Wall clock time and date at job start Sun Mar 29 2020 22:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38255 * 119.99507 * 2 1 4 4 C 1.38217 * 119.99740 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00087 * 359.94716 * 4 3 2 6 6 C 1.38215 * 119.99734 * 0.05278 * 5 4 3 7 7 C 1.38212 * 120.00209 * 179.97438 * 2 1 3 8 8 C 1.50696 * 120.00198 * 359.97438 * 7 2 1 9 9 S 1.81404 * 109.47280 * 270.02641 * 8 7 2 10 10 O 1.42101 * 109.47063 * 63.60908 * 9 8 7 11 11 C 1.81399 * 103.00174 * 179.97438 * 9 8 7 12 12 C 1.52996 * 109.47220 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47165 * 180.02562 * 12 11 9 14 14 H 1.07996 * 119.99853 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00036 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99961 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99657 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47073 * 90.00550 * 17 15 13 19 19 H 1.48503 * 109.46935 * 209.99976 * 17 15 13 20 20 H 1.48496 * 109.47502 * 330.00060 * 17 15 13 21 21 H 1.09006 * 109.46626 * 270.01958 * 1 2 3 22 22 H 1.08997 * 109.47767 * 30.01779 * 1 2 3 23 23 H 1.08997 * 109.46925 * 150.02479 * 1 2 3 24 24 H 1.07997 * 120.00435 * 359.97438 * 3 2 1 25 25 H 1.08001 * 119.99701 * 179.97438 * 4 3 2 26 26 H 1.07995 * 120.00047 * 180.32212 * 5 4 3 27 27 H 1.08000 * 119.99306 * 179.97438 * 6 5 4 28 28 H 1.09005 * 109.46873 * 30.02029 * 8 7 2 29 29 H 1.08998 * 109.47033 * 150.02519 * 8 7 2 30 30 H 1.09005 * 109.46916 * 299.99923 * 11 9 8 31 31 H 1.08998 * 109.47083 * 59.99375 * 11 9 8 32 32 H 1.09005 * 109.46914 * 299.99679 * 12 11 9 33 33 H 1.08998 * 109.47802 * 59.99571 * 12 11 9 34 34 H 0.96998 * 120.00181 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 0.0000 6 6 3.5807 -1.1968 0.0000 7 6 2.1981 -1.1969 0.0005 8 6 1.4448 -2.5020 0.0017 9 16 1.1424 -3.0242 1.7124 10 8 0.3048 -2.0742 2.3567 11 6 0.2406 -4.5850 1.5094 12 6 -0.0946 -5.1631 2.8857 13 6 -0.8433 -6.4601 2.7170 14 1 -1.0587 -6.8344 1.7272 15 6 -1.2531 -7.1689 3.8264 16 7 -1.9068 -8.3004 3.6792 17 14 -0.8797 -6.5218 5.5385 18 1 -1.9931 -5.6500 5.9919 19 1 -0.7307 -7.6627 6.4773 20 1 0.3814 -5.7383 5.5075 21 1 -0.3633 0.0004 1.0278 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6582 2.1327 -0.0004 25 1 4.1203 2.1328 -0.0010 26 1 5.3517 0.0002 0.0049 27 1 4.1208 -2.1321 0.0001 28 1 0.4923 -2.3722 -0.5122 29 1 2.0339 -3.2621 -0.5114 30 1 -0.6817 -4.4026 0.9578 31 1 0.8595 -5.2931 0.9583 32 1 0.8275 -5.3455 3.4376 33 1 -0.7136 -4.4549 3.4364 34 1 -2.1948 -8.7993 4.4596 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084256846.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:53 Heat of formation + Delta-G solvation = -51.286465 kcal Electronic energy + Delta-G solvation = -15768.485838 eV Core-core repulsion = 13177.441517 eV Total energy + Delta-G solvation = -2591.044321 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.34377 -36.69982 -35.71232 -34.25994 -33.25361 -33.02473 -28.65141 -27.72977 -27.15989 -23.13924 -22.70364 -21.56890 -19.20874 -18.27088 -17.29225 -16.75131 -16.58135 -16.12320 -15.91513 -15.73687 -15.28125 -14.70791 -14.53909 -14.06448 -13.96909 -13.84630 -13.53848 -13.31795 -13.10560 -12.98083 -12.72806 -12.39972 -11.98589 -11.88408 -11.80841 -11.77384 -11.54994 -11.02066 -10.81524 -9.67149 -9.54520 -8.96512 -8.33403 -6.38338 0.17799 0.51678 0.92888 1.34244 1.35732 1.47347 1.82694 2.33065 2.84850 2.98858 3.01777 3.70601 3.90946 4.07858 4.09900 4.22850 4.35390 4.38918 4.42926 4.59177 4.75764 4.80096 4.83243 4.84354 4.90725 5.21782 5.28216 5.32020 5.32288 5.56984 5.60167 5.66273 5.74373 6.16963 6.23084 6.68537 7.26246 8.83009 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.043908 B = 0.004556 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.544288 B = 6144.053829 C = 6164.760962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C -0.135 4.135 4 C -0.124 4.124 5 C -0.126 4.126 6 C -0.113 4.113 7 C -0.084 4.084 8 C -0.406 4.406 9 S 1.278 4.722 10 O -0.900 6.900 11 C -0.420 4.420 12 C 0.000 4.000 13 C -0.531 4.531 14 H 0.036 0.964 15 C 0.007 3.993 16 N -0.948 5.948 17 Si 0.938 3.062 18 H -0.279 1.279 19 H -0.274 1.274 20 H -0.234 1.234 21 H 0.057 0.943 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.129 0.871 25 H 0.145 0.855 26 H 0.155 0.845 27 H 0.163 0.837 28 H 0.086 0.914 29 H 0.163 0.837 30 H 0.055 0.945 31 H 0.136 0.864 32 H 0.051 0.949 33 H -0.001 1.001 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.712 17.015 -8.170 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.105 4.105 3 C -0.153 4.153 4 C -0.142 4.142 5 C -0.144 4.144 6 C -0.132 4.132 7 C -0.085 4.085 8 C -0.542 4.542 9 S 1.481 4.519 10 O -0.896 6.896 11 C -0.557 4.557 12 C -0.038 4.038 13 C -0.570 4.570 14 H 0.054 0.946 15 C -0.190 4.190 16 N -0.589 5.589 17 Si 0.761 3.239 18 H -0.205 1.205 19 H -0.199 1.199 20 H -0.156 1.156 21 H 0.075 0.925 22 H 0.097 0.903 23 H 0.075 0.925 24 H 0.147 0.853 25 H 0.163 0.837 26 H 0.172 0.828 27 H 0.180 0.820 28 H 0.105 0.895 29 H 0.181 0.819 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.070 0.930 33 H 0.018 0.982 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.854 17.318 -7.230 25.224 hybrid contribution -2.867 0.034 -0.500 2.910 sum 13.987 17.352 -7.730 23.590 Atomic orbital electron populations 1.20889 0.92464 1.02585 1.01889 1.19999 0.95867 0.94103 1.00545 1.21225 0.95425 0.97132 1.01532 1.21501 0.93647 0.99728 0.99372 1.21546 1.01483 0.91860 0.99496 1.21495 0.92158 1.00552 0.98969 1.19184 0.94666 0.92036 1.02630 1.26741 1.05792 1.02370 1.19337 1.69796 1.10961 0.84709 0.86473 1.92984 1.71796 1.58523 1.66296 1.27521 1.09151 1.15681 1.03382 1.19183 0.97214 0.94347 0.93105 1.21423 1.36061 1.05994 0.93539 0.94554 1.25980 0.94282 0.94795 1.03956 1.70042 1.40345 1.16604 1.31866 0.85837 0.80639 0.78605 0.78836 1.20529 1.19903 1.15638 0.92463 0.90251 0.92522 0.85298 0.83703 0.82783 0.81991 0.89536 0.81911 0.92596 0.84582 0.93043 0.98234 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.35 9.37 71.24 0.67 -2.68 16 2 C -0.10 -2.68 5.88 -19.87 -0.12 -2.80 16 3 C -0.14 -2.92 9.70 22.27 0.22 -2.70 16 4 C -0.12 -2.12 10.05 22.27 0.22 -1.89 16 5 C -0.13 -1.93 10.05 22.27 0.22 -1.70 16 6 C -0.11 -1.92 9.70 22.27 0.22 -1.71 16 7 C -0.08 -1.93 5.14 -19.87 -0.10 -2.03 16 8 C -0.41 -9.10 5.64 71.23 0.40 -8.70 16 9 S 1.28 36.88 13.14 -56.49 -0.74 36.14 16 10 O -0.90 -37.27 17.24 -148.98 -2.57 -39.84 16 11 C -0.42 -15.44 5.86 71.98 0.42 -15.02 16 12 C 0.00 0.00 4.05 29.85 0.12 0.12 16 13 C -0.53 -31.02 9.66 25.60 0.25 -30.77 16 14 H 0.04 2.31 7.99 -2.91 -0.02 2.28 16 15 C 0.01 0.43 5.47 84.66 0.46 0.89 16 16 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 17 Si 0.94 44.68 27.47 68.60 1.88 46.56 16 18 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.23 -9.97 6.54 99.48 0.65 -9.32 16 21 H 0.06 1.89 7.47 -2.38 -0.02 1.87 16 22 H 0.08 1.79 8.09 -2.39 -0.02 1.77 16 23 H 0.06 1.57 5.95 -2.39 -0.01 1.56 16 24 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 25 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 26 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 27 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 28 H 0.09 2.18 5.95 -2.39 -0.01 2.16 16 29 H 0.16 2.34 8.09 -2.39 -0.02 2.32 16 30 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.14 4.17 8.14 -2.39 -0.02 4.15 16 32 H 0.05 2.18 7.20 -2.38 -0.02 2.16 16 33 H 0.00 -0.04 7.57 -2.39 -0.02 -0.05 16 34 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -80.08 298.26 2.87 -77.21 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 1.02 Total: 8.56 kcal Atomic # 6 Polarization: -71.97 SS G_CDS: 2.98 Total: -68.99 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.30 Total: -59.64 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -2.57 Total: -39.84 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Atomic # 16 Polarization: 36.88 SS G_CDS: -0.74 Total: 36.14 kcal Total: -80.08 2.87 -77.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084256846.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.923 kcal (2) G-P(sol) polarization free energy of solvation -80.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds