Wall clock time and date at job start Sun Mar 29 2020 23:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00152 * 2 1 4 4 H 1.48503 * 109.46834 * 270.00015 * 3 2 1 5 5 H 1.48502 * 109.46907 * 29.99543 * 3 2 1 6 6 H 1.48494 * 109.47418 * 149.99855 * 3 2 1 7 7 C 1.38811 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00331 * 197.03097 * 7 2 1 9 9 N 1.36940 * 119.99765 * 17.02121 * 7 2 1 10 10 C 1.47080 * 120.87963 * 206.63886 * 9 7 2 11 11 C 1.53244 * 108.52228 * 231.21069 * 10 9 7 12 12 N 1.46901 * 109.33826 * 306.17064 * 11 10 9 13 13 C 1.46894 * 110.99999 * 187.25391 * 12 11 10 14 14 C 1.50695 * 109.47312 * 170.00180 * 13 12 11 15 15 C 1.33391 * 125.20289 * 89.99698 * 14 13 12 16 16 C 1.38429 * 114.92194 * 179.97438 * 15 14 13 17 17 C 1.33389 * 114.91996 * 0.02562 * 16 15 14 18 18 S 1.75886 * 109.59489 * 359.97438 * 17 16 15 19 19 C 1.46901 * 111.26845 * 63.10566 * 12 11 10 20 20 C 1.47077 * 120.88184 * 26.66800 * 9 7 2 21 21 H 0.96997 * 119.99762 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.62636 * 111.49978 * 10 9 7 23 23 H 1.08995 * 109.79423 * 351.01605 * 10 9 7 24 24 H 1.09002 * 109.48986 * 186.21306 * 11 10 9 25 25 H 1.08995 * 109.51336 * 66.14413 * 11 10 9 26 26 H 1.09006 * 109.47313 * 49.99977 * 13 12 11 27 27 H 1.09004 * 109.47201 * 290.00241 * 13 12 11 28 28 H 1.08003 * 122.54184 * 359.96336 * 15 14 13 29 29 H 1.07995 * 122.53809 * 180.02562 * 16 15 14 30 30 H 1.08003 * 125.20418 * 180.26120 * 17 16 15 31 31 H 1.08997 * 109.49405 * 56.85087 * 19 12 11 32 32 H 1.08996 * 109.49557 * 176.93570 * 19 12 11 33 33 H 1.08998 * 109.62551 * 248.50006 * 20 9 7 34 34 H 1.08995 * 109.62602 * 8.88441 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2745 9 7 1.3706 -2.3622 -0.3461 10 6 1.8302 -3.6608 0.1694 11 6 2.0035 -4.6202 -1.0129 12 7 0.7571 -4.6659 -1.7890 13 6 0.8223 -5.7012 -2.8291 14 6 -0.5434 -5.8883 -3.4380 15 6 -1.0127 -5.2211 -4.4934 16 6 -2.2985 -5.5635 -4.8753 17 6 -2.8735 -6.5083 -4.1296 18 16 -1.7623 -7.0200 -2.8659 19 6 0.4433 -3.3541 -2.3709 20 6 0.2061 -2.3428 -1.2443 21 1 -0.4850 0.8400 -0.0004 22 1 1.0902 -4.0626 0.8616 23 1 2.7833 -3.5374 0.6835 24 1 2.2370 -5.6177 -0.6406 25 1 2.8159 -4.2702 -1.6497 26 1 1.1547 -6.6403 -2.3867 27 1 1.5263 -5.3949 -3.6030 28 1 -0.4336 -4.4705 -5.0108 29 1 -2.7982 -5.1007 -5.7134 30 1 -3.8675 -6.9024 -4.2817 31 1 1.2773 -3.0213 -2.9887 32 1 -0.4547 -3.4333 -2.9836 33 1 -0.6900 -2.6179 -0.6880 34 1 0.0842 -1.3444 -1.6642 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052661972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:56 Heat of formation + Delta-G solvation = 68.868154 kcal Electronic energy + Delta-G solvation = -16525.025132 eV Core-core repulsion = 13971.483857 eV Total energy + Delta-G solvation = -2553.541275 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.58062 -37.19970 -34.43609 -31.68952 -29.90128 -29.84412 -26.94038 -24.86759 -23.01787 -22.54492 -21.81062 -19.29218 -18.84153 -17.00834 -16.67423 -15.39513 -15.23513 -14.53421 -14.40433 -13.74852 -13.43586 -13.18417 -13.14501 -12.72487 -12.52401 -12.25997 -11.89271 -11.40143 -11.32638 -11.04840 -10.74187 -10.60145 -10.44208 -10.27715 -10.03437 -9.73372 -9.59529 -8.57667 -8.47757 -8.31100 -7.80824 -6.64198 -5.75540 -3.16946 1.12285 1.78719 2.16434 2.85962 3.39128 3.45799 3.47227 4.46990 4.54043 4.97366 5.14834 5.29708 5.41147 5.47289 5.59509 5.69042 5.75350 5.92688 5.95862 6.15428 6.23183 6.27043 6.35499 6.40855 6.57213 6.60447 6.73566 6.95296 7.27185 7.58011 7.68642 7.73184 7.84355 8.46002 9.23719 9.87188 10.45972 11.33197 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.035851 B = 0.005414 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.832678 B = 5170.508344 C = 5557.679493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.528 5.528 13 C 0.119 3.881 14 C -0.149 4.149 15 C -0.145 4.145 16 C -0.131 4.131 17 C -0.226 4.226 18 S 0.109 5.891 19 C 0.033 3.967 20 C 0.179 3.821 21 H 0.254 0.746 22 H 0.025 0.975 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.029 0.971 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.159 0.841 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 -13.049 -8.489 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.085 4.085 12 N -0.253 5.253 13 C -0.010 4.010 14 C -0.267 4.267 15 C -0.175 4.175 16 C -0.161 4.161 17 C -0.362 4.362 18 S 0.372 5.628 19 C -0.096 4.096 20 C 0.053 3.947 21 H 0.064 0.936 22 H 0.043 0.957 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.177 0.823 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.724 -14.065 -6.955 15.925 hybrid contribution 0.968 2.154 -1.762 2.947 sum -1.756 -11.911 -8.717 14.864 Atomic orbital electron populations 1.70037 1.05204 1.25436 1.54085 1.25025 0.95297 0.98336 1.01076 0.86285 0.79087 0.83744 0.77636 1.21528 1.21745 1.20471 1.19211 0.92581 0.84812 1.41550 0.91631 1.44130 1.34248 1.01241 1.52239 1.20961 0.97803 0.86494 0.92503 1.22646 0.89382 0.99517 0.96912 1.61994 1.34451 1.05815 1.23015 1.20547 0.89823 0.96848 0.93806 1.24409 1.00470 1.01955 0.99849 1.20131 0.96453 1.02243 0.98719 1.20107 0.95306 0.99018 1.01713 1.25567 1.04106 1.05269 1.01273 1.84186 1.06762 1.39759 1.32070 1.22971 0.98960 0.88937 0.98733 1.20845 0.88902 0.96527 0.88393 0.93633 0.95659 0.92560 0.91991 0.95309 0.90390 0.93558 0.84648 0.84670 0.82307 0.95833 0.91599 0.95673 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 11.15 55.49 0.62 -26.03 16 2 C 0.00 0.03 4.93 -17.43 -0.09 -0.05 16 3 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -7.03 9.63 -15.06 -0.15 -7.18 16 8 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 9 N -0.60 -15.38 3.04 -172.01 -0.52 -15.90 16 10 C 0.15 3.23 6.69 -3.60 -0.02 3.21 16 11 C 0.04 0.81 5.62 -3.70 -0.02 0.79 16 12 N -0.53 -9.65 4.62 -235.76 -1.09 -10.73 16 13 C 0.12 1.77 5.46 -4.98 -0.03 1.74 16 14 C -0.15 -2.14 5.44 -36.00 -0.20 -2.34 16 15 C -0.14 -1.97 8.44 -41.21 -0.35 -2.32 16 16 C -0.13 -1.59 10.18 -41.21 -0.42 -2.01 16 17 C -0.23 -2.66 11.23 29.04 0.33 -2.34 16 18 S 0.11 1.42 23.33 -107.50 -2.51 -1.09 16 19 C 0.03 0.67 5.42 -3.70 -0.02 0.65 16 20 C 0.18 4.46 5.43 -3.60 -0.02 4.44 16 21 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 24 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 1.04 7.97 -51.93 -0.41 0.63 16 27 H 0.05 0.67 8.12 -51.93 -0.42 0.24 16 28 H 0.14 1.75 8.01 -52.48 -0.42 1.33 16 29 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 1.26 5.86 -51.93 -0.30 0.95 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 2.41 6.11 -51.93 -0.32 2.09 16 LS Contribution 288.42 15.07 4.35 4.35 Total: -1.00 -30.17 288.42 -9.95 -40.12 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.79 Total: -2.17 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -0.98 Total: -5.41 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.99 Total: -52.66 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.51 Total: -1.09 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.17 -9.95 -40.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052661972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.990 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds