Wall clock time and date at job start Sun Mar 29 2020 23:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35894 * 117.00422 * 2 1 4 4 C 1.38835 * 120.01414 * 0.02562 * 3 2 1 5 5 C 1.38186 * 120.10637 * 179.97438 * 4 3 2 6 6 C 1.38140 * 120.13018 * 359.72452 * 5 4 3 7 7 C 1.38985 * 120.02982 * 0.55018 * 6 5 4 8 8 S 1.76206 * 120.05152 * 179.71842 * 7 6 5 9 9 C 1.81401 * 102.99841 * 359.73204 * 8 7 6 10 10 C 1.52997 * 109.47149 * 179.97438 * 9 8 7 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00057 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00356 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99989 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47114 * 60.00582 * 16 14 12 18 18 H 1.48503 * 109.47134 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47402 * 300.00322 * 16 14 12 20 20 C 1.38543 * 120.01815 * 179.97438 * 3 2 1 21 21 H 1.08994 * 109.47147 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47006 * 299.99826 * 1 2 3 23 23 H 1.09000 * 109.46526 * 59.99549 * 1 2 3 24 24 H 1.08004 * 119.94801 * 359.95296 * 4 3 2 25 25 H 1.08002 * 119.93668 * 180.02562 * 5 4 3 26 26 H 1.08001 * 119.98165 * 180.27761 * 6 5 4 27 27 H 1.09002 * 109.47085 * 299.99758 * 9 8 7 28 28 H 1.09001 * 109.47417 * 59.99884 * 9 8 7 29 29 H 1.09002 * 109.47153 * 299.99990 * 10 9 8 30 30 H 1.08998 * 109.47533 * 59.99620 * 10 9 8 31 31 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 32 32 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 33 33 H 0.96996 * 119.99885 * 179.97438 * 15 14 12 34 34 H 1.08000 * 120.06680 * 0.05327 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2903 2.3754 0.0005 5 6 1.9158 3.6076 0.0011 6 6 3.2950 3.6851 0.0068 7 6 4.0570 2.5228 0.0005 8 16 5.8163 2.6212 0.0004 9 6 6.1251 4.4087 0.0012 10 6 7.6333 4.6657 0.0018 11 6 7.8938 6.1733 0.0019 12 6 9.3794 6.4265 0.0031 13 1 10.0689 5.5952 0.0033 14 6 9.8584 7.7194 0.0028 15 7 9.0189 8.7317 0.0020 16 14 11.6999 8.0331 0.0050 17 1 12.3070 7.4255 -1.2063 18 1 11.9527 9.4965 0.0050 19 1 12.3039 7.4270 1.2187 20 6 3.4296 1.2836 0.0005 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 0.2118 2.3182 0.0002 25 1 1.3252 4.5118 0.0019 26 1 3.7813 4.6495 0.0118 27 1 5.6805 4.8546 -0.8885 28 1 5.6807 4.8538 0.8914 29 1 8.0775 4.2199 0.8917 30 1 8.0782 4.2206 -0.8882 31 1 7.4497 6.6188 -0.8883 32 1 7.4490 6.6188 0.8917 33 1 9.3559 9.6412 0.0022 34 1 4.0191 0.3787 0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579595.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:06 Heat of formation + Delta-G solvation = -33.383875 kcal Electronic energy + Delta-G solvation = -15096.245119 eV Core-core repulsion = 12505.977112 eV Total energy + Delta-G solvation = -2590.268007 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.15041 -37.45509 -34.55584 -32.12425 -31.23161 -30.33822 -27.67634 -27.35072 -23.77164 -22.63734 -22.24887 -20.33945 -18.59859 -16.58487 -16.35363 -16.08557 -15.95009 -15.72016 -14.71114 -14.62451 -14.09468 -14.02292 -13.50207 -13.04976 -12.55866 -12.47948 -11.94084 -11.84369 -11.67819 -11.39321 -11.26185 -10.88193 -10.87711 -10.56826 -9.97857 -9.87902 -9.67430 -9.37828 -9.16203 -8.43043 -8.38942 -7.29030 -6.04164 -4.06998 1.11762 1.33319 1.67077 2.66983 3.12261 3.32411 3.36554 3.39435 3.59968 4.43429 4.62947 4.85682 4.87092 4.87253 5.13078 5.18569 5.28136 5.31658 5.39577 5.40994 5.52698 5.77893 6.00872 6.12953 6.23300 6.32623 6.46516 6.48615 6.62569 6.94955 7.21748 7.59226 7.70795 7.94153 8.35412 8.99062 9.57405 11.07149 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.067500 B = 0.003275 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.715416 B = 8546.944092 C = 8930.607622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.141 3.859 4 C -0.221 4.221 5 C -0.060 4.060 6 C -0.170 4.170 7 C -0.038 4.038 8 S -0.122 6.122 9 C -0.096 4.096 10 C -0.096 4.096 11 C 0.029 3.971 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.894 3.106 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.140 4.140 21 H 0.099 0.901 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.262 0.738 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.362 -13.657 -0.002 22.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.094 3.906 4 C -0.243 4.243 5 C -0.080 4.080 6 C -0.195 4.195 7 C -0.152 4.152 8 S 0.125 5.875 9 C -0.244 4.244 10 C -0.135 4.135 11 C -0.010 4.010 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.165 4.165 21 H 0.117 0.883 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.145 0.855 25 H 0.145 0.855 26 H 0.148 0.852 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.337 -14.505 -0.002 21.847 hybrid contribution -0.330 1.460 0.000 1.497 sum -16.667 -13.045 -0.002 21.165 Atomic orbital electron populations 1.23044 0.78446 1.03820 1.01382 1.86063 1.21320 1.26967 1.88778 1.18799 0.91791 0.84114 0.95910 1.21179 0.99825 0.92337 1.10962 1.20840 0.94054 0.97057 0.96064 1.21231 0.94318 0.97609 1.06297 1.21669 0.97999 0.95277 1.00250 1.85602 0.97703 1.13299 1.90871 1.23992 1.03989 0.91161 1.05249 1.21499 0.88640 1.01607 1.01791 1.19093 0.96922 0.87513 0.97518 1.21172 0.91887 0.92040 1.50984 0.92545 1.25019 0.97943 0.96250 0.95179 1.69950 1.34237 0.98693 1.50611 0.86622 0.85459 0.77023 0.78705 1.20165 1.21266 1.20170 1.19896 0.91273 0.96992 1.08307 0.88310 0.92640 0.92647 0.85535 0.85485 0.85196 0.89646 0.89649 0.92153 0.92159 0.96320 0.96324 0.92864 0.84836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.58 10.49 -19.41 -0.20 -3.78 16 3 C 0.14 1.76 6.68 -39.25 -0.26 1.49 16 4 C -0.22 -2.44 9.04 -39.38 -0.36 -2.79 16 5 C -0.06 -0.70 10.03 -39.64 -0.40 -1.09 16 6 C -0.17 -2.32 9.36 -39.34 -0.37 -2.69 16 7 C -0.04 -0.56 6.11 -39.06 -0.24 -0.80 16 8 S -0.12 -1.93 21.92 -107.50 -2.36 -4.29 16 9 C -0.10 -1.62 4.33 37.16 0.16 -1.46 16 10 C -0.10 -1.95 5.16 -26.74 -0.14 -2.08 16 11 C 0.03 0.72 4.97 -27.89 -0.14 0.58 16 12 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.14 -1.93 9.73 -39.22 -0.38 -2.31 16 21 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 23 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 24 H 0.13 1.04 6.29 -52.48 -0.33 0.71 16 25 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 26 H 0.13 1.73 5.87 -52.49 -0.31 1.43 16 27 H 0.08 1.40 7.76 -51.92 -0.40 1.00 16 28 H 0.08 1.40 7.73 -51.92 -0.40 1.00 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 302.21 15.07 4.55 4.55 Total: -1.00 -30.49 302.21 -8.57 -39.06 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.74 Total: -2.76 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -1.54 Total: -23.39 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -0.20 Total: -3.78 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -2.36 Total: -4.29 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.49 -8.57 -39.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579595.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.671 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds