Wall clock time and date at job start Sun Mar 29 2020 22:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99866 * 2 1 4 4 H 1.48506 * 109.47027 * 239.99995 * 3 2 1 5 5 H 1.48503 * 109.47241 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47075 * 119.99940 * 3 2 1 7 7 C 1.38811 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00089 * 200.86330 * 7 2 1 9 9 N 1.36938 * 120.00016 * 20.86492 * 7 2 1 10 10 C 1.46501 * 119.99874 * 37.90458 * 9 7 2 11 11 N 1.46500 * 109.47029 * 90.00001 * 10 9 7 12 12 N 1.40081 * 126.03862 * 270.15521 * 11 10 9 13 13 C 1.30840 * 108.20939 * 180.29119 * 12 11 10 14 14 C 1.39876 * 108.19604 * 359.74393 * 13 12 11 15 15 C 1.34948 * 126.03774 * 90.00201 * 11 10 9 16 16 N 1.48026 * 126.12662 * 359.97438 * 15 11 10 17 17 O 1.21801 * 120.00264 * 179.72034 * 16 15 11 18 18 O 1.21799 * 120.00068 * 359.43975 * 16 15 11 19 19 C 1.46500 * 120.00233 * 217.90330 * 9 7 2 20 20 C 1.52999 * 117.49699 * 3.29528 * 19 9 7 21 21 C 1.52997 * 60.00036 * 252.50931 * 20 19 9 22 22 H 0.97004 * 120.00492 * 354.94412 * 1 2 3 23 23 H 1.08997 * 109.47236 * 329.99941 * 10 9 7 24 24 H 1.09003 * 109.47137 * 210.00035 * 10 9 7 25 25 H 1.07994 * 125.90268 * 179.77028 * 13 12 11 26 26 H 1.08004 * 126.03430 * 179.97438 * 14 13 12 27 27 H 1.08998 * 115.55153 * 149.00162 * 19 9 7 28 28 H 1.09002 * 117.49628 * 359.97438 * 20 19 9 29 29 H 1.08994 * 117.50102 * 145.02115 * 20 19 9 30 30 H 1.09006 * 117.50246 * 252.51559 * 21 20 19 31 31 H 1.09001 * 117.52296 * 107.47557 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0371 -1.2326 0.3336 9 7 1.3929 -2.3494 -0.4213 10 6 0.4646 -2.3077 -1.5539 11 7 1.2021 -2.5382 -2.7985 12 7 1.7948 -1.5538 -3.5997 13 6 2.3536 -2.1433 -4.6255 14 6 2.1400 -3.5206 -4.5075 15 6 1.4330 -3.7367 -3.3742 16 7 0.9872 -5.0517 -2.8611 17 8 1.2546 -6.0682 -3.4766 18 8 0.3573 -5.1178 -1.8208 19 6 1.6609 -3.6184 0.2598 20 6 2.5793 -3.5834 1.4830 21 6 3.0795 -4.1839 0.1677 22 1 -0.4851 0.8368 0.0740 23 1 -0.0174 -1.3309 -1.5928 24 1 -0.2928 -3.0820 -1.4316 25 1 2.8878 -1.6515 -5.4249 26 1 2.4791 -4.2777 -5.1991 27 1 0.8352 -4.3299 0.2702 28 1 2.9844 -2.6163 1.7806 29 1 2.3579 -4.2719 2.2985 30 1 3.1871 -5.2675 0.1178 31 1 3.8134 -3.6119 -0.4002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050898453.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:08 Heat of formation + Delta-G solvation = 120.964382 kcal Electronic energy + Delta-G solvation = -19297.415755 eV Core-core repulsion = 16199.840328 eV Total energy + Delta-G solvation = -3097.575427 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.48500 -42.06251 -38.99850 -37.76425 -35.75971 -33.90079 -32.36072 -31.54875 -27.88372 -27.32323 -25.54102 -23.16709 -22.65438 -22.49799 -21.81812 -19.95987 -19.72053 -18.90506 -18.35530 -17.61066 -16.73755 -16.57804 -15.90239 -15.83681 -14.96397 -14.88018 -14.68470 -13.81632 -13.29959 -13.13876 -12.90911 -12.81420 -12.68717 -12.38004 -12.36552 -12.32704 -12.08331 -11.86106 -11.57973 -11.22082 -10.91803 -10.63578 -10.04643 -8.88915 -8.17253 -5.75160 -1.05263 -0.08877 0.78721 1.35357 1.43051 1.48656 1.55894 1.57685 2.33269 3.00035 3.16092 3.25409 3.47784 3.80552 4.11224 4.16670 4.27034 4.28954 4.37972 4.63608 4.72518 4.81763 4.92495 5.00498 5.19538 5.34809 5.40655 5.50761 5.69098 6.20237 6.29094 6.62953 6.81270 7.45914 7.97630 8.87304 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.021632 B = 0.009889 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.043504 B = 2830.633778 C = 3544.047782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.005 4.005 3 Si 0.963 3.037 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.284 4.284 8 H 0.055 0.945 9 N -0.533 5.533 10 C 0.347 3.653 11 N -0.329 5.329 12 N -0.260 5.260 13 C 0.037 3.963 14 C -0.171 4.171 15 C 0.087 3.913 16 N 0.060 4.940 17 O -0.127 6.127 18 O -0.185 6.185 19 C 0.093 3.907 20 C -0.169 4.169 21 C -0.209 4.209 22 H 0.265 0.735 23 H 0.113 0.887 24 H 0.091 0.909 25 H 0.241 0.759 26 H 0.200 0.800 27 H 0.110 0.890 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 -5.915 -7.132 9.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.206 4.206 3 Si 0.790 3.210 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.413 4.413 8 H 0.073 0.927 9 N -0.249 5.249 10 C 0.141 3.859 11 N -0.124 5.124 12 N -0.089 5.089 13 C -0.145 4.145 14 C -0.204 4.204 15 C -0.124 4.124 16 N 0.578 4.422 17 O -0.348 6.348 18 O -0.391 6.391 19 C -0.014 4.014 20 C -0.206 4.206 21 C -0.250 4.250 22 H 0.075 0.925 23 H 0.130 0.870 24 H 0.109 0.891 25 H 0.257 0.743 26 H 0.217 0.783 27 H 0.128 0.872 28 H 0.101 0.899 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.217 -4.028 -6.544 8.330 hybrid contribution 0.411 -0.181 0.000 0.449 sum 3.628 -4.209 -6.543 8.585 Atomic orbital electron populations 1.69871 1.06765 1.27735 1.50360 1.25827 0.95773 1.01568 0.97405 0.85434 0.78185 0.79012 0.78391 1.20629 1.20915 1.19800 1.18949 0.94572 0.85645 1.42178 0.92692 1.43935 1.49963 1.03926 1.27031 1.22002 0.87466 1.04193 0.72227 1.52223 1.39883 1.00175 1.20165 1.77755 1.12338 1.14533 1.04308 1.24682 0.99997 0.91831 0.97968 1.21776 1.02832 0.99110 0.96679 1.22197 1.10271 0.80665 0.99233 1.42546 0.98546 1.01374 0.99758 1.94484 1.58957 1.22802 1.58524 1.94557 1.39381 1.93433 1.11771 1.21618 0.92047 0.89378 0.98345 1.23064 1.04006 1.02069 0.91503 1.23247 1.00200 0.99535 1.01974 0.92549 0.86953 0.89140 0.74288 0.78280 0.87209 0.89906 0.86982 0.88353 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.21 11.46 21.65 0.25 -48.97 16 2 C -0.01 -0.29 4.96 84.86 0.42 0.14 16 3 Si 0.96 43.07 29.61 68.60 2.03 45.10 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.28 -14.87 8.37 84.03 0.70 -14.17 16 8 H 0.06 2.96 6.95 -2.91 -0.02 2.94 16 9 N -0.53 -25.80 3.00 -689.69 -2.07 -27.87 16 10 C 0.35 16.23 6.13 170.96 1.05 17.28 16 11 N -0.33 -13.79 3.85 -347.64 -1.34 -15.13 16 12 N -0.26 -10.34 12.58 -57.02 -0.72 -11.06 16 13 C 0.04 1.06 12.03 85.24 1.03 2.08 16 14 C -0.17 -4.80 10.49 21.99 0.23 -4.57 16 15 C 0.09 3.15 7.94 128.05 1.02 4.17 16 16 N 0.06 2.16 4.45 -49.91 -0.22 1.94 16 17 O -0.13 -4.22 19.03 18.88 0.36 -3.86 16 18 O -0.18 -7.17 14.32 18.89 0.27 -6.90 16 19 C 0.09 3.96 5.57 44.99 0.25 4.21 16 20 C -0.17 -6.46 9.78 30.59 0.30 -6.17 16 21 C -0.21 -8.04 10.36 30.59 0.32 -7.72 16 22 H 0.26 13.86 8.32 -92.71 -0.77 13.09 16 23 H 0.11 5.91 5.52 -2.39 -0.01 5.89 16 24 H 0.09 4.10 6.24 -2.39 -0.01 4.08 16 25 H 0.24 4.09 8.06 -2.91 -0.02 4.07 16 26 H 0.20 3.96 8.06 -2.91 -0.02 3.94 16 27 H 0.11 4.55 6.73 -2.39 -0.02 4.53 16 28 H 0.08 3.51 6.58 -2.39 -0.02 3.49 16 29 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 30 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 31 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -59.91 276.11 5.04 -54.87 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 1.16 Total: 16.62 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 5.31 Total: -4.75 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -4.10 Total: -101.08 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.63 Total: -10.76 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -59.91 5.04 -54.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050898453.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.833 kcal (2) G-P(sol) polarization free energy of solvation -59.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds