Wall clock time and date at job start Sun Mar 29 2020 22:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00003 * 2 1 4 4 H 1.48497 * 109.47460 * 239.99988 * 3 2 1 5 5 H 1.48507 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47096 * 119.99704 * 3 2 1 7 7 C 1.38816 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00290 * 200.65460 * 7 2 1 9 9 N 1.36942 * 119.99675 * 20.65281 * 7 2 1 10 10 C 1.46501 * 119.99799 * 37.94537 * 9 7 2 11 11 N 1.46498 * 109.46981 * 90.00102 * 10 9 7 12 12 C 1.34944 * 126.03738 * 94.71309 * 11 10 9 13 13 C 1.35319 * 107.74580 * 179.83851 * 12 11 10 14 14 N 1.48020 * 126.03892 * 180.16504 * 13 12 11 15 15 O 1.21799 * 120.00106 * 180.28002 * 14 13 12 16 16 O 1.21795 * 120.00286 * 0.28230 * 14 13 12 17 17 C 1.39866 * 107.91679 * 0.42086 * 13 12 11 18 18 N 1.30838 * 108.20681 * 359.74082 * 17 13 12 19 19 C 1.46494 * 119.99893 * 217.67025 * 9 7 2 20 20 C 1.53005 * 117.49909 * 14.11441 * 19 9 7 21 21 C 1.52998 * 59.99951 * 252.51102 * 20 19 9 22 22 H 0.96992 * 119.99959 * 354.94878 * 1 2 3 23 23 H 1.09005 * 109.46498 * 209.99813 * 10 9 7 24 24 H 1.09000 * 109.47158 * 329.99595 * 10 9 7 25 25 H 1.07999 * 126.12706 * 0.02562 * 12 11 10 26 26 H 1.08000 * 125.89812 * 179.71485 * 17 13 12 27 27 H 1.09003 * 115.55378 * 159.82149 * 19 9 7 28 28 H 1.08999 * 117.49968 * 359.97438 * 20 19 9 29 29 H 1.08999 * 117.49764 * 145.02109 * 20 19 9 30 30 H 1.09000 * 117.49857 * 252.50891 * 21 20 19 31 31 H 1.08997 * 117.52066 * 107.48094 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0383 -1.2320 0.3305 9 7 1.3917 -2.3502 -0.4173 10 6 0.4604 -2.3107 -1.5475 11 7 1.1946 -2.5441 -2.7935 12 6 1.3478 -3.7326 -3.4139 13 6 2.0839 -3.5234 -4.5300 14 7 2.4891 -4.5543 -5.5119 15 8 3.1596 -4.2432 -6.4799 16 8 2.1521 -5.7137 -5.3518 17 6 2.3991 -2.1620 -4.5886 18 7 1.8665 -1.5739 -3.5482 19 6 1.6657 -3.6188 0.2621 20 6 2.3770 -3.5562 1.6153 21 6 3.1271 -4.0563 0.3791 22 1 -0.4850 0.8367 0.0740 23 1 -0.2968 -3.0846 -1.4214 24 1 -0.0216 -1.3338 -1.5872 25 1 0.9513 -4.6805 -3.0811 26 1 2.9818 -1.6795 -5.3594 27 1 0.9166 -4.3983 0.1226 28 1 2.6416 -2.5712 1.9998 29 1 2.0959 -4.2946 2.3663 30 1 3.3395 -5.1235 0.3168 31 1 3.8847 -3.4004 -0.0498 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050898457.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:30 Heat of formation + Delta-G solvation = 122.322148 kcal Electronic energy + Delta-G solvation = -18525.467000 eV Core-core repulsion = 15427.950450 eV Total energy + Delta-G solvation = -3097.516550 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.81844 -40.69751 -37.47402 -36.04048 -34.22370 -32.35189 -30.68081 -30.28020 -26.55368 -25.24665 -23.82452 -21.70460 -21.12800 -21.01242 -20.29198 -18.60590 -18.04232 -17.14787 -16.98314 -15.89660 -15.75071 -15.02253 -14.43927 -14.17218 -13.94792 -13.08958 -13.00305 -12.30581 -11.67016 -11.39904 -11.30055 -11.16106 -11.09506 -10.90251 -10.82169 -10.73743 -10.44184 -10.35422 -10.11952 -9.82496 -9.41605 -8.95573 -8.85169 -7.21335 -6.38923 -3.93751 0.75276 1.82988 2.08676 2.82287 2.94347 3.17046 3.21589 3.27290 4.06760 4.54688 4.64196 4.74458 4.78057 4.98360 5.23933 5.45632 5.49732 5.69998 5.73639 5.78273 6.18155 6.21709 6.28177 6.60565 6.61834 6.84725 6.88548 7.13366 7.40651 7.72096 7.96589 8.18288 8.55404 9.18383 9.66385 10.67658 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.007407 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.775274 B = 3779.419871 C = 4506.138679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.036 3.964 3 Si 0.913 3.087 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.282 4.282 8 H 0.070 0.930 9 N -0.518 5.518 10 C 0.335 3.665 11 N -0.316 5.316 12 C 0.136 3.864 13 C -0.209 4.209 14 N 0.080 4.920 15 O -0.189 6.189 16 O -0.198 6.198 17 C 0.084 3.916 18 N -0.251 5.251 19 C 0.103 3.897 20 C -0.180 4.180 21 C -0.219 4.219 22 H 0.268 0.732 23 H 0.082 0.918 24 H 0.145 0.855 25 H 0.189 0.811 26 H 0.193 0.807 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 -5.078 -2.137 5.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.168 4.168 3 Si 0.740 3.260 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.411 4.411 8 H 0.087 0.913 9 N -0.231 5.231 10 C 0.130 3.870 11 N -0.101 5.101 12 C -0.024 4.024 13 C -0.309 4.309 14 N 0.590 4.410 15 O -0.399 6.399 16 O -0.406 6.406 17 C -0.106 4.106 18 N -0.071 5.071 19 C -0.005 4.005 20 C -0.218 4.218 21 C -0.259 4.259 22 H 0.079 0.921 23 H 0.100 0.900 24 H 0.162 0.838 25 H 0.206 0.794 26 H 0.210 0.790 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.411 -3.258 -0.847 3.391 hybrid contribution 0.822 -0.330 -0.612 1.076 sum 0.410 -3.587 -1.459 3.895 Atomic orbital electron populations 1.69735 1.05909 1.27746 1.48882 1.25260 0.95214 0.99489 0.96799 0.86208 0.79332 0.81547 0.78881 1.19827 1.21063 1.20317 1.18926 0.95097 0.84339 1.42751 0.91283 1.43957 1.49342 1.03746 1.26049 1.22547 0.87274 1.05705 0.71425 1.52839 1.35581 1.02549 1.19159 1.22477 0.94708 0.94278 0.90897 1.21199 1.20721 0.90066 0.98906 1.42623 0.97428 1.00935 1.00037 1.94481 1.37268 1.87116 1.21080 1.94480 1.60076 1.03805 1.82243 1.23803 0.99404 0.89632 0.97754 1.77865 1.10984 1.15064 1.03207 1.21378 0.92461 0.89831 0.96781 1.23080 1.05061 1.02622 0.91036 1.23353 0.98607 0.99737 1.04191 0.92150 0.89970 0.83811 0.79434 0.78998 0.88531 0.87851 0.90025 0.90224 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.05 11.44 55.49 0.64 -21.41 16 2 C 0.04 0.87 4.97 -17.43 -0.09 0.78 16 3 Si 0.91 20.06 29.60 -169.99 -5.03 15.03 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.28 -6.77 8.05 -15.06 -0.12 -6.89 16 8 H 0.07 1.72 7.20 -52.49 -0.38 1.34 16 9 N -0.52 -10.97 3.02 -169.34 -0.51 -11.48 16 10 C 0.34 6.56 6.64 -63.75 -0.42 6.14 16 11 N -0.32 -5.88 3.85 -64.56 -0.25 -6.13 16 12 C 0.14 2.21 11.17 -17.22 -0.19 2.02 16 13 C -0.21 -3.63 7.11 -80.38 -0.57 -4.20 16 14 N 0.08 1.44 4.45 33.75 0.15 1.59 16 15 O -0.19 -3.47 19.05 -29.46 -0.56 -4.03 16 16 O -0.20 -3.59 19.02 -29.46 -0.56 -4.15 16 17 C 0.08 1.45 11.75 -17.37 -0.20 1.24 16 18 N -0.25 -5.00 12.58 30.62 0.39 -4.61 16 19 C 0.10 1.87 6.62 -67.93 -0.45 1.42 16 20 C -0.18 -3.12 9.81 -26.73 -0.26 -3.38 16 21 C -0.22 -3.75 10.08 -26.73 -0.27 -4.02 16 22 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 23 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 24 H 0.14 3.25 5.51 -51.93 -0.29 2.96 16 25 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 26 H 0.19 2.75 8.06 -52.49 -0.42 2.33 16 27 H 0.10 1.51 8.10 -51.93 -0.42 1.09 16 28 H 0.10 2.02 6.95 -51.93 -0.36 1.66 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.67 8.00 -51.93 -0.42 1.25 16 LS Contribution 285.04 15.07 4.30 4.30 Total: -1.00 -26.57 285.04 -7.13 -33.70 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -3.10 Total: 4.07 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.58 Total: -6.88 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.41 Total: -42.04 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -1.12 Total: -8.18 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -26.57 -7.13 -33.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050898457.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.027 kcal (2) G-P(sol) polarization free energy of solvation -26.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds