Wall clock time and date at job start Sun Mar 29 2020 22:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00254 * 2 1 4 4 C 1.38212 * 120.00319 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.26336 * 4 3 2 6 6 S 1.76200 * 119.99586 * 179.72257 * 5 4 3 7 7 O 1.42095 * 102.99983 * 336.13993 * 6 5 4 8 8 C 1.81392 * 103.00249 * 89.99332 * 6 5 4 9 9 C 1.53004 * 109.47285 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47480 * 179.97438 * 9 8 6 11 11 H 1.08006 * 119.99932 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00345 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99833 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00128 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47098 * 60.00291 * 14 12 10 16 16 H 1.48494 * 109.47033 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47161 * 300.00206 * 14 12 10 18 18 C 1.38208 * 120.00088 * 359.47803 * 5 4 3 19 19 C 1.38216 * 120.00020 * 180.02562 * 2 1 3 20 20 C 1.50706 * 119.99769 * 359.97438 * 19 2 1 21 21 H 1.08998 * 109.46845 * 89.99859 * 1 2 3 22 22 H 1.08996 * 109.47280 * 210.00020 * 1 2 3 23 23 H 1.08999 * 109.46887 * 329.99914 * 1 2 3 24 24 H 1.07999 * 119.99740 * 0.02562 * 3 2 1 25 25 H 1.08002 * 119.99812 * 179.97438 * 4 3 2 26 26 H 1.08999 * 109.47645 * 299.99853 * 8 6 5 27 27 H 1.09007 * 109.46871 * 60.00082 * 8 6 5 28 28 H 1.08995 * 109.47349 * 300.00311 * 9 8 6 29 29 H 1.09007 * 109.46550 * 60.00557 * 9 8 6 30 30 H 0.96998 * 119.99720 * 180.02562 * 13 12 10 31 31 H 1.07999 * 119.99941 * 180.23499 * 18 5 4 32 32 H 1.09004 * 109.46442 * 90.00601 * 20 19 2 33 33 H 1.09000 * 109.46849 * 210.00007 * 20 19 2 34 34 H 1.08993 * 109.47102 * 330.00304 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0066 6 16 6.0337 0.0000 -0.0146 7 8 6.3507 1.2675 -0.5731 8 6 6.4499 -0.0040 1.7509 9 6 7.9710 -0.0050 1.9163 10 6 8.3168 -0.0077 3.3831 11 1 7.5303 -0.0091 4.1233 12 6 9.6371 -0.0085 3.7801 13 7 10.5948 -0.0063 2.8787 14 14 10.0658 -0.0126 5.5982 15 1 9.4981 -1.2266 6.2379 16 1 11.5420 -0.0134 5.7588 17 1 9.4978 1.1984 6.2434 18 6 3.5807 -1.1970 -0.0012 19 6 2.1981 -1.1970 -0.0005 20 6 1.4445 -2.5021 -0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6583 2.1326 0.0004 25 1 4.1204 2.1327 -0.0010 26 1 6.0332 0.8848 2.2245 27 1 6.0331 -0.8952 2.2204 28 1 8.3874 -0.8941 1.4428 29 1 8.3880 0.8860 1.4468 30 1 11.5237 -0.0072 3.1581 31 1 4.1206 -2.1323 -0.0021 32 1 1.2626 -2.8165 -1.0283 33 1 2.0338 -3.2618 0.5129 34 1 0.4923 -2.3718 0.5136 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084259048.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:57 Heat of formation + Delta-G solvation = -35.339898 kcal Electronic energy + Delta-G solvation = -15641.799701 eV Core-core repulsion = 13051.446874 eV Total energy + Delta-G solvation = -2590.352826 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.44658 -35.15772 -33.64368 -33.39358 -32.17824 -30.83112 -27.73005 -26.51963 -25.23144 -22.22796 -21.46773 -20.70388 -17.38208 -16.68448 -15.96034 -15.77694 -14.94377 -14.59042 -14.43564 -14.01874 -13.74382 -13.62790 -13.12036 -12.95633 -12.77222 -12.38600 -12.10041 -11.85890 -11.78128 -11.47496 -11.19813 -10.98697 -10.88961 -10.73230 -10.08967 -10.06506 -9.47105 -9.12549 -8.84194 -8.64065 -8.39614 -7.72997 -6.02913 -4.06720 1.05466 1.41385 2.34369 3.25470 3.32048 3.36597 3.39229 3.73993 4.40347 4.46116 4.70014 4.78078 4.92720 5.03944 5.29810 5.32083 5.33114 5.43413 5.50989 5.66836 5.67517 5.74132 6.02966 6.04633 6.11766 6.23208 6.36476 6.44183 6.56346 6.85591 7.01489 7.50966 7.62268 7.92383 8.34641 8.97549 9.57237 11.07713 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.032492 B = 0.004565 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.549721 B = 6132.483774 C = 6428.456583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.065 4.065 3 C -0.135 4.135 4 C -0.058 4.058 5 C -0.450 4.450 6 S 1.298 4.702 7 O -0.862 6.862 8 C -0.419 4.419 9 C 0.038 3.962 10 C -0.518 4.518 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.278 1.278 18 C -0.044 4.044 19 C -0.109 4.109 20 C -0.115 4.115 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.119 0.881 25 H 0.125 0.875 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.029 0.971 29 H 0.022 0.978 30 H 0.263 0.737 31 H 0.135 0.865 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.354 -6.237 -7.048 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.065 4.065 3 C -0.154 4.154 4 C -0.077 4.077 5 C -0.545 4.545 6 S 1.498 4.502 7 O -0.857 6.857 8 C -0.558 4.558 9 C 0.000 4.000 10 C -0.558 4.558 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.723 3.277 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.063 4.063 19 C -0.110 4.110 20 C -0.171 4.171 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.137 0.863 25 H 0.143 0.857 26 H 0.092 0.908 27 H 0.121 0.879 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.588 -6.208 -7.892 20.252 hybrid contribution -0.675 1.947 2.212 3.023 sum -18.263 -4.262 -5.680 19.595 Atomic orbital electron populations 1.20898 0.91417 1.02891 1.02340 1.19866 0.95802 0.92885 0.97932 1.21077 0.94364 0.97410 1.02589 1.21132 0.94197 0.97930 0.94397 1.28119 1.20656 0.96663 1.09056 1.69251 0.80397 1.09762 0.90780 1.93052 1.77716 1.44632 1.70325 1.27695 1.07126 1.06105 1.14845 1.18793 0.85020 0.97996 0.98215 1.21116 0.91824 1.51206 0.91607 0.92581 1.25031 0.96468 0.95182 0.97718 1.69945 0.99798 1.50330 1.33184 0.86607 0.77238 0.78636 0.85237 1.20109 1.21156 1.20318 1.20739 0.93130 0.96884 0.95509 1.19846 0.94052 0.94815 1.02269 1.20839 1.00007 0.94021 1.02260 0.91052 0.90987 0.91657 0.86255 0.85710 0.90843 0.87905 0.95252 0.96000 0.92738 0.84682 0.91244 0.91256 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.60 36.01 0.35 -0.67 16 2 C -0.06 -0.77 5.88 -104.62 -0.62 -1.39 16 3 C -0.14 -1.85 9.70 -39.58 -0.38 -2.23 16 4 C -0.06 -0.94 9.44 -39.58 -0.37 -1.31 16 5 C -0.45 -6.93 5.61 -39.58 -0.22 -7.15 16 6 S 1.30 21.95 13.55 -107.50 -1.46 20.50 16 7 O -0.86 -19.68 16.90 -35.23 -0.60 -20.27 16 8 C -0.42 -8.54 5.82 37.16 0.22 -8.32 16 9 C 0.04 0.99 4.98 -27.88 -0.14 0.85 16 10 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 11 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 14 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C -0.04 -0.54 9.41 -39.59 -0.37 -0.92 16 19 C -0.11 -1.26 5.88 -104.62 -0.62 -1.88 16 20 C -0.11 -0.93 9.60 36.01 0.35 -0.59 16 21 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.07 0.52 5.95 -51.93 -0.31 0.21 16 23 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 24 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 25 H 0.12 2.22 7.46 -52.49 -0.39 1.83 16 26 H 0.07 1.61 8.14 -51.92 -0.42 1.18 16 27 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.02 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.07 0.48 5.95 -51.93 -0.31 0.17 16 LS Contribution 301.64 15.07 4.55 4.55 Total: -1.00 -36.07 301.64 -8.79 -44.85 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -4.77 Total: -3.12 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: -2.22 Total: -37.10 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.74 Total: -26.08 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.60 Total: -20.27 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 21.95 SS G_CDS: -1.46 Total: 20.50 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -36.07 -8.79 -44.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084259048.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.514 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds