Wall clock time and date at job start Sun Mar 29 2020 23:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31383 * 1 3 3 Si 1.86797 * 119.99901 * 2 1 4 4 H 1.48498 * 109.46909 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47238 * 300.00324 * 3 2 1 6 6 H 1.48503 * 109.46765 * 60.00692 * 3 2 1 7 7 C 1.39020 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99792 * 179.97438 * 7 2 1 9 9 N 1.36901 * 120.00395 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00038 * 179.97438 * 9 7 2 11 11 O 1.21628 * 119.99851 * 359.97438 * 10 9 7 12 12 C 1.47414 * 120.00095 * 179.97438 * 10 9 7 13 13 C 1.40054 * 120.60070 * 0.25963 * 12 10 9 14 14 C 1.38323 * 118.34189 * 180.26576 * 13 12 10 15 15 C 1.38372 * 119.46624 * 359.45517 * 14 13 12 16 16 N 1.31903 * 121.19432 * 0.30190 * 15 14 13 17 17 C 1.32217 * 121.80844 * 359.97438 * 16 15 14 18 18 O 1.35427 * 119.80630 * 180.02562 * 17 16 15 19 19 C 1.42903 * 116.99968 * 0.02562 * 18 17 16 20 20 C 1.52995 * 109.47478 * 179.97438 * 19 18 17 21 21 O 1.42902 * 109.47063 * 64.99683 * 20 19 18 22 22 H 0.97000 * 120.00197 * 359.97438 * 1 2 3 23 23 H 0.96997 * 120.00033 * 359.97438 * 9 7 2 24 24 H 1.08001 * 120.82898 * 359.97438 * 13 12 10 25 25 H 1.08002 * 120.27062 * 179.73794 * 14 13 12 26 26 H 1.07994 * 119.40467 * 180.28271 * 15 14 13 27 27 H 1.09000 * 109.46993 * 299.99660 * 19 18 17 28 28 H 1.09007 * 109.47224 * 59.99481 * 19 18 17 29 29 H 1.08996 * 109.47265 * 184.99780 * 20 19 18 30 30 H 1.09004 * 109.47182 * 304.99762 * 20 19 18 31 31 H 0.96696 * 113.99797 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.7078 1.3464 -0.0006 5 1 1.8890 2.3965 -1.2124 6 1 1.8891 2.3963 1.2126 7 6 2.0088 -1.2040 -0.0005 8 1 3.0889 -1.2040 -0.0010 9 7 1.3243 -2.3896 -0.0016 10 6 1.9982 -3.5568 -0.0026 11 8 3.2145 -3.5568 -0.0031 12 6 1.2612 -4.8335 -0.0032 13 6 -0.1393 -4.8482 -0.0081 14 6 -0.7832 -6.0724 -0.0028 15 6 -0.0338 -7.2356 -0.0043 16 7 1.2848 -7.1989 -0.0048 17 6 1.9501 -6.0563 -0.0044 18 8 3.3043 -6.0658 -0.0055 19 6 3.9440 -7.3437 -0.0076 20 6 5.4622 -7.1540 -0.0092 21 8 5.8657 -6.5312 1.2121 22 1 -0.4850 0.8400 0.0004 23 1 0.3544 -2.3896 -0.0016 24 1 -0.7025 -3.9266 -0.0112 25 1 -1.8621 -6.1200 -0.0021 26 1 -0.5375 -8.1909 -0.0048 27 1 3.6479 -7.8997 0.8820 28 1 3.6465 -7.8975 -0.8980 29 1 5.9495 -8.1247 -0.1003 30 1 5.7487 -6.5232 -0.8507 31 1 6.8182 -6.3795 1.2801 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611113882.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:02 Heat of formation + Delta-G solvation = -83.768999 kcal Electronic energy + Delta-G solvation = -18149.251094 eV Core-core repulsion = 15010.505010 eV Total energy + Delta-G solvation = -3138.746084 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.30352 -38.00999 -37.54769 -36.26079 -33.96187 -32.32394 -31.03119 -30.72797 -29.03609 -25.37656 -23.94826 -22.97145 -21.83125 -19.68645 -18.44057 -17.87686 -17.47395 -16.49817 -16.21925 -15.53636 -14.82752 -14.65598 -14.25438 -14.04747 -13.82393 -13.49448 -13.34687 -12.73510 -12.56668 -12.31786 -11.85359 -11.59929 -11.15733 -11.14445 -10.74234 -10.35955 -10.29109 -9.97133 -9.67463 -9.47920 -9.40642 -8.32933 -8.08303 -7.98300 -6.51279 -3.82955 1.20747 1.62561 3.15699 3.24532 3.32437 3.38267 3.77429 4.12068 4.32823 4.50373 4.51582 4.96861 5.10937 5.17271 5.26616 5.31120 5.33588 5.34046 5.58368 5.67942 5.75077 5.89038 6.14293 6.35459 6.54199 6.73208 7.48155 7.67094 7.76379 7.98188 8.16298 8.57351 9.12620 9.47793 10.05729 10.66330 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.020759 B = 0.006566 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.459750 B = 4263.404426 C = 5538.355093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.020 3.980 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.288 4.288 8 H 0.108 0.892 9 N -0.550 5.550 10 C 0.476 3.524 11 O -0.569 6.569 12 C -0.166 4.166 13 C -0.032 4.032 14 C -0.216 4.216 15 C 0.132 3.868 16 N -0.551 5.551 17 C 0.354 3.646 18 O -0.253 6.253 19 C 0.065 3.935 20 C 0.079 3.921 21 O -0.561 6.561 22 H 0.274 0.726 23 H 0.391 0.609 24 H 0.144 0.856 25 H 0.135 0.865 26 H 0.155 0.845 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.024 -12.966 -0.884 13.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.182 4.182 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.417 4.417 8 H 0.126 0.874 9 N -0.186 5.186 10 C 0.263 3.737 11 O -0.453 6.453 12 C -0.172 4.172 13 C -0.059 4.059 14 C -0.237 4.237 15 C -0.024 4.024 16 N -0.276 5.276 17 C 0.173 3.827 18 O -0.157 6.157 19 C -0.011 4.011 20 C 0.001 3.999 21 O -0.366 6.366 22 H 0.084 0.916 23 H 0.225 0.775 24 H 0.162 0.838 25 H 0.153 0.847 26 H 0.172 0.828 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.786 -13.341 -0.772 13.482 hybrid contribution -0.326 1.313 -0.156 1.362 sum 1.460 -12.028 -0.927 12.151 Atomic orbital electron populations 1.69600 1.06088 1.28460 1.49300 1.25350 0.95701 0.99979 0.97177 0.85730 0.79803 0.80666 0.77796 1.19017 1.20622 1.20592 1.19881 0.93749 0.82071 1.46035 0.87400 1.41852 1.09237 1.04598 1.62927 1.17339 0.87576 0.82687 0.86101 1.90684 1.12572 1.86479 1.55615 1.20513 0.93524 0.94140 1.09049 1.21738 0.92533 0.99042 0.92587 1.21815 1.01278 0.92976 1.07620 1.22358 0.88017 0.98358 0.93685 1.67345 1.11217 1.28155 1.20875 1.19838 0.84480 0.88505 0.89874 1.86668 1.13468 1.29660 1.85917 1.22656 0.91024 0.85052 1.02393 1.22194 0.93146 0.96664 0.87877 1.86629 1.28464 1.83146 1.38328 0.91627 0.77451 0.83835 0.84666 0.82784 0.91331 0.90664 0.92029 0.92433 0.77689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.01 13.05 55.50 0.72 -23.28 16 2 C 0.02 0.54 5.50 -17.45 -0.10 0.45 16 3 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.29 -8.13 9.68 -15.00 -0.15 -8.27 16 8 H 0.11 3.19 7.15 -52.49 -0.38 2.82 16 9 N -0.55 -14.51 5.23 -11.96 -0.06 -14.57 16 10 C 0.48 12.43 7.72 -12.52 -0.10 12.34 16 11 O -0.57 -16.78 14.77 -16.52 -0.24 -17.02 16 12 C -0.17 -3.58 5.90 -104.69 -0.62 -4.20 16 13 C -0.03 -0.57 9.64 -38.87 -0.37 -0.94 16 14 C -0.22 -3.03 10.09 -39.50 -0.40 -3.43 16 15 C 0.13 1.86 11.17 -17.47 -0.20 1.67 16 16 N -0.55 -9.56 9.21 -12.96 -0.12 -9.68 16 17 C 0.35 7.31 7.51 -16.59 -0.12 7.18 16 18 O -0.25 -5.42 8.18 -43.73 -0.36 -5.78 16 19 C 0.06 1.03 5.69 37.15 0.21 1.24 16 20 C 0.08 1.06 7.43 37.15 0.28 1.33 16 21 O -0.56 -8.64 13.62 -40.08 -0.55 -9.19 16 22 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 23 H 0.39 9.64 5.99 -40.82 -0.24 9.40 16 24 H 0.14 2.37 6.51 -52.49 -0.34 2.03 16 25 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 27 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 28 H 0.08 1.04 8.11 -51.92 -0.42 0.62 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.38 3.73 9.12 45.56 0.42 4.14 16 LS Contribution 280.96 15.07 4.23 4.23 Total: -1.00 -35.13 280.96 -5.17 -40.30 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -2.21 Total: 11.74 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -1.56 Total: 7.37 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.54 Total: -47.53 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -1.15 Total: -31.99 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -35.13 -5.17 -40.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113882.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.468 kcal (2) G-P(sol) polarization free energy of solvation -35.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds