 -36.43466 -34.21336 -33.45186 -32.34159 -29.16571 -26.05504 -25.78207 -24.90459 -23.18508 -22.53069 -20.77248 -18.79565 -18.17083 -17.83852 -17.56657 -16.61750 -16.56648 -15.78073 -15.03419 -14.67216 -14.38140 -14.14899 -13.62782 -13.43460 -13.31617 -12.05347 -11.94552 -11.91246 -11.66497 -11.31331 -11.18952 -11.01614 -10.74346 -10.65450 -10.43343 -10.01907 -9.73728 -9.18262 -9.05842 -8.51631 -8.24547 -6.12348 -4.18130 0.82094 1.56573 2.41810 2.71003 2.95548 3.26084 3.32258 3.33479 3.92275 4.34098 4.58073 4.81029 4.98175 5.03691 5.18435 5.32053 5.49743 5.59594 5.84052 5.90949 6.06055 6.16093 6.28179 6.52103 6.54899 6.94418 7.02203 7.48625 7.62862 7.75021 7.89545 7.95044 8.26766 8.85353 9.47898 10.97082 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.032757 B = 0.004469 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.564879 B = 6263.801630 C = 6827.799548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.043 3.957 10 C -0.002 4.002 11 N -0.482 5.482 12 C 0.091 3.909 13 C 0.010 3.990 14 C -0.179 4.179 15 C -0.021 4.021 16 C 0.574 3.426 17 O -0.494 6.494 18 O -0.500 6.500 19 N -0.314 5.314 20 O 0.137 5.863 21 C 0.001 3.999 22 H 0.263 0.737 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.183 0.817 29 H 0.418 0.582 30 H 0.059 0.941 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.087 -11.972 -8.001 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.024 3.976 10 C -0.130 4.130 11 N -0.206 5.206 12 C -0.039 4.039 13 C -0.053 4.053 14 C -0.203 4.203 15 C -0.177 4.177 16 C 0.415 3.585 17 O -0.379 6.379 18 O -0.311 6.311 19 N -0.011 5.011 20 O 0.056 5.944 21 C -0.128 4.128 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.200 0.800 29 H 0.278 0.722 30 H 0.077 0.923 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.131 -13.340 -7.577 15.342 hybrid contribution 0.676 2.109 -1.316 2.577 sum 0.807 -11.231 -8.893 14.348 Atomic orbital electron populations 1.69954 1.06037 1.27045 1.49095 1.25022 0.94814 0.99238 0.94430 0.86661 0.79644 0.83016 0.78712 1.20197 1.21225 1.20095 1.20969 0.92740 0.90112 1.52046 0.92306 1.20081 0.94322 0.90810 0.92392 1.24070 0.95727 0.97510 0.95720 1.68947 1.27371 1.14800 1.09447 1.21287 0.91806 0.96158 0.94626 1.24545 1.00004 0.84776 0.96014 1.22383 0.98744 1.00574 0.98576 1.22115 1.03473 0.93810 0.98256 1.19191 0.77318 0.80008 0.81978 1.90937 1.62659 1.39041 1.45261 1.84603 1.56372 1.37822 1.52342 1.74310 1.04535 1.22129 1.00170 1.84811 1.42178 1.26880 1.40488 1.24257 1.00750 0.85937 1.01850 0.92681 0.91588 0.91358 0.92195 0.88802 0.89885 0.79956 0.72228 0.92290 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.71 13.26 55.43 0.74 -23.97 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 20.27 29.54 -169.99 -5.02 15.24 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.52 -13.35 8.83 -34.44 -0.30 -13.65 16 8 H 0.06 1.46 7.81 -52.48 -0.41 1.05 16 9 C 0.04 1.01 3.76 -91.25 -0.34 0.66 16 10 C 0.00 -0.04 7.24 -7.55 -0.05 -0.09 16 11 N -0.48 -8.72 6.32 -246.11 -1.55 -10.27 16 12 C 0.09 1.28 5.37 -4.97 -0.03 1.25 16 13 C 0.01 0.14 7.06 -35.35 -0.25 -0.11 16 14 C -0.18 -2.59 10.92 -39.07 -0.43 -3.01 16 15 C -0.02 -0.31 7.24 -82.55 -0.60 -0.90 16 16 C 0.57 7.78 8.36 34.84 0.29 8.07 16 17 O -0.49 -7.59 17.74 -19.20 -0.34 -7.93 16 18 O -0.50 -5.17 13.44 -40.35 -0.54 -5.72 16 19 N -0.31 -4.81 12.12 33.29 0.40 -4.41 16 20 O 0.14 2.03 11.18 17.25 0.19 2.22 16 21 C 0.00 0.01 7.28 -7.56 -0.06 -0.04 16 22 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 23 H 0.07 1.72 8.11 -51.93 -0.42 1.30 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.06 1.05 7.87 -51.93 -0.41 0.64 16 26 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 27 H 0.08 1.09 7.30 -51.93 -0.38 0.71 16 28 H 0.18 2.43 8.06 -52.48 -0.42 2.01 16 29 H 0.42 1.96 9.11 45.56 0.42 2.37 16 30 H 0.06 1.20 7.38 -51.93 -0.38 0.82 16 31 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 284.75 15.07 4.29 4.29 Total: -1.00 -30.08 284.75 -6.11 -36.18 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -2.41 Total: 0.48 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.86 Total: -6.12 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.42 Total: -38.65 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.69 Total: -11.43 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.08 -6.11 -36.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064400.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.568 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds