Wall clock time and date at job start Sun Mar 29 2020 22:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38255 * 119.99507 * 2 1 4 4 C 1.38217 * 119.99740 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00087 * 359.94716 * 4 3 2 6 6 C 1.38215 * 119.99734 * 0.05278 * 5 4 3 7 7 C 1.38212 * 120.00209 * 179.97438 * 2 1 3 8 8 C 1.50696 * 120.00198 * 359.97438 * 7 2 1 9 9 S 1.81404 * 109.47280 * 270.02641 * 8 7 2 10 10 O 1.42101 * 109.47063 * 63.60908 * 9 8 7 11 11 C 1.81399 * 103.00174 * 179.97438 * 9 8 7 12 12 C 1.52996 * 109.47220 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47165 * 180.02562 * 12 11 9 14 14 H 1.07996 * 119.99853 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00036 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99961 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99657 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47073 * 90.00550 * 17 15 13 19 19 H 1.48503 * 109.46935 * 209.99976 * 17 15 13 20 20 H 1.48496 * 109.47502 * 330.00060 * 17 15 13 21 21 H 1.09006 * 109.46626 * 270.01958 * 1 2 3 22 22 H 1.08997 * 109.47767 * 30.01779 * 1 2 3 23 23 H 1.08997 * 109.46925 * 150.02479 * 1 2 3 24 24 H 1.07997 * 120.00435 * 359.97438 * 3 2 1 25 25 H 1.08001 * 119.99701 * 179.97438 * 4 3 2 26 26 H 1.07995 * 120.00047 * 180.32212 * 5 4 3 27 27 H 1.08000 * 119.99306 * 179.97438 * 6 5 4 28 28 H 1.09005 * 109.46873 * 30.02029 * 8 7 2 29 29 H 1.08998 * 109.47033 * 150.02519 * 8 7 2 30 30 H 1.09005 * 109.46916 * 299.99923 * 11 9 8 31 31 H 1.08998 * 109.47083 * 59.99375 * 11 9 8 32 32 H 1.09005 * 109.46914 * 299.99679 * 12 11 9 33 33 H 1.08998 * 109.47802 * 59.99571 * 12 11 9 34 34 H 0.96998 * 120.00181 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 0.0000 6 6 3.5807 -1.1968 0.0000 7 6 2.1981 -1.1969 0.0005 8 6 1.4448 -2.5020 0.0017 9 16 1.1424 -3.0242 1.7124 10 8 0.3048 -2.0742 2.3567 11 6 0.2406 -4.5850 1.5094 12 6 -0.0946 -5.1631 2.8857 13 6 -0.8433 -6.4601 2.7170 14 1 -1.0587 -6.8344 1.7272 15 6 -1.2531 -7.1689 3.8264 16 7 -1.9068 -8.3004 3.6792 17 14 -0.8797 -6.5218 5.5385 18 1 -1.9931 -5.6500 5.9919 19 1 -0.7307 -7.6627 6.4773 20 1 0.3814 -5.7383 5.5075 21 1 -0.3633 0.0004 1.0278 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6582 2.1327 -0.0004 25 1 4.1203 2.1328 -0.0010 26 1 5.3517 0.0002 0.0049 27 1 4.1208 -2.1321 0.0001 28 1 0.4923 -2.3722 -0.5122 29 1 2.0339 -3.2621 -0.5114 30 1 -0.6817 -4.4026 0.9578 31 1 0.8595 -5.2931 0.9583 32 1 0.8275 -5.3455 3.4376 33 1 -0.7136 -4.4549 3.4364 34 1 -2.1948 -8.7993 4.4596 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084256846.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:53 Heat of formation + Delta-G solvation = -27.747317 kcal Electronic energy + Delta-G solvation = -15767.465104 eV Core-core repulsion = 13177.441517 eV Total energy + Delta-G solvation = -2590.023587 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.51195 -35.23248 -33.70679 -33.38080 -32.14538 -31.24683 -27.69506 -26.54276 -25.50170 -22.16320 -21.17508 -20.46751 -17.30627 -16.78077 -16.45373 -15.80163 -15.12798 -15.07788 -14.32819 -14.17198 -13.91640 -13.41718 -13.16916 -12.90739 -12.88094 -12.63764 -12.21112 -12.15886 -11.70516 -11.56549 -11.06511 -11.04602 -10.93330 -10.66004 -10.22758 -9.97722 -9.65214 -9.33405 -8.79527 -8.59124 -8.48053 -7.71637 -6.09481 -4.08938 1.14525 1.33704 2.04305 3.06714 3.30331 3.37412 3.40466 3.74702 4.17234 4.41613 4.65537 4.75668 4.91056 4.96918 5.12861 5.23883 5.28320 5.53337 5.57000 5.64507 5.76804 5.83321 5.89349 5.96886 6.03538 6.23394 6.40595 6.43832 6.59845 6.62133 6.96133 7.06135 7.18177 7.68107 8.46876 8.93545 9.51654 11.03555 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.043908 B = 0.004556 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.544288 B = 6144.053829 C = 6164.760962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.120 4.120 4 C -0.124 4.124 5 C -0.126 4.126 6 C -0.113 4.113 7 C -0.059 4.059 8 C -0.419 4.419 9 S 1.217 4.783 10 O -0.842 6.842 11 C -0.411 4.411 12 C 0.004 3.996 13 C -0.519 4.519 14 H 0.073 0.927 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.876 3.124 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.262 1.262 21 H 0.086 0.914 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.096 0.904 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.027 0.973 33 H 0.018 0.982 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.433 15.537 -8.065 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.076 4.076 3 C -0.138 4.138 4 C -0.142 4.142 5 C -0.144 4.144 6 C -0.132 4.132 7 C -0.060 4.060 8 C -0.552 4.552 9 S 1.418 4.582 10 O -0.838 6.838 11 C -0.550 4.550 12 C -0.035 4.035 13 C -0.558 4.558 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.187 1.187 21 H 0.105 0.895 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.137 0.863 25 H 0.137 0.863 26 H 0.140 0.860 27 H 0.148 0.852 28 H 0.114 0.886 29 H 0.141 0.859 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.585 15.865 -7.144 22.075 hybrid contribution -1.911 0.398 -0.338 1.981 sum 11.675 16.263 -7.481 21.372 Atomic orbital electron populations 1.20955 0.91366 1.02032 1.03685 1.19818 0.96203 0.92742 0.98790 1.20984 0.94334 0.97250 1.01260 1.21101 0.94180 0.98093 1.00842 1.21088 0.99769 0.92428 1.01111 1.21067 0.93073 0.98616 1.00485 1.19036 0.93459 0.92655 1.00842 1.26883 1.05289 1.00839 1.22181 1.70539 1.14445 0.87815 0.85354 1.93084 1.71225 1.56889 1.62584 1.27465 1.08933 1.12290 1.06320 1.19235 0.97277 0.97056 0.89900 1.21036 1.35701 1.04051 0.95008 0.90881 1.25013 0.94440 0.94641 0.99240 1.69897 1.38720 1.14950 1.30397 0.86836 0.79782 0.78738 0.84405 1.20161 1.21065 1.18660 0.89510 0.91927 0.91839 0.86268 0.86273 0.85974 0.85221 0.88582 0.85885 0.90425 0.87151 0.95464 0.96414 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 9.37 36.01 0.34 -1.34 16 2 C -0.07 -1.00 5.88 -104.62 -0.62 -1.61 16 3 C -0.12 -1.40 9.70 -39.58 -0.38 -1.79 16 4 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 5 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 6 C -0.11 -1.20 9.70 -39.58 -0.38 -1.58 16 7 C -0.06 -0.75 5.14 -104.63 -0.54 -1.28 16 8 C -0.42 -5.15 5.64 36.00 0.20 -4.95 16 9 S 1.22 18.40 13.14 -107.50 -1.41 16.99 16 10 O -0.84 -17.36 17.24 -35.23 -0.61 -17.96 16 11 C -0.41 -7.63 5.86 37.16 0.22 -7.41 16 12 C 0.00 0.10 4.05 -27.89 -0.11 -0.02 16 13 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 14 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 17 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 21 H 0.09 1.36 7.47 -51.93 -0.39 0.97 16 22 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 23 H 0.06 0.85 5.95 -51.93 -0.31 0.55 16 24 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 25 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 26 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 27 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.10 1.25 5.95 -51.92 -0.31 0.95 16 29 H 0.12 1.14 8.09 -51.93 -0.42 0.72 16 30 H 0.08 1.53 8.14 -51.92 -0.42 1.10 16 31 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 33 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 298.26 15.07 4.49 4.49 Total: -1.00 -35.41 298.26 -8.66 -44.07 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -4.74 Total: -1.24 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: -2.50 Total: -36.48 kcal Atomic # 7 Polarization: -27.74 SS G_CDS: 0.77 Total: -26.97 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.61 Total: -17.96 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 16 Polarization: 18.40 SS G_CDS: -1.41 Total: 16.99 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.41 -8.66 -44.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084256846.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.319 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds