Wall clock time and date at job start Sun Mar 29 2020 23:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38344 * 120.04914 * 2 1 4 4 F 1.35104 * 119.98866 * 359.97438 * 3 2 1 5 5 C 1.38500 * 120.02739 * 180.24871 * 3 2 1 6 6 C 1.38274 * 120.11569 * 359.45443 * 5 3 2 7 7 C 1.38093 * 120.10049 * 0.54934 * 6 5 3 8 8 C 1.38848 * 120.05273 * 179.97438 * 2 1 3 9 9 N 1.39669 * 120.05701 * 0.02562 * 8 2 1 10 10 C 1.46501 * 119.99669 * 179.97438 * 9 8 2 11 11 C 1.50705 * 109.46989 * 179.97438 * 10 9 8 12 12 O 1.21290 * 120.00171 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99860 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99532 * 180.02562 * 13 11 10 15 15 H 1.08001 * 120.00441 * 0.02562 * 14 13 11 16 16 C 1.38958 * 119.99659 * 179.97438 * 14 13 11 17 17 N 1.31412 * 119.99747 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99953 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46975 * 60.00166 * 18 16 14 20 20 H 1.48492 * 109.47041 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47238 * 300.00341 * 18 16 14 22 22 H 1.09004 * 109.47160 * 89.99736 * 1 2 3 23 23 H 1.08998 * 109.46696 * 209.99744 * 1 2 3 24 24 H 1.08996 * 109.46960 * 329.99617 * 1 2 3 25 25 H 1.07991 * 119.94170 * 179.70324 * 5 3 2 26 26 H 1.08002 * 119.94913 * 180.27031 * 6 5 3 27 27 H 1.08008 * 120.00810 * 179.70056 * 7 6 5 28 28 H 0.96996 * 120.00188 * 359.97438 * 9 8 2 29 29 H 1.08994 * 109.47614 * 299.99405 * 10 9 8 30 30 H 1.08998 * 109.47410 * 59.99913 * 10 9 8 31 31 H 0.96998 * 120.00279 * 0.02562 * 13 11 10 32 32 H 0.97000 * 119.99800 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1975 0.0000 4 9 1.5250 2.3680 -0.0005 5 6 3.5847 1.1970 -0.0052 6 6 4.2781 0.0007 0.0010 7 6 3.5917 -1.1976 0.0009 8 6 2.2023 -1.2018 0.0005 9 7 1.5063 -2.4127 0.0005 10 6 2.2413 -3.6800 0.0005 11 6 1.2642 -4.8274 0.0012 12 8 0.0713 -4.6081 0.0021 13 7 1.7160 -6.0972 0.0018 14 6 0.8271 -7.1410 0.0019 15 1 -0.2352 -6.9457 0.0010 16 6 1.2928 -8.4502 0.0020 17 7 2.5853 -8.6877 0.0025 18 14 0.0817 -9.8723 0.0028 19 1 -0.7726 -9.7956 -1.2095 20 1 0.8267 -11.1569 0.0034 21 1 -0.7718 -9.7950 1.2155 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 4.1241 2.1326 -0.0100 26 1 5.3581 0.0034 0.0013 27 1 4.1348 -2.1312 0.0009 28 1 0.5363 -2.4146 0.0005 29 1 2.8680 -3.7366 -0.8894 30 1 2.8681 -3.7366 0.8905 31 1 2.6700 -6.2726 0.0022 32 1 2.9104 -9.6016 0.0030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043321158.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:50 Heat of formation + Delta-G solvation = -81.966290 kcal Electronic energy + Delta-G solvation = -17540.431444 eV Core-core repulsion = 14414.136320 eV Total energy + Delta-G solvation = -3126.295123 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.84853 -40.77645 -39.88047 -36.45544 -35.75344 -33.66821 -33.31468 -30.62375 -28.61210 -27.61706 -26.24012 -22.90311 -22.48118 -21.16635 -20.04404 -19.02288 -18.03742 -17.42377 -16.70363 -16.65524 -16.44301 -16.29853 -16.05005 -15.83053 -15.28416 -14.65426 -14.29781 -14.16222 -13.93306 -13.79221 -13.53810 -13.31783 -12.98284 -12.77777 -12.48464 -12.34695 -12.14063 -12.01076 -11.57891 -11.05066 -10.55144 -10.10074 -9.54625 -8.52050 -8.41925 -6.01707 0.29810 0.55618 1.37241 1.42115 1.52244 1.91917 2.16339 2.37240 2.77510 3.15233 3.15522 3.45716 3.87042 3.96983 4.14925 4.17916 4.41145 4.48588 4.52258 4.57072 4.66167 4.69333 4.95096 5.20761 5.29873 5.34164 5.36984 5.54656 5.84524 5.95181 6.29051 6.50247 6.68278 7.04069 7.44544 7.96898 8.64439 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.050495 B = 0.003974 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.379976 B = 7043.380084 C = 7577.313591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.219 4.219 3 C 0.124 3.876 4 F -0.146 7.146 5 C -0.216 4.216 6 C -0.040 4.040 7 C -0.214 4.214 8 C 0.233 3.767 9 N -0.731 5.731 10 C 0.126 3.874 11 C 0.428 3.572 12 O -0.632 6.632 13 N -0.558 5.558 14 C -0.340 4.340 15 H 0.081 0.919 16 C -0.006 4.006 17 N -0.913 5.913 18 Si 0.993 3.007 19 H -0.272 1.272 20 H -0.269 1.269 21 H -0.272 1.272 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.150 0.850 26 H 0.164 0.836 27 H 0.143 0.857 28 H 0.404 0.596 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.401 0.599 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.703 14.299 -0.027 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.224 4.224 3 C 0.105 3.895 4 F -0.125 7.125 5 C -0.236 4.236 6 C -0.059 4.059 7 C -0.237 4.237 8 C 0.128 3.872 9 N -0.362 5.362 10 C -0.001 4.001 11 C 0.215 3.785 12 O -0.520 6.520 13 N -0.194 5.194 14 C -0.470 4.470 15 H 0.099 0.901 16 C -0.207 4.207 17 N -0.553 5.553 18 Si 0.816 3.184 19 H -0.197 1.197 20 H -0.194 1.194 21 H -0.197 1.197 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.168 0.832 26 H 0.182 0.818 27 H 0.160 0.840 28 H 0.243 0.757 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.235 0.765 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.117 14.078 -0.026 14.979 hybrid contribution -0.763 -0.747 0.007 1.068 sum 4.354 13.331 -0.019 14.024 Atomic orbital electron populations 1.20497 0.90378 1.02719 1.02492 1.19398 0.97133 0.91148 1.14752 1.17419 0.90612 0.79774 1.01721 1.91434 1.80965 1.46176 1.93911 1.21126 0.91199 1.00912 1.10404 1.21063 1.01248 0.89911 0.93652 1.21041 0.91242 1.00545 1.10860 1.17588 0.91987 0.84548 0.93083 1.44615 1.09206 1.01669 1.80668 1.20894 0.93242 0.81726 1.04289 1.20669 0.89639 0.84853 0.83332 1.90482 1.18668 1.84813 1.58056 1.41811 1.09829 1.04217 1.63533 1.19654 0.91040 0.85616 1.50659 0.90092 1.26041 0.98389 1.00547 0.95750 1.69649 1.13491 1.23005 1.49173 0.84989 0.77691 0.76715 0.78983 1.19687 1.19385 1.19701 0.91195 0.92216 0.90755 0.83226 0.81833 0.83954 0.75732 0.88086 0.88120 0.76464 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.74 9.40 71.24 0.67 -2.07 16 2 C -0.22 -6.10 5.90 -19.69 -0.12 -6.21 16 3 C 0.12 3.20 7.24 22.36 0.16 3.37 16 4 F -0.15 -3.82 16.48 44.97 0.74 -3.08 16 5 C -0.22 -4.50 10.02 22.34 0.22 -4.28 16 6 C -0.04 -0.76 10.04 22.24 0.22 -0.54 16 7 C -0.21 -4.96 9.31 22.40 0.21 -4.75 16 8 C 0.23 6.61 6.63 38.21 0.25 6.86 16 9 N -0.73 -23.53 5.60 -343.16 -1.92 -25.45 16 10 C 0.13 4.08 5.39 85.63 0.46 4.54 16 11 C 0.43 19.26 7.85 87.66 0.69 19.95 16 12 O -0.63 -33.29 15.24 -3.06 -0.05 -33.34 16 13 N -0.56 -27.13 5.29 -306.97 -1.62 -28.75 16 14 C -0.34 -18.57 9.68 84.04 0.81 -17.75 16 15 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 16 C -0.01 -0.32 5.50 84.93 0.47 0.15 16 17 N -0.91 -47.17 13.05 21.67 0.28 -46.89 16 18 Si 0.99 41.32 29.55 68.60 2.03 43.35 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 23 H 0.06 1.65 6.55 -2.39 -0.02 1.64 16 24 H 0.07 1.79 7.64 -2.39 -0.02 1.77 16 25 H 0.15 2.38 8.06 -2.92 -0.02 2.36 16 26 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 27 H 0.14 2.85 6.73 -2.91 -0.02 2.83 16 28 H 0.40 14.42 5.43 -92.71 -0.50 13.92 16 29 H 0.10 2.82 7.95 -2.39 -0.02 2.80 16 30 H 0.10 2.81 7.95 -2.39 -0.02 2.79 16 31 H 0.40 18.21 7.90 -92.71 -0.73 17.48 16 32 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -62.48 283.36 3.45 -59.04 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -0.06 Total: 35.86 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 4.05 Total: -0.74 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -3.26 Total: -101.09 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.05 Total: -33.34 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.74 Total: -3.08 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -62.48 3.45 -59.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043321158.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.931 kcal (2) G-P(sol) polarization free energy of solvation -62.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds