Wall clock time and date at job start Sun Mar 29 2020 22:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38250 * 120.00150 * 2 1 4 4 C 1.38210 * 120.00341 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99789 * 359.77241 * 4 3 2 6 6 C 1.38215 * 119.99662 * 0.45779 * 5 4 3 7 7 C 1.50695 * 119.99733 * 179.78805 * 6 5 4 8 8 S 1.81397 * 109.47452 * 269.72815 * 7 6 5 9 9 O 1.42100 * 109.46829 * 63.61710 * 8 7 6 10 10 C 1.81404 * 103.00143 * 180.02562 * 8 7 6 11 11 C 1.53000 * 109.46946 * 180.02562 * 10 8 7 12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 8 13 13 H 1.07996 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99611 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99711 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00219 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46794 * 90.00022 * 16 14 12 18 18 H 1.48502 * 109.47140 * 210.00005 * 16 14 12 19 19 H 1.48501 * 109.46982 * 330.00118 * 16 14 12 20 20 C 1.38209 * 119.99875 * 179.97438 * 2 1 3 21 21 H 1.08997 * 109.47469 * 270.01935 * 1 2 3 22 22 H 1.09005 * 109.47147 * 30.02629 * 1 2 3 23 23 H 1.09006 * 109.47164 * 150.02178 * 1 2 3 24 24 H 1.08002 * 120.00248 * 359.97438 * 3 2 1 25 25 H 1.08002 * 120.00359 * 179.97438 * 4 3 2 26 26 H 1.08001 * 119.99911 * 180.25351 * 5 4 3 27 27 H 1.09007 * 109.47042 * 149.73001 * 7 6 5 28 28 H 1.09007 * 109.47150 * 29.73439 * 7 6 5 29 29 H 1.09002 * 109.47124 * 60.00087 * 10 8 7 30 30 H 1.09001 * 109.46975 * 300.00209 * 10 8 7 31 31 H 1.09001 * 109.47194 * 299.99756 * 11 10 8 32 32 H 1.08992 * 109.47399 * 59.99928 * 11 10 8 33 33 H 0.97000 * 119.99684 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.00286 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0058 6 6 3.5806 -1.1970 0.0010 7 6 4.3340 -2.5021 0.0020 8 16 4.6364 -3.0270 -1.7079 9 8 5.4741 -2.0780 -2.3535 10 6 5.5370 -4.5883 -1.5022 11 6 5.8721 -5.1686 -2.8776 12 6 6.6197 -6.4660 -2.7067 13 1 6.8347 -6.8389 -1.7163 14 6 7.0293 -7.1767 -3.8150 15 7 7.6821 -8.3086 -3.6659 16 14 6.6568 -6.5319 -5.5282 17 1 7.7710 -5.6617 -5.9825 18 1 6.5072 -7.6742 -6.4653 19 1 5.3963 -5.7475 -5.4987 20 6 2.1980 -1.1969 0.0005 21 1 -0.3634 0.0003 1.0276 22 1 -0.3634 0.8898 -0.5143 23 1 -0.3634 -0.8902 -0.5135 24 1 1.6583 2.1326 -0.0004 25 1 4.1204 2.1326 0.0001 26 1 5.3517 0.0000 0.0104 27 1 3.7449 -3.2614 0.5163 28 1 5.2865 -2.3714 0.5158 29 1 4.9174 -5.2951 -0.9503 30 1 6.4593 -4.4058 -0.9507 31 1 4.9500 -5.3511 -3.4295 32 1 6.4918 -4.4617 -3.4291 33 1 7.9699 -8.8088 -4.4456 34 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084256663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:49 Heat of formation + Delta-G solvation = -55.789315 kcal Electronic energy + Delta-G solvation = -15473.378655 eV Core-core repulsion = 12882.139076 eV Total energy + Delta-G solvation = -2591.239579 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.28160 -36.77200 -35.72133 -34.42941 -33.26198 -32.86219 -28.49131 -27.66785 -27.32830 -23.16871 -22.76565 -21.51918 -19.21698 -18.31868 -17.38802 -16.57670 -16.53182 -16.16269 -15.92196 -15.75060 -15.23122 -14.70669 -14.52060 -14.26368 -13.98778 -13.87919 -13.54505 -13.19427 -12.96956 -12.85521 -12.69062 -12.44003 -12.06837 -11.96445 -11.84565 -11.79276 -11.56026 -11.03113 -10.81799 -9.70462 -9.56677 -9.02541 -8.33651 -6.38681 0.13362 0.47483 0.88663 1.34172 1.35815 1.47366 1.78955 2.32960 2.81539 2.92531 3.01397 3.69692 3.86578 4.06208 4.20385 4.25307 4.29953 4.38460 4.53871 4.63297 4.71830 4.82735 4.87188 4.96764 5.03600 5.22136 5.30803 5.31144 5.38243 5.54413 5.56407 5.64726 5.71752 6.13427 6.22593 6.68132 7.25915 8.82702 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.042991 B = 0.004201 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.149548 B = 6662.740617 C = 6703.595804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.130 4.130 4 C -0.125 4.125 5 C -0.151 4.151 6 C -0.074 4.074 7 C -0.402 4.402 8 S 1.281 4.719 9 O -0.911 6.911 10 C -0.419 4.419 11 C -0.001 4.001 12 C -0.531 4.531 13 H 0.037 0.963 14 C 0.007 3.993 15 N -0.948 5.948 16 Si 0.938 3.062 17 H -0.280 1.280 18 H -0.273 1.273 19 H -0.233 1.233 20 C -0.119 4.119 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.144 0.856 25 H 0.132 0.868 26 H 0.098 0.902 27 H 0.167 0.833 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.056 0.944 31 H 0.053 0.947 32 H -0.002 1.002 33 H 0.268 0.732 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.210 16.758 8.157 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.170 4.170 6 C -0.075 4.075 7 C -0.538 4.538 8 S 1.484 4.516 9 O -0.906 6.906 10 C -0.557 4.557 11 C -0.040 4.040 12 C -0.570 4.570 13 H 0.055 0.945 14 C -0.190 4.190 15 N -0.588 5.588 16 Si 0.761 3.239 17 H -0.206 1.206 18 H -0.198 1.198 19 H -0.156 1.156 20 C -0.138 4.138 21 H 0.099 0.901 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.162 0.838 25 H 0.150 0.850 26 H 0.116 0.884 27 H 0.184 0.816 28 H 0.101 0.899 29 H 0.158 0.842 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.017 0.983 33 H 0.077 0.923 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -19.363 17.064 7.215 26.798 hybrid contribution 3.087 0.122 0.540 3.136 sum -16.276 17.186 7.755 24.908 Atomic orbital electron populations 1.20864 0.88613 1.04098 1.03338 1.20349 0.97900 0.92643 0.98012 1.21376 0.93654 0.99046 1.00804 1.21320 0.95370 0.97691 0.99927 1.21201 0.99488 0.93783 1.02540 1.19269 0.94642 0.92475 1.01155 1.26669 1.05481 1.02456 1.19231 1.69684 1.10847 0.84660 0.86405 1.92979 1.72093 1.59058 1.66504 1.27508 1.09209 1.15434 1.03511 1.19201 0.97315 0.94371 0.93086 1.21414 1.36117 1.05899 0.93584 0.94480 1.25985 0.94282 0.94798 1.03980 1.70045 1.40347 1.16520 1.31915 0.85837 0.80647 0.78616 0.78830 1.20575 1.19843 1.15604 1.21358 0.92130 0.99889 1.00418 0.90074 0.90684 0.89939 0.83817 0.84998 0.88361 0.81558 0.89922 0.84222 0.92538 0.92867 0.98326 0.92307 0.82018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 71.24 0.71 -0.38 16 2 C -0.09 -1.48 5.88 -19.87 -0.12 -1.60 16 3 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 4 C -0.13 -2.79 10.05 22.27 0.22 -2.56 16 5 C -0.15 -4.06 9.70 22.27 0.22 -3.84 16 6 C -0.07 -1.76 5.14 -19.87 -0.10 -1.86 16 7 C -0.40 -9.14 6.05 71.23 0.43 -8.70 16 8 S 1.28 37.65 13.14 -56.49 -0.74 36.91 16 9 O -0.91 -39.40 18.14 -148.98 -2.70 -42.11 16 10 C -0.42 -15.46 5.86 71.98 0.42 -15.04 16 11 C 0.00 -0.06 4.05 29.85 0.12 0.06 16 12 C -0.53 -31.04 9.66 25.60 0.25 -30.79 16 13 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 14 C 0.01 0.41 5.47 84.66 0.46 0.88 16 15 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 16 Si 0.94 44.71 27.47 68.60 1.88 46.59 16 17 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.23 -9.96 6.54 99.48 0.65 -9.31 16 20 C -0.12 -2.14 9.36 22.27 0.21 -1.93 16 21 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 22 H 0.07 0.60 8.09 -2.38 -0.02 0.58 16 23 H 0.08 0.62 8.09 -2.38 -0.02 0.60 16 24 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 25 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 26 H 0.10 2.91 8.06 -2.91 -0.02 2.88 16 27 H 0.17 2.38 8.09 -2.39 -0.02 2.36 16 28 H 0.08 2.11 8.08 -2.39 -0.02 2.09 16 29 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.05 2.25 7.20 -2.39 -0.02 2.23 16 32 H 0.00 -0.08 7.57 -2.39 -0.02 -0.10 16 33 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -81.71 304.46 2.79 -78.92 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.01 Total: 7.23 kcal Atomic # 6 Polarization: -70.95 SS G_CDS: 3.04 Total: -67.91 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.30 Total: -59.63 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -2.70 Total: -42.11 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Atomic # 16 Polarization: 37.65 SS G_CDS: -0.74 Total: 36.91 kcal Total: -81.71 2.79 -78.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084256663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.129 kcal (2) G-P(sol) polarization free energy of solvation -81.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds