Wall clock time and date at job start Sun Mar 29 2020 23:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00031 * 2 1 4 4 H 1.48500 * 109.46979 * 269.99552 * 3 2 1 5 5 H 1.48494 * 109.47131 * 29.99531 * 3 2 1 6 6 H 1.48503 * 109.46942 * 149.99861 * 3 2 1 7 7 C 1.37881 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99985 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99546 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99932 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00082 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99532 * 179.97438 * 11 10 9 14 14 N 1.46506 * 109.46880 * 180.02562 * 13 11 10 15 15 C 1.39841 * 120.00151 * 180.02562 * 14 13 11 16 16 C 1.38835 * 120.07820 * 359.97438 * 15 14 13 17 17 C 1.38155 * 119.94608 * 180.02562 * 16 15 14 18 18 C 1.38265 * 120.11435 * 0.02562 * 17 16 15 19 19 C 1.38294 * 120.16273 * 0.02562 * 18 17 16 20 20 C 1.38277 * 120.04681 * 359.97438 * 19 18 17 21 21 F 1.35104 * 120.05636 * 179.97438 * 20 19 18 22 22 H 0.96998 * 119.99593 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47298 * 60.00091 * 9 7 2 24 24 H 1.09001 * 109.47235 * 300.00295 * 9 7 2 25 25 H 0.97000 * 119.99421 * 359.97438 * 10 9 7 26 26 H 1.08997 * 109.47113 * 60.00164 * 13 11 10 27 27 H 1.08996 * 109.47669 * 299.99737 * 13 11 10 28 28 H 0.97003 * 119.99938 * 359.97438 * 14 13 11 29 29 H 1.07997 * 120.02768 * 0.29775 * 16 15 14 30 30 H 1.07997 * 119.93793 * 179.97438 * 17 16 15 31 31 H 1.07997 * 119.92354 * 179.97438 * 18 17 16 32 32 H 1.07996 * 119.97541 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9999 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1130 -1.8999 0.0005 13 6 5.8272 -4.2425 0.0014 14 7 7.2922 -4.2425 0.0018 15 6 7.9914 -5.4536 0.0018 16 6 7.2989 -6.6569 0.0018 17 6 7.9924 -7.8517 0.0023 18 6 9.3750 -7.8513 0.0033 19 6 10.0696 -6.6554 0.0043 20 6 9.3822 -5.4556 0.0038 21 9 10.0605 -4.2872 0.0053 22 1 -0.4849 0.8401 -0.0004 23 1 3.8745 -0.6801 0.8911 24 1 3.8752 -0.6804 -0.8888 25 1 3.3695 -3.3126 0.0010 26 1 5.4637 -4.7566 -0.8884 27 1 5.4640 -4.7560 0.8916 28 1 7.7773 -3.4025 0.0014 29 1 6.2189 -6.6589 -0.0029 30 1 7.4536 -8.7877 0.0027 31 1 9.9141 -8.7872 0.0040 32 1 11.1495 -6.6586 0.0046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020052460.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:49 Heat of formation + Delta-G solvation = -57.741196 kcal Electronic energy + Delta-G solvation = -17299.306530 eV Core-core repulsion = 14174.061886 eV Total energy + Delta-G solvation = -3125.244644 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.79480 -39.67522 -38.83927 -35.49271 -34.42618 -32.48007 -30.65659 -30.25645 -28.31254 -26.25687 -23.02369 -22.28307 -21.63135 -20.10725 -18.44093 -17.36428 -16.82068 -16.57759 -15.81398 -15.79200 -15.40721 -15.31702 -14.71461 -14.35083 -14.16688 -13.61780 -13.59973 -13.12445 -12.82560 -12.53270 -12.40765 -12.01687 -11.92578 -11.26157 -11.10343 -10.84201 -10.37795 -10.04671 -9.59954 -9.50195 -8.97339 -8.86402 -8.34212 -7.55189 -6.28366 -4.31625 1.08466 1.31294 2.95184 3.06356 3.22111 3.29375 3.36555 3.56658 3.88217 4.21088 4.27153 4.63277 4.80009 5.04240 5.06721 5.15034 5.18857 5.23760 5.28897 5.49591 5.85928 5.94738 6.13717 6.34270 6.57076 6.68527 6.95637 7.01175 7.08534 7.27211 7.59629 7.98916 8.36263 8.60416 8.73735 9.30782 10.83406 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.048136 B = 0.003794 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.542813 B = 7377.793578 C = 7938.890907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.698 5.698 11 C 0.495 3.505 12 O -0.553 6.553 13 C 0.104 3.896 14 N -0.728 5.728 15 C 0.197 3.803 16 C -0.180 4.180 17 C -0.078 4.078 18 C -0.160 4.160 19 C -0.105 4.105 20 C 0.016 3.984 21 F -0.143 7.143 22 H 0.269 0.731 23 H 0.027 0.973 24 H 0.023 0.977 25 H 0.400 0.600 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.415 0.585 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.175 -15.724 0.027 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.098 3.902 10 N -0.346 5.346 11 C 0.279 3.721 12 O -0.433 6.433 13 C -0.024 4.024 14 N -0.360 5.360 15 C 0.091 3.909 16 C -0.203 4.203 17 C -0.097 4.097 18 C -0.180 4.180 19 C -0.125 4.125 20 C -0.008 4.008 21 F -0.122 7.122 22 H 0.078 0.922 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.234 0.766 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.255 0.745 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.328 -14.841 0.031 21.335 hybrid contribution 0.211 1.081 -0.026 1.102 sum 15.539 -13.760 0.005 20.755 Atomic orbital electron populations 1.69875 1.06213 1.27546 1.49084 1.24794 0.94804 0.99197 0.93758 0.86814 0.80543 0.83217 0.79102 1.19794 1.20793 1.18547 1.21060 0.88333 0.95326 1.53744 0.90126 1.19554 0.95433 0.78201 0.96999 1.46119 1.05250 1.11512 1.71730 1.20351 0.83715 0.90345 0.77724 1.90663 1.55423 1.45896 1.51286 1.21131 0.81718 0.96091 1.03487 1.44397 1.04653 1.06055 1.80904 1.17871 0.89440 0.87535 0.96028 1.20620 1.00132 0.90262 1.09313 1.20954 0.94135 0.97466 0.97145 1.20737 0.94174 0.97159 1.05964 1.20918 1.00353 0.90830 1.00362 1.17183 0.87973 0.82094 1.13557 1.91461 1.79739 1.46200 1.94809 0.92152 0.95491 0.95954 0.76646 0.89143 0.89140 0.74547 0.85029 0.85520 0.85608 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.96 55.43 0.77 -25.21 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.55 -14.59 9.83 -34.44 -0.34 -14.93 16 8 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 9 C 0.22 5.23 4.50 -5.19 -0.02 5.21 16 10 N -0.70 -13.20 5.55 -61.47 -0.34 -13.54 16 11 C 0.49 8.80 7.90 -10.99 -0.09 8.71 16 12 O -0.55 -12.01 15.67 5.56 0.09 -11.93 16 13 C 0.10 1.32 5.40 -5.19 -0.03 1.29 16 14 N -0.73 -10.11 5.71 -59.74 -0.34 -10.45 16 15 C 0.20 2.47 6.66 -83.67 -0.56 1.92 16 16 C -0.18 -1.84 9.31 -39.39 -0.37 -2.20 16 17 C -0.08 -0.67 10.04 -39.60 -0.40 -1.07 16 18 C -0.16 -1.38 10.04 -39.55 -0.40 -1.77 16 19 C -0.11 -1.06 10.02 -39.55 -0.40 -1.46 16 20 C 0.02 0.20 7.31 -39.26 -0.29 -0.09 16 21 F -0.14 -2.03 16.64 2.25 0.04 -1.99 16 22 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 24 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 25 H 0.40 6.43 8.32 -40.82 -0.34 6.09 16 26 H 0.09 0.96 7.95 -51.93 -0.41 0.54 16 27 H 0.09 0.96 7.96 -51.93 -0.41 0.54 16 28 H 0.42 6.55 6.93 -40.82 -0.28 6.26 16 29 H 0.13 1.12 6.74 -52.49 -0.35 0.77 16 30 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 31 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 285.20 15.07 4.30 4.30 Total: -1.00 -31.56 285.20 -6.55 -38.11 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -3.42 Total: 6.60 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.98 Total: -2.30 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.09 Total: -49.21 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.56 -6.55 -38.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020052460.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.635 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds