Wall clock time and date at job start Sun Mar 29 2020 22:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 119.99755 * 2 1 4 4 C 1.38216 * 120.00037 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99744 * 359.96154 * 4 3 2 6 6 C 1.38212 * 120.00300 * 359.97134 * 5 4 3 7 7 C 1.38208 * 120.00186 * 180.17630 * 2 1 3 8 8 C 1.50698 * 120.00333 * 0.03695 * 7 2 1 9 9 S 1.81402 * 109.47086 * 270.19369 * 8 7 2 10 10 O 1.42097 * 109.47316 * 296.38691 * 9 8 7 11 11 C 1.81404 * 102.99873 * 179.97438 * 9 8 7 12 12 C 1.53003 * 109.46723 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.46631 * 180.02562 * 12 11 9 14 14 H 1.07996 * 120.00243 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99795 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00173 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99932 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46958 * 60.00162 * 17 15 13 19 19 H 1.48496 * 109.47180 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47366 * 300.00276 * 17 15 13 21 21 H 1.09005 * 109.47388 * 90.00327 * 1 2 3 22 22 H 1.09003 * 109.47096 * 209.99502 * 1 2 3 23 23 H 1.08998 * 109.47316 * 329.99372 * 1 2 3 24 24 H 1.08002 * 120.00247 * 0.02562 * 3 2 1 25 25 H 1.08005 * 120.00025 * 179.97438 * 4 3 2 26 26 H 1.07999 * 119.99759 * 179.97438 * 5 4 3 27 27 H 1.08002 * 119.99812 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.47001 * 30.19228 * 8 7 2 29 29 H 1.08998 * 109.47342 * 150.19242 * 8 7 2 30 30 H 1.08993 * 109.47350 * 299.99879 * 11 9 8 31 31 H 1.08998 * 109.46932 * 60.00419 * 11 9 8 32 32 H 1.09004 * 109.47467 * 299.99734 * 12 11 9 33 33 H 1.08998 * 109.47148 * 60.00461 * 12 11 9 34 34 H 0.96997 * 120.00014 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2716 0.0001 -0.0003 6 6 3.5807 -1.1969 0.0011 7 6 2.1981 -1.1969 -0.0037 8 6 1.4447 -2.5020 -0.0085 9 16 1.1364 -3.0286 1.6998 10 8 2.3753 -3.2803 2.3487 11 6 0.2354 -4.5890 1.4895 12 6 -0.1046 -5.1706 2.8632 13 6 -0.8526 -6.4671 2.6885 14 1 -1.0640 -6.8393 1.6969 15 6 -1.2663 -7.1788 3.7946 16 7 -1.0085 -6.7259 5.0021 17 14 -2.1941 -8.7856 3.5781 18 1 -1.3483 -9.7483 2.8278 19 1 -2.5230 -9.3508 4.9113 20 1 -3.4481 -8.5353 2.8230 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 1.6582 2.1327 0.0004 25 1 4.1203 2.1328 -0.0010 26 1 5.3516 0.0002 -0.0011 27 1 4.1207 -2.1322 0.0018 28 1 0.4941 -2.3709 -0.5254 29 1 2.0356 -3.2608 -0.5216 30 1 -0.6850 -4.4052 0.9353 31 1 0.8562 -5.2956 0.9389 32 1 0.8155 -5.3543 3.4179 33 1 -0.7257 -4.4637 3.4134 34 1 -1.2999 -7.2264 5.7802 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084256848.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:55 Heat of formation + Delta-G solvation = -56.815944 kcal Electronic energy + Delta-G solvation = -15663.063560 eV Core-core repulsion = 13071.779462 eV Total energy + Delta-G solvation = -2591.284097 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.35488 -36.77515 -35.74041 -34.25754 -32.99333 -32.88583 -28.61729 -27.50965 -27.05267 -23.42263 -22.84653 -21.58264 -18.79903 -18.30275 -17.31186 -16.69369 -16.58759 -16.30347 -15.98203 -15.64453 -15.22808 -14.55566 -14.28257 -14.10209 -13.99271 -13.81873 -13.45603 -13.05868 -12.87504 -12.82440 -12.70498 -12.62457 -12.01808 -11.96040 -11.87578 -11.80992 -11.53059 -10.98391 -10.59815 -9.74784 -9.53135 -8.99731 -8.21779 -6.35631 0.13364 0.47939 0.89877 1.39724 1.43100 1.51297 1.81885 2.39925 2.83254 2.92643 3.10236 3.70462 3.89058 4.09927 4.20574 4.24230 4.28216 4.46065 4.53965 4.65204 4.73667 4.93957 4.99842 5.02884 5.06107 5.18463 5.40556 5.48240 5.49649 5.57852 5.61223 5.73941 5.75616 6.14682 6.16292 6.78982 7.33930 8.89155 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.049814 B = 0.004214 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.951195 B = 6643.378368 C = 6828.448946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.082 4.082 3 C -0.122 4.122 4 C -0.122 4.122 5 C -0.138 4.138 6 C -0.140 4.140 7 C -0.084 4.084 8 C -0.401 4.401 9 S 1.267 4.733 10 O -0.915 6.915 11 C -0.419 4.419 12 C 0.036 3.964 13 C -0.544 4.544 14 H 0.066 0.934 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.969 3.031 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.256 1.256 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.156 0.844 25 H 0.149 0.851 26 H 0.132 0.868 27 H 0.097 0.903 28 H 0.165 0.835 29 H 0.083 0.917 30 H 0.144 0.856 31 H 0.059 0.941 32 H -0.027 1.027 33 H 0.025 0.975 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 18.000 -13.036 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.140 4.140 5 C -0.156 4.156 6 C -0.160 4.160 7 C -0.086 4.086 8 C -0.537 4.537 9 S 1.471 4.529 10 O -0.911 6.911 11 C -0.557 4.557 12 C -0.002 4.002 13 C -0.583 4.583 14 H 0.084 0.916 15 C -0.200 4.200 16 N -0.573 5.573 17 Si 0.793 3.207 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.181 1.181 21 H 0.108 0.892 22 H 0.099 0.901 23 H 0.110 0.890 24 H 0.173 0.827 25 H 0.167 0.833 26 H 0.150 0.850 27 H 0.116 0.884 28 H 0.183 0.817 29 H 0.102 0.898 30 H 0.162 0.838 31 H 0.078 0.922 32 H -0.009 1.009 33 H 0.044 0.956 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.091 18.382 -11.998 21.978 hybrid contribution 1.461 -2.893 -0.771 3.331 sum 2.552 15.489 -12.769 20.235 Atomic orbital electron populations 1.21098 0.88480 1.04925 1.04150 1.20180 0.98113 0.91616 0.98475 1.21459 0.94301 0.98365 0.99850 1.21512 0.95041 0.98262 0.99219 1.21322 1.00703 0.92469 1.01133 1.21203 0.94675 0.98565 1.01524 1.19159 0.93065 0.93620 1.02720 1.26664 1.08188 0.99821 1.19051 1.69564 0.97456 0.99344 0.86563 1.92984 1.46769 1.84817 1.66547 1.27560 1.10082 1.13957 1.04087 1.18652 0.94761 0.96225 0.90610 1.21625 1.36296 1.07170 0.93210 0.91605 1.26057 0.97088 1.02024 0.94806 1.70095 1.47654 1.40937 0.98608 0.85442 0.79278 0.78484 0.77497 1.19896 1.20779 1.18070 0.89197 0.90075 0.89030 0.82660 0.83348 0.85048 0.88429 0.81716 0.89844 0.83834 0.92228 1.00885 0.95634 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.19 71.24 0.65 -1.03 16 2 C -0.08 -1.65 5.88 -19.87 -0.12 -1.77 16 3 C -0.12 -2.15 9.70 22.27 0.22 -1.93 16 4 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 5 C -0.14 -3.27 10.05 22.27 0.22 -3.05 16 6 C -0.14 -4.05 9.70 22.27 0.22 -3.84 16 7 C -0.08 -2.20 5.14 -19.87 -0.10 -2.30 16 8 C -0.40 -10.10 5.31 71.24 0.38 -9.72 16 9 S 1.27 42.45 12.76 -56.49 -0.72 41.72 16 10 O -0.92 -44.26 18.14 -148.98 -2.70 -46.96 16 11 C -0.42 -16.53 5.86 71.98 0.42 -16.11 16 12 C 0.04 1.91 4.98 29.85 0.15 2.06 16 13 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 14 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 15 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 16 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 17 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 21 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 22 H 0.08 0.97 6.37 -2.39 -0.02 0.95 16 23 H 0.09 0.84 8.09 -2.39 -0.02 0.82 16 24 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 25 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 26 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 27 H 0.10 3.08 8.06 -2.91 -0.02 3.06 16 28 H 0.17 2.76 6.72 -2.39 -0.02 2.74 16 29 H 0.08 2.28 8.09 -2.39 -0.02 2.26 16 30 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 31 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 32 H -0.03 -1.71 8.14 -2.38 -0.02 -1.73 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -81.68 303.72 2.91 -78.77 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.07 Total: 7.86 kcal Atomic # 6 Polarization: -73.27 SS G_CDS: 2.96 Total: -70.31 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.28 Total: -57.28 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -2.70 Total: -46.96 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 42.45 SS G_CDS: -0.72 Total: 41.72 kcal Total: -81.68 2.91 -78.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084256848.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.954 kcal (2) G-P(sol) polarization free energy of solvation -81.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds