Wall clock time and date at job start Sun Mar 29 2020 22:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00003 * 2 1 4 4 H 1.48497 * 109.47460 * 239.99988 * 3 2 1 5 5 H 1.48507 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47096 * 119.99704 * 3 2 1 7 7 C 1.38816 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00290 * 200.65460 * 7 2 1 9 9 N 1.36942 * 119.99675 * 20.65281 * 7 2 1 10 10 C 1.46501 * 119.99799 * 37.94537 * 9 7 2 11 11 N 1.46498 * 109.46981 * 90.00102 * 10 9 7 12 12 C 1.34944 * 126.03738 * 94.71309 * 11 10 9 13 13 C 1.35319 * 107.74580 * 179.83851 * 12 11 10 14 14 N 1.48020 * 126.03892 * 180.16504 * 13 12 11 15 15 O 1.21799 * 120.00106 * 180.28002 * 14 13 12 16 16 O 1.21795 * 120.00286 * 0.28230 * 14 13 12 17 17 C 1.39866 * 107.91679 * 0.42086 * 13 12 11 18 18 N 1.30838 * 108.20681 * 359.74082 * 17 13 12 19 19 C 1.46494 * 119.99893 * 217.67025 * 9 7 2 20 20 C 1.53005 * 117.49909 * 14.11441 * 19 9 7 21 21 C 1.52998 * 59.99951 * 252.51102 * 20 19 9 22 22 H 0.96992 * 119.99959 * 354.94878 * 1 2 3 23 23 H 1.09005 * 109.46498 * 209.99813 * 10 9 7 24 24 H 1.09000 * 109.47158 * 329.99595 * 10 9 7 25 25 H 1.07999 * 126.12706 * 0.02562 * 12 11 10 26 26 H 1.08000 * 125.89812 * 179.71485 * 17 13 12 27 27 H 1.09003 * 115.55378 * 159.82149 * 19 9 7 28 28 H 1.08999 * 117.49968 * 359.97438 * 20 19 9 29 29 H 1.08999 * 117.49764 * 145.02109 * 20 19 9 30 30 H 1.09000 * 117.49857 * 252.50891 * 21 20 19 31 31 H 1.08997 * 117.52066 * 107.48094 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0383 -1.2320 0.3305 9 7 1.3917 -2.3502 -0.4173 10 6 0.4604 -2.3107 -1.5475 11 7 1.1946 -2.5441 -2.7935 12 6 1.3478 -3.7326 -3.4139 13 6 2.0839 -3.5234 -4.5300 14 7 2.4891 -4.5543 -5.5119 15 8 3.1596 -4.2432 -6.4799 16 8 2.1521 -5.7137 -5.3518 17 6 2.3991 -2.1620 -4.5886 18 7 1.8665 -1.5739 -3.5482 19 6 1.6657 -3.6188 0.2621 20 6 2.3770 -3.5562 1.6153 21 6 3.1271 -4.0563 0.3791 22 1 -0.4850 0.8367 0.0740 23 1 -0.2968 -3.0846 -1.4214 24 1 -0.0216 -1.3338 -1.5872 25 1 0.9513 -4.6805 -3.0811 26 1 2.9818 -1.6795 -5.3594 27 1 0.9166 -4.3983 0.1226 28 1 2.6416 -2.5712 1.9998 29 1 2.0959 -4.2946 2.3663 30 1 3.3395 -5.1235 0.3168 31 1 3.8847 -3.4004 -0.0498 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050898457.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:29 Heat of formation + Delta-G solvation = 108.825896 kcal Electronic energy + Delta-G solvation = -18526.052241 eV Core-core repulsion = 15427.950450 eV Total energy + Delta-G solvation = -3098.101792 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.22279 -42.11178 -38.94841 -37.45441 -35.75108 -33.98220 -32.09072 -31.86071 -28.10050 -26.79394 -25.34590 -23.06347 -22.54986 -22.40077 -21.81577 -20.02890 -19.44778 -18.70168 -18.45446 -17.45790 -17.16553 -16.66616 -15.94398 -15.72676 -15.35719 -14.62798 -14.29929 -13.78707 -13.34435 -13.06191 -12.85617 -12.82984 -12.60026 -12.36724 -12.29084 -12.15924 -12.09524 -11.83905 -11.66892 -11.18621 -10.85325 -10.64681 -10.34176 -8.85656 -8.19518 -5.75328 -0.63916 0.43168 0.70851 1.35018 1.42669 1.45178 1.47411 1.58987 2.32107 3.00100 3.16099 3.26141 3.41521 3.53833 3.87214 4.15727 4.18210 4.31132 4.35939 4.40892 4.86345 4.88766 4.93121 5.05660 5.21213 5.45132 5.47630 5.52199 5.73369 6.19741 6.37652 6.75953 6.83022 7.46991 7.92578 8.84220 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.007407 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.775274 B = 3779.419871 C = 4506.138679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.000 4.000 3 Si 0.951 3.049 4 H -0.285 1.285 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.279 4.279 8 H 0.050 0.950 9 N -0.536 5.536 10 C 0.343 3.657 11 N -0.326 5.326 12 C 0.158 3.842 13 C -0.220 4.220 14 N 0.081 4.919 15 O -0.203 6.203 16 O -0.192 6.192 17 C 0.093 3.907 18 N -0.296 5.296 19 C 0.091 3.909 20 C -0.180 4.180 21 C -0.208 4.208 22 H 0.264 0.736 23 H 0.119 0.881 24 H 0.113 0.887 25 H 0.227 0.773 26 H 0.216 0.784 27 H 0.131 0.869 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.030 -6.999 -2.322 7.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.201 4.201 3 Si 0.779 3.221 4 H -0.212 1.212 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.409 4.409 8 H 0.068 0.932 9 N -0.251 5.251 10 C 0.138 3.862 11 N -0.111 5.111 12 C -0.001 4.001 13 C -0.320 4.320 14 N 0.590 4.410 15 O -0.410 6.410 16 O -0.402 6.402 17 C -0.097 4.097 18 N -0.116 5.116 19 C -0.015 4.015 20 C -0.219 4.219 21 C -0.248 4.248 22 H 0.074 0.926 23 H 0.137 0.863 24 H 0.130 0.870 25 H 0.243 0.757 26 H 0.233 0.767 27 H 0.149 0.851 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.645 -5.169 -1.054 5.314 hybrid contribution 0.943 0.162 -0.635 1.149 sum 0.299 -5.007 -1.689 5.293 Atomic orbital electron populations 1.69807 1.06311 1.27607 1.50575 1.25643 0.95718 1.01048 0.97646 0.85610 0.78386 0.79937 0.78162 1.21156 1.20970 1.20058 1.18827 0.94314 0.85767 1.42012 0.93239 1.44030 1.49597 1.04018 1.27416 1.22294 0.87177 1.05513 0.71230 1.52292 1.36172 1.03233 1.19397 1.22976 0.92969 0.94484 0.89720 1.21264 1.21437 0.89961 0.99306 1.42643 0.97338 1.00982 1.00023 1.94491 1.37886 1.87188 1.21442 1.94470 1.59739 1.03875 1.82104 1.24217 0.98280 0.89889 0.97275 1.77840 1.12647 1.16511 1.04594 1.21720 0.93673 0.89322 0.96822 1.23074 1.05125 1.01978 0.91680 1.23281 0.97278 1.00714 1.03513 0.92610 0.86310 0.86993 0.75652 0.76749 0.85111 0.90920 0.87003 0.87238 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.57 11.44 21.65 0.25 -45.32 16 2 C 0.00 0.00 4.97 84.86 0.42 0.43 16 3 Si 0.95 41.97 29.60 68.60 2.03 44.00 16 4 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.28 -13.55 8.05 84.03 0.68 -12.88 16 8 H 0.05 2.54 7.20 -2.91 -0.02 2.52 16 9 N -0.54 -22.16 3.02 -689.68 -2.08 -24.25 16 10 C 0.34 12.91 6.64 170.96 1.14 14.04 16 11 N -0.33 -11.58 3.85 -358.17 -1.38 -12.96 16 12 C 0.16 4.64 11.17 83.54 0.93 5.57 16 13 C -0.22 -7.08 7.11 36.10 0.26 -6.83 16 14 N 0.08 2.73 4.45 -47.13 -0.21 2.52 16 15 O -0.20 -7.06 19.05 18.89 0.36 -6.70 16 16 O -0.19 -6.37 19.02 18.89 0.36 -6.01 16 17 C 0.09 3.09 11.75 85.24 1.00 4.09 16 18 N -0.30 -11.57 12.58 -57.02 -0.72 -12.29 16 19 C 0.09 3.08 6.62 44.99 0.30 3.38 16 20 C -0.18 -5.94 9.81 30.60 0.30 -5.64 16 21 C -0.21 -6.67 10.08 30.59 0.31 -6.37 16 22 H 0.26 13.07 8.32 -92.71 -0.77 12.30 16 23 H 0.12 3.53 8.03 -2.38 -0.02 3.51 16 24 H 0.11 5.05 5.51 -2.39 -0.01 5.04 16 25 H 0.23 4.73 8.06 -2.91 -0.02 4.71 16 26 H 0.22 5.81 8.06 -2.91 -0.02 5.79 16 27 H 0.13 3.50 8.10 -2.39 -0.02 3.48 16 28 H 0.07 2.85 6.95 -2.39 -0.02 2.84 16 29 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.06 2.16 8.00 -2.39 -0.02 2.14 16 Total: -1.00 -57.32 285.04 5.09 -52.23 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.16 Total: 13.00 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.33 Total: -4.21 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -4.14 Total: -92.31 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.72 Total: -12.71 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -57.32 5.09 -52.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050898457.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.057 kcal (2) G-P(sol) polarization free energy of solvation -57.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds