Wall clock time and date at job start Sun Mar 29 2020 23:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00382 * 2 1 4 4 H 1.48497 * 109.47388 * 240.00221 * 3 2 1 5 5 H 1.48503 * 109.46960 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47377 * 119.99654 * 3 2 1 7 7 C 1.37884 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99840 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.64546 * 298.31720 * 9 7 2 11 11 C 1.55159 * 110.87006 * 175.06535 * 9 7 2 12 12 C 1.54909 * 101.57990 * 206.06403 * 11 9 7 13 13 N 1.47743 * 104.83995 * 37.09908 * 12 11 9 14 14 C 1.34780 * 125.81887 * 155.82587 * 13 12 11 15 15 O 1.21614 * 119.99642 * 179.90855 * 14 13 12 16 16 C 1.47411 * 120.00329 * 359.90823 * 14 13 12 17 17 C 1.36091 * 126.44981 * 179.97438 * 16 14 13 18 18 O 1.34261 * 106.95290 * 179.97438 * 17 16 14 19 19 C 1.34050 * 108.22341 * 0.02562 * 18 17 16 20 20 N 1.29940 * 109.24456 * 359.72187 * 19 18 17 21 21 C 1.47020 * 108.53125 * 335.74644 * 13 12 11 22 22 H 0.96996 * 119.99953 * 0.02562 * 1 2 3 23 23 H 0.96701 * 113.99408 * 61.68794 * 10 9 7 24 24 H 1.08994 * 111.00854 * 324.14450 * 11 9 7 25 25 H 1.09001 * 110.99961 * 87.95577 * 11 9 7 26 26 H 1.09003 * 110.36363 * 155.85234 * 12 11 9 27 27 H 1.08996 * 110.37070 * 278.06073 * 12 11 9 28 28 H 1.07997 * 126.52911 * 359.97438 * 17 16 14 29 29 H 1.07998 * 125.37958 * 180.02562 * 19 18 17 30 30 H 1.09002 * 109.88367 * 241.68734 * 21 13 12 31 31 H 1.09000 * 109.88319 * 120.67352 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4502 -2.6186 1.1770 11 6 2.2254 -3.7001 -0.1259 12 6 1.3148 -4.7731 -0.7733 13 7 0.4602 -4.0244 -1.7177 14 6 -0.1465 -4.5350 -2.8075 15 8 -0.8307 -3.8195 -3.5138 16 6 0.0193 -5.9608 -3.1433 17 6 -0.5303 -6.6104 -4.2054 18 8 -0.1253 -7.8886 -4.1347 19 6 0.6553 -8.0218 -3.0531 20 7 0.7551 -6.8737 -2.4529 21 6 0.3803 -2.6268 -1.2683 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2279 -1.9344 1.2625 24 1 3.0650 -3.4558 -0.7766 25 1 2.5750 -4.0235 0.8546 26 1 1.9161 -5.5080 -1.3087 27 1 0.7064 -5.2632 -0.0132 28 1 -1.1704 -6.1799 -4.9613 29 1 1.1305 -8.9376 -2.7339 30 1 -0.6534 -2.3708 -1.0354 31 1 0.7596 -1.9648 -2.0467 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639943399.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:09 Heat of formation + Delta-G solvation = -77.384231 kcal Electronic energy + Delta-G solvation = -18673.187074 eV Core-core repulsion = 15534.717854 eV Total energy + Delta-G solvation = -3138.469220 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.35885 -40.92560 -38.97427 -36.24988 -35.65458 -34.25144 -31.92527 -31.25983 -29.62853 -27.44087 -25.21743 -23.63305 -23.51112 -21.47896 -20.89511 -19.12977 -18.79308 -17.72337 -17.67644 -17.32849 -16.57335 -16.49803 -16.11418 -15.61133 -14.91773 -14.84795 -14.73652 -14.48023 -13.78137 -13.53548 -13.34850 -12.85021 -12.60501 -12.43121 -12.34627 -12.31877 -12.14002 -11.68072 -11.27940 -11.11357 -10.65079 -10.32176 -10.23732 -9.60035 -8.27326 -6.43805 0.11429 1.12322 1.42785 1.43192 1.51668 1.72940 2.05389 2.22426 2.37976 2.98796 3.09243 3.68161 3.82893 3.89558 4.08406 4.23827 4.39795 4.53915 4.61647 4.67656 4.78526 4.98791 5.10410 5.16593 5.32456 5.35523 5.48044 5.71847 6.04119 6.45085 6.56954 6.65136 7.01298 7.25424 7.33232 8.79018 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.041344 B = 0.005739 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.082932 B = 4877.877925 C = 5167.948259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.559 4.559 8 H 0.068 0.932 9 C 0.234 3.766 10 O -0.587 6.587 11 C -0.114 4.114 12 C 0.120 3.880 13 N -0.602 5.602 14 C 0.592 3.408 15 O -0.589 6.589 16 C -0.099 4.099 17 C 0.034 3.966 18 O -0.193 6.193 19 C 0.202 3.798 20 N -0.498 5.498 21 C 0.122 3.878 22 H 0.271 0.729 23 H 0.375 0.625 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.062 0.938 28 H 0.250 0.750 29 H 0.308 0.692 30 H 0.035 0.965 31 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 -15.727 -5.641 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.597 4.597 8 H 0.086 0.914 9 C 0.193 3.807 10 O -0.395 6.395 11 C -0.152 4.152 12 C -0.002 4.002 13 N -0.333 5.333 14 C 0.382 3.618 15 O -0.471 6.471 16 C -0.217 4.217 17 C -0.041 4.041 18 O -0.079 6.079 19 C -0.026 4.026 20 N -0.227 5.227 21 C -0.001 4.001 22 H 0.080 0.920 23 H 0.224 0.776 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.128 0.872 27 H 0.080 0.920 28 H 0.266 0.734 29 H 0.323 0.677 30 H 0.053 0.947 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.417 -15.678 -5.398 16.756 hybrid contribution -0.698 1.782 -0.554 1.993 sum 1.719 -13.895 -5.952 15.214 Atomic orbital electron populations 1.69803 1.07166 1.28629 1.49961 1.25844 0.95832 1.02893 0.92966 0.85484 0.78325 0.78175 0.78920 1.19744 1.20843 1.19228 1.21795 0.93953 0.91267 1.52717 0.91420 1.19719 0.87014 0.93555 0.80369 1.86108 1.51736 1.56271 1.45387 1.22793 0.97040 0.94002 1.01390 1.22525 0.92128 0.94266 0.91256 1.48735 1.47825 1.11969 1.24746 1.17084 0.79148 0.85757 0.79833 1.90750 1.42814 1.61360 1.52208 1.21414 1.06435 0.94561 0.99244 1.25567 0.98621 0.80566 0.99358 1.84486 1.52005 1.28042 1.43335 1.29370 0.91740 0.99738 0.81756 1.70801 1.20924 1.00863 1.30090 1.22580 0.99675 0.79600 0.98276 0.91994 0.77569 0.89971 0.89165 0.87247 0.92017 0.73419 0.67724 0.94670 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.79 10.96 21.45 0.24 -50.55 16 2 C 0.03 1.37 5.28 84.66 0.45 1.81 16 3 Si 0.97 42.59 29.54 68.60 2.03 44.61 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.56 -30.10 8.13 25.60 0.21 -29.89 16 8 H 0.07 3.53 7.78 -2.91 -0.02 3.51 16 9 C 0.23 11.81 0.85 -10.35 -0.01 11.80 16 10 O -0.59 -30.79 13.07 -148.98 -1.95 -32.74 16 11 C -0.11 -4.71 6.23 31.99 0.20 -4.52 16 12 C 0.12 4.57 6.16 86.79 0.53 5.10 16 13 N -0.60 -26.96 3.34 -814.85 -2.72 -29.68 16 14 C 0.59 25.25 7.85 86.66 0.68 25.93 16 15 O -0.59 -28.54 17.22 -4.07 -0.07 -28.61 16 16 C -0.10 -3.12 6.82 40.40 0.28 -2.85 16 17 C 0.03 0.77 11.95 67.32 0.80 1.57 16 18 O -0.19 -3.34 10.73 0.34 0.00 -3.34 16 19 C 0.20 3.08 13.19 130.52 1.72 4.80 16 20 N -0.50 -13.01 8.45 -305.15 -2.58 -15.59 16 21 C 0.12 6.33 5.23 86.73 0.45 6.78 16 22 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 23 H 0.38 20.33 7.45 -74.06 -0.55 19.78 16 24 H 0.08 3.24 8.04 -2.39 -0.02 3.22 16 25 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 26 H 0.11 3.65 6.16 -2.39 -0.01 3.63 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.25 4.38 8.06 -2.91 -0.02 4.36 16 29 H 0.31 0.63 8.06 -2.91 -0.02 0.60 16 30 H 0.03 2.01 7.91 -2.39 -0.02 1.99 16 31 H 0.04 2.14 7.81 -2.39 -0.02 2.12 16 Total: -1.00 -71.04 272.17 0.88 -70.16 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.62 Total: 25.18 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 5.32 Total: 20.56 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -5.06 Total: -95.82 kcal Atomic # 8 Polarization: -62.67 SS G_CDS: -2.01 Total: -64.69 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -71.04 0.88 -70.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639943399.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.227 kcal (2) G-P(sol) polarization free energy of solvation -71.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds