Wall clock time and date at job start Sun Mar 29 2020 23:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99796 * 2 1 4 4 H 1.48492 * 109.46899 * 269.99965 * 3 2 1 5 5 H 1.48504 * 109.47104 * 29.99865 * 3 2 1 6 6 H 1.48498 * 109.46937 * 149.99738 * 3 2 1 7 7 C 1.37878 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99890 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99703 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46926 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46938 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99618 * 179.97438 * 11 10 9 13 13 O 1.21585 * 119.99927 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99783 * 180.27212 * 12 11 10 15 15 C 1.40084 * 120.00111 * 175.26830 * 14 12 11 16 16 C 1.38792 * 120.07469 * 34.64262 * 15 14 12 17 17 C 1.38149 * 119.95490 * 179.97438 * 16 15 14 18 18 C 1.38275 * 120.10829 * 0.02562 * 17 16 15 19 19 C 1.38270 * 120.15577 * 359.97438 * 18 17 16 20 20 C 1.38301 * 120.04342 * 359.74400 * 19 18 17 21 21 F 1.35108 * 120.05732 * 180.25704 * 20 19 18 22 22 H 0.96996 * 120.00536 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47897 * 59.99858 * 9 7 2 24 24 H 1.09001 * 109.47081 * 299.99728 * 9 7 2 25 25 H 1.08996 * 109.47411 * 59.99777 * 10 9 7 26 26 H 1.09001 * 109.46727 * 299.99588 * 10 9 7 27 27 H 0.96992 * 120.00670 * 359.97438 * 11 10 9 28 28 H 0.97008 * 120.00232 * 355.27442 * 14 12 11 29 29 H 1.08002 * 120.02441 * 359.95987 * 16 15 14 30 30 H 1.07993 * 119.94915 * 179.97438 * 17 16 15 31 31 H 1.08003 * 119.92281 * 179.97438 * 18 17 16 32 32 H 1.08003 * 119.97935 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 7 5.4866 -2.6363 0.0009 12 6 6.1605 -3.8036 0.0014 13 8 5.5526 -4.8565 0.0022 14 7 7.5082 -3.8035 0.0069 15 6 8.2083 -5.0127 0.1074 16 6 7.7028 -6.1606 -0.4870 17 6 8.3955 -7.3516 -0.3868 18 6 9.5916 -7.4023 0.3052 19 6 10.0994 -6.2615 0.8991 20 6 9.4141 -5.0645 0.7978 21 9 9.9126 -3.9485 1.3736 22 1 -0.4851 0.8400 0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8889 25 1 3.6586 -3.1501 -0.8892 26 1 3.6579 -3.1504 0.8908 27 1 5.9716 -1.7964 0.0006 28 1 7.9935 -2.9661 -0.0587 29 1 6.7684 -6.1227 -1.0273 30 1 8.0019 -8.2448 -0.8489 31 1 10.1305 -8.3351 0.3821 32 1 11.0340 -6.3042 1.4385 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:52 Heat of formation + Delta-G solvation = -51.580494 kcal Electronic energy + Delta-G solvation = -17440.895090 eV Core-core repulsion = 14315.917593 eV Total energy + Delta-G solvation = -3124.977496 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.04209 -40.49214 -38.59831 -35.36941 -34.63976 -32.86024 -30.80222 -30.47888 -29.07716 -25.05804 -23.33914 -22.54042 -20.86762 -20.78986 -18.64532 -17.82409 -17.27989 -16.82659 -16.29516 -15.76421 -15.30758 -15.18433 -14.53591 -14.21465 -14.06584 -13.82083 -13.69119 -13.15055 -12.64203 -12.54923 -12.09030 -11.66047 -11.53135 -11.28640 -10.61172 -10.40501 -10.30687 -10.00608 -9.83824 -9.36675 -8.98574 -8.76454 -8.63024 -8.18750 -6.13583 -4.14119 0.96059 1.08544 2.63079 3.17112 3.23372 3.31275 3.32235 3.56096 4.03300 4.30021 4.35330 4.57595 4.79331 5.05195 5.19207 5.19305 5.39689 5.76853 5.94434 5.96492 6.08095 6.16492 6.24966 6.34453 6.51202 6.65141 6.81995 6.85434 7.14878 7.19164 7.63102 8.03391 8.41095 8.62815 8.90625 9.46205 10.99389 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.045897 B = 0.003894 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.910989 B = 7188.623761 C = 7698.158853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.077 0.923 9 C -0.022 4.022 10 C 0.147 3.853 11 N -0.733 5.733 12 C 0.700 3.300 13 O -0.575 6.575 14 N -0.690 5.690 15 C 0.145 3.855 16 C -0.096 4.096 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.137 4.137 20 C 0.062 3.938 21 F -0.140 7.140 22 H 0.265 0.735 23 H 0.022 0.978 24 H 0.018 0.982 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.395 0.605 28 H 0.408 0.592 29 H 0.153 0.847 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.577 -10.026 -0.398 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.095 0.905 9 C -0.060 4.060 10 C 0.024 3.976 11 N -0.386 5.386 12 C 0.401 3.599 13 O -0.452 6.452 14 N -0.338 5.338 15 C 0.048 3.952 16 C -0.117 4.117 17 C -0.129 4.129 18 C -0.135 4.135 19 C -0.156 4.156 20 C 0.040 3.960 21 F -0.119 7.119 22 H 0.075 0.925 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.228 0.772 28 H 0.243 0.757 29 H 0.171 0.829 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 20.736 -10.739 -0.363 23.355 hybrid contribution 0.907 2.036 0.140 2.233 sum 21.643 -8.703 -0.223 23.329 Atomic orbital electron populations 1.69897 1.06290 1.27107 1.50283 1.24996 0.94767 0.99149 0.94331 0.86749 0.80255 0.83543 0.78500 1.20214 1.21236 1.19112 1.20892 0.88519 0.94958 1.51823 0.90535 1.19807 0.98039 0.91212 0.96920 1.21481 0.74040 1.00223 1.01822 1.45570 1.09243 1.06020 1.77804 1.15976 0.80523 0.85318 0.78120 1.90901 1.67200 1.30131 1.57016 1.42599 1.05709 1.07929 1.77572 1.17559 0.91664 0.87668 0.98330 1.21389 1.01084 0.90888 0.98311 1.21166 0.94704 0.97879 0.99113 1.20979 0.96419 0.97819 0.98234 1.20941 1.01056 0.91117 1.02474 1.17508 0.95349 0.83804 0.99382 1.91475 1.87234 1.50538 1.82639 0.92499 0.95935 0.96374 0.91793 0.91794 0.77211 0.75667 0.82915 0.85033 0.85112 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 10 C 0.15 2.93 5.61 -4.04 -0.02 2.91 16 11 N -0.73 -11.86 5.56 -65.22 -0.36 -12.22 16 12 C 0.70 11.56 8.41 -86.92 -0.73 10.83 16 13 O -0.58 -11.37 13.76 5.29 0.07 -11.30 16 14 N -0.69 -9.05 5.24 -14.16 -0.07 -9.13 16 15 C 0.14 1.89 6.32 -83.58 -0.53 1.36 16 16 C -0.10 -1.23 8.70 -39.41 -0.34 -1.57 16 17 C -0.11 -1.08 10.04 -39.60 -0.40 -1.48 16 18 C -0.12 -0.99 10.04 -39.56 -0.40 -1.38 16 19 C -0.14 -1.29 10.02 -39.55 -0.40 -1.68 16 20 C 0.06 0.72 7.31 -39.26 -0.29 0.43 16 21 F -0.14 -1.67 16.95 2.25 0.04 -1.64 16 22 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 24 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 27 H 0.39 5.24 8.49 -40.82 -0.35 4.89 16 28 H 0.41 4.21 8.67 -40.82 -0.35 3.85 16 29 H 0.15 2.22 6.19 -52.49 -0.33 1.89 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 284.30 15.07 4.28 4.28 Total: -1.00 -32.16 284.30 -7.08 -39.24 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -3.49 Total: 5.09 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -3.65 Total: -4.15 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.34 Total: -47.72 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.07 Total: -11.30 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.16 -7.08 -39.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.345 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds