Wall clock time and date at job start Sun Mar 29 2020 22:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38263 * 119.99870 * 2 1 4 4 C 1.38217 * 120.00248 * 180.02562 * 3 2 1 5 5 C 1.38259 * 119.99617 * 359.97438 * 4 3 2 6 6 S 1.76197 * 119.99904 * 179.97438 * 5 4 3 7 7 O 1.42105 * 102.99930 * 203.85627 * 6 5 4 8 8 C 1.81394 * 102.99885 * 90.00462 * 6 5 4 9 9 C 1.53003 * 109.47049 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46907 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00086 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99900 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99665 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00264 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47177 * 59.99437 * 14 12 10 16 16 H 1.48499 * 109.47096 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46718 * 299.99457 * 14 12 10 18 18 C 1.38221 * 119.99920 * 0.25838 * 5 4 3 19 19 C 1.38214 * 120.00170 * 180.02562 * 2 1 3 20 20 C 1.50698 * 119.99839 * 0.02562 * 19 2 1 21 21 H 1.08996 * 109.47165 * 89.99974 * 1 2 3 22 22 H 1.08999 * 109.47529 * 210.00080 * 1 2 3 23 23 H 1.09006 * 109.47582 * 330.00104 * 1 2 3 24 24 H 1.07997 * 119.99868 * 359.97438 * 3 2 1 25 25 H 1.07995 * 120.00278 * 179.97438 * 4 3 2 26 26 H 1.08997 * 109.46959 * 299.99709 * 8 6 5 27 27 H 1.08997 * 109.47662 * 59.99827 * 8 6 5 28 28 H 1.08997 * 109.46791 * 299.99553 * 9 8 6 29 29 H 1.08995 * 109.47237 * 60.00084 * 9 8 6 30 30 H 0.97003 * 119.99792 * 180.02562 * 13 12 10 31 31 H 1.08005 * 119.99806 * 179.72155 * 18 5 4 32 32 H 1.09004 * 109.46997 * 89.99793 * 20 19 2 33 33 H 1.08997 * 109.46953 * 210.00076 * 20 19 2 34 34 H 1.08997 * 109.46858 * 329.99985 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0001 -0.0005 6 16 6.0337 0.0002 -0.0019 7 8 6.3529 -1.2664 -0.5616 8 6 6.4430 0.0008 1.7652 9 6 7.9635 0.0016 1.9365 10 6 8.3035 0.0015 3.4047 11 1 7.5143 0.0014 4.1418 12 6 9.6224 0.0026 3.8068 13 7 10.5835 0.0032 2.9091 14 14 10.0440 0.0032 5.6266 15 1 9.4747 -1.2096 6.2670 16 1 11.5197 0.0038 5.7928 17 1 9.4729 1.2155 6.2666 18 6 3.5806 -1.1969 -0.0054 19 6 2.1980 -1.1969 -0.0005 20 6 1.4445 -2.5020 -0.0017 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6582 2.1327 -0.0004 25 1 4.1203 2.1328 -0.0010 26 1 6.0245 0.8910 2.2348 27 1 6.0245 -0.8889 2.2356 28 1 8.3823 -0.8884 1.4669 29 1 8.3816 0.8916 1.4664 30 1 11.5114 0.0036 3.1920 31 1 4.1206 -2.1322 -0.0099 32 1 1.2633 -2.8160 -1.0297 33 1 2.0334 -3.2620 0.5119 34 1 0.4920 -2.3720 0.5118 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084259051.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:59 Heat of formation + Delta-G solvation = -59.228633 kcal Electronic energy + Delta-G solvation = -15659.803333 eV Core-core repulsion = 13068.414613 eV Total energy + Delta-G solvation = -2591.388720 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.42395 -36.82254 -35.73780 -34.37676 -33.07756 -32.86407 -28.59641 -27.54449 -27.20895 -23.36378 -23.11128 -21.91345 -18.78969 -18.54723 -17.36297 -16.81589 -16.55391 -16.04142 -15.71047 -15.51141 -15.15026 -14.84208 -14.33877 -14.04236 -13.78393 -13.67885 -13.49621 -13.19251 -12.89779 -12.86192 -12.79780 -12.60247 -12.35286 -11.99072 -11.91661 -11.86446 -11.51937 -10.84579 -10.59402 -9.92043 -9.66916 -9.23779 -8.21718 -6.34927 -0.05422 0.40145 0.99774 1.39024 1.42226 1.50521 1.90298 2.39911 2.65576 2.98852 3.10123 3.79928 3.91929 4.03790 4.21593 4.29029 4.38293 4.47041 4.57533 4.62551 4.77678 4.80200 4.92767 4.94989 4.99000 5.13213 5.26621 5.36931 5.40447 5.40672 5.50838 5.63190 5.75748 6.05980 6.17893 6.78399 7.34097 8.88938 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.033293 B = 0.004536 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.809574 B = 6171.611192 C = 6370.565159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.062 4.062 3 C -0.135 4.135 4 C -0.044 4.044 5 C -0.472 4.472 6 S 1.370 4.630 7 O -0.928 6.928 8 C -0.422 4.422 9 C 0.037 3.963 10 C -0.544 4.544 11 H 0.059 0.941 12 C 0.001 3.999 13 N -0.931 5.931 14 Si 0.967 3.033 15 H -0.276 1.276 16 H -0.280 1.280 17 H -0.258 1.258 18 C -0.087 4.087 19 C -0.122 4.122 20 C -0.116 4.116 21 H 0.086 0.914 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.165 0.835 25 H 0.177 0.823 26 H 0.133 0.867 27 H 0.048 0.952 28 H -0.023 1.023 29 H 0.032 0.968 30 H 0.266 0.734 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.183 6.510 -6.388 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.062 4.062 3 C -0.154 4.154 4 C -0.063 4.063 5 C -0.570 4.570 6 S 1.572 4.428 7 O -0.924 6.924 8 C -0.559 4.559 9 C -0.001 4.001 10 C -0.583 4.583 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.571 5.571 14 Si 0.791 3.209 15 H -0.201 1.201 16 H -0.205 1.205 17 H -0.182 1.182 18 C -0.106 4.106 19 C -0.123 4.123 20 C -0.173 4.173 21 H 0.105 0.895 22 H 0.095 0.905 23 H 0.105 0.895 24 H 0.182 0.818 25 H 0.194 0.806 26 H 0.151 0.849 27 H 0.067 0.933 28 H -0.005 1.005 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.384 6.476 -7.211 22.571 hybrid contribution 0.023 -2.476 1.898 3.120 sum -20.361 4.000 -5.313 21.420 Atomic orbital electron populations 1.20993 0.88522 1.04260 1.03663 1.20400 0.97956 0.92258 0.95599 1.21626 0.94242 0.98726 1.00777 1.21361 0.94846 0.96829 0.93251 1.27692 1.18722 0.98091 1.12495 1.68375 0.81138 1.06806 0.86489 1.92921 1.80601 1.47554 1.71282 1.27656 1.03346 1.06290 1.18580 1.18667 0.88702 0.95882 0.96894 1.21583 0.92419 1.51312 0.93000 0.92227 1.26002 0.96304 0.94507 1.02908 1.70080 1.00183 1.51100 1.35692 0.85474 0.77189 0.79181 0.79046 1.20093 1.20499 1.18247 1.21001 0.95117 0.97119 0.97390 1.20137 0.92858 0.97154 1.02140 1.20901 1.00494 0.92823 1.03034 0.89540 0.90498 0.89493 0.81765 0.80615 0.84918 0.93274 1.00511 0.94950 0.92481 0.89212 0.90353 0.92887 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.60 71.23 0.68 -0.78 16 2 C -0.06 -1.27 5.88 -19.87 -0.12 -1.39 16 3 C -0.14 -2.49 9.70 22.27 0.22 -2.27 16 4 C -0.04 -0.94 9.75 22.27 0.22 -0.72 16 5 C -0.47 -14.34 5.61 22.27 0.12 -14.21 16 6 S 1.37 47.76 13.55 -56.49 -0.77 46.99 16 7 O -0.93 -45.12 16.89 -148.98 -2.52 -47.64 16 8 C -0.42 -17.73 5.82 71.98 0.42 -17.31 16 9 C 0.04 1.99 4.98 29.85 0.15 2.14 16 10 C -0.54 -31.69 9.11 25.60 0.23 -31.45 16 11 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 12 C 0.00 0.07 5.46 84.65 0.46 0.53 16 13 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 14 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 18 C -0.09 -2.94 9.10 22.27 0.20 -2.74 16 19 C -0.12 -3.22 5.88 -19.87 -0.12 -3.34 16 20 C -0.12 -2.43 9.60 71.24 0.68 -1.74 16 21 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.08 0.87 5.95 -2.39 -0.01 0.86 16 23 H 0.09 0.78 8.09 -2.38 -0.02 0.76 16 24 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 25 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 26 H 0.13 4.66 8.14 -2.39 -0.02 4.64 16 27 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 28 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 29 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.27 15.32 8.31 -92.71 -0.77 14.54 16 31 H 0.09 3.56 7.45 -2.91 -0.02 3.54 16 32 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.05 1.21 8.09 -2.39 -0.02 1.19 16 34 H 0.09 1.45 5.95 -2.39 -0.01 1.44 16 Total: -1.00 -82.59 301.63 3.26 -79.33 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.08 Total: 4.83 kcal Atomic # 6 Polarization: -76.44 SS G_CDS: 3.16 Total: -73.29 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.28 Total: -56.92 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -2.52 Total: -47.64 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 47.76 SS G_CDS: -0.77 Total: 46.99 kcal Total: -82.59 3.26 -79.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084259051.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.100 kcal (2) G-P(sol) polarization free energy of solvation -82.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds