Wall clock time and date at job start Sun Mar 29 2020 22:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 119.99963 * 2 1 4 4 C 1.38217 * 120.00087 * 180.32327 * 3 2 1 5 5 C 1.38255 * 120.00132 * 359.92319 * 4 3 2 6 6 C 1.50694 * 120.00087 * 180.02562 * 5 4 3 7 7 C 1.38220 * 119.99697 * 0.07194 * 5 4 3 8 8 S 1.76199 * 119.99871 * 179.97438 * 7 5 4 9 9 O 1.42097 * 102.99747 * 161.12538 * 8 7 5 10 10 C 1.81407 * 103.00069 * 274.97848 * 8 7 5 11 11 C 1.52993 * 109.46882 * 180.02562 * 10 8 7 12 12 C 1.50708 * 109.46875 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99942 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99882 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00306 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99896 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47317 * 59.99926 * 16 14 12 18 18 H 1.48501 * 109.47237 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46642 * 299.99709 * 16 14 12 20 20 C 1.38215 * 120.00248 * 180.27050 * 2 1 3 21 21 H 1.09000 * 109.47344 * 269.72903 * 1 2 3 22 22 H 1.09003 * 109.46871 * 29.72833 * 1 2 3 23 23 H 1.09006 * 109.46644 * 149.72417 * 1 2 3 24 24 H 1.08001 * 120.00211 * 0.27430 * 3 2 1 25 25 H 1.08005 * 120.00081 * 179.97438 * 4 3 2 26 26 H 1.09001 * 109.47294 * 270.02134 * 6 5 4 27 27 H 1.09001 * 109.47215 * 30.02474 * 6 5 4 28 28 H 1.09005 * 109.46889 * 150.02650 * 6 5 4 29 29 H 1.08999 * 109.46697 * 299.99890 * 10 8 7 30 30 H 1.08998 * 109.47092 * 59.99997 * 10 8 7 31 31 H 1.08999 * 109.47280 * 299.99429 * 11 10 8 32 32 H 1.08998 * 109.47345 * 60.00047 * 11 10 8 33 33 H 0.97002 * 120.00490 * 180.02562 * 15 14 12 34 34 H 1.08000 * 119.99306 * 359.72702 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 -0.0068 5 6 4.2718 0.0001 -0.0119 6 6 5.7787 0.0001 -0.0187 7 6 3.5807 -1.1969 -0.0118 8 16 4.4617 -2.7228 -0.0190 9 8 3.4888 -3.6557 0.4308 10 6 4.7912 -2.9954 -1.7820 11 6 5.5630 -4.3044 -1.9600 12 6 5.8373 -4.5305 -3.4246 13 1 5.4956 -3.8122 -4.1552 14 6 6.5252 -5.6539 -3.8316 15 7 6.9425 -6.5278 -2.9419 16 14 6.8658 -5.9339 -5.6469 17 1 7.6730 -4.8066 -6.1787 18 1 7.6149 -7.2044 -5.8198 19 1 5.5798 -6.0136 -6.3852 20 6 2.1981 -1.1969 -0.0057 21 1 -0.3634 -0.0049 1.0276 22 1 -0.3633 0.8924 -0.5096 23 1 -0.3633 -0.8876 -0.5182 24 1 1.6583 2.1327 0.0045 25 1 4.1205 2.1327 -0.0072 26 1 6.1374 0.0023 -1.0480 27 1 6.1443 0.8890 0.4954 28 1 6.1443 -0.8910 0.4916 29 1 3.8469 -3.0543 -2.3232 30 1 5.3832 -2.1680 -2.1731 31 1 6.5073 -4.2459 -1.4188 32 1 4.9706 -5.1316 -1.5690 33 1 7.4269 -7.3180 -3.2282 34 1 1.6581 -2.1322 -0.0056 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084259271.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:58 Heat of formation + Delta-G solvation = -37.274432 kcal Electronic energy + Delta-G solvation = -15876.766155 eV Core-core repulsion = 13286.329441 eV Total energy + Delta-G solvation = -2590.436714 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.32494 -35.20971 -33.86598 -33.63868 -30.98725 -30.81847 -29.27109 -25.28658 -24.87010 -23.00149 -21.37649 -20.75234 -17.16132 -16.60425 -15.93177 -15.71553 -15.05976 -14.59393 -14.27655 -13.96848 -13.81398 -13.59871 -13.26980 -12.81633 -12.69432 -12.34332 -11.97890 -11.74176 -11.60008 -11.53857 -11.27114 -11.02472 -10.90921 -10.74253 -10.09956 -10.07804 -9.49212 -9.17567 -8.98423 -8.45162 -8.40394 -7.72571 -6.03585 -4.07521 1.06898 1.40361 2.34043 3.24450 3.31507 3.36190 3.38724 3.76214 4.36537 4.44646 4.79497 4.81853 5.00175 5.16973 5.25042 5.31420 5.46746 5.51240 5.61167 5.67981 5.77656 5.90725 6.02135 6.03255 6.20317 6.27049 6.35185 6.51155 6.55230 6.83913 7.02550 7.49727 7.61093 7.91539 8.33575 8.96683 9.56533 11.07013 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.029861 B = 0.004997 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.448331 B = 5602.113507 C = 5661.936134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.113 4.113 3 C -0.092 4.092 4 C -0.138 4.138 5 C -0.017 4.017 6 C -0.135 4.135 7 C -0.449 4.449 8 S 1.295 4.705 9 O -0.864 6.864 10 C -0.417 4.417 11 C 0.039 3.961 12 C -0.518 4.518 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.278 1.278 20 C -0.052 4.052 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.120 0.880 25 H 0.124 0.876 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.029 0.971 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 16.610 7.488 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.114 4.114 3 C -0.111 4.111 4 C -0.156 4.156 5 C -0.019 4.019 6 C -0.192 4.192 7 C -0.544 4.544 8 S 1.496 4.504 9 O -0.859 6.859 10 C -0.556 4.556 11 C 0.000 4.000 12 C -0.557 4.557 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.723 3.277 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.203 1.203 20 C -0.071 4.071 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.138 0.862 25 H 0.142 0.858 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.815 15.878 8.321 18.327 hybrid contribution -1.863 -0.109 -2.344 2.996 sum -5.678 15.769 5.977 17.794 Atomic orbital electron populations 1.20769 0.91325 1.02637 1.02167 1.19983 0.96077 0.93366 1.02000 1.21096 0.94403 0.97192 0.98369 1.21092 0.94158 0.97649 1.02749 1.19571 0.95947 0.91605 0.94752 1.21071 0.90487 1.03782 1.03824 1.27949 1.02204 1.14486 1.09731 1.69207 1.07264 0.80827 0.93106 1.93042 1.61328 1.57208 1.74347 1.27671 1.06113 1.07209 1.14632 1.18792 0.94512 0.88446 0.98224 1.21109 1.35907 1.06743 0.91988 0.92567 1.25025 0.95698 0.95911 0.97721 1.69942 1.38227 1.11589 1.33483 0.86613 0.78397 0.77514 0.85225 1.20098 1.21147 1.20322 1.21032 0.93534 0.97948 0.94537 0.91353 0.91708 0.91587 0.86212 0.85782 0.89670 0.90683 0.90127 0.90794 0.87898 0.95260 0.95997 0.92726 0.85562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 36.01 0.36 -0.86 16 2 C -0.11 -1.55 5.88 -104.62 -0.62 -2.17 16 3 C -0.09 -1.10 9.70 -39.58 -0.38 -1.49 16 4 C -0.14 -1.60 9.70 -39.58 -0.38 -1.98 16 5 C -0.02 -0.22 5.88 -104.63 -0.62 -0.84 16 6 C -0.13 -1.27 9.56 36.00 0.34 -0.93 16 7 C -0.45 -7.06 5.63 -39.58 -0.22 -7.28 16 8 S 1.30 22.36 11.74 -107.50 -1.26 21.10 16 9 O -0.86 -19.91 16.78 -35.23 -0.59 -20.50 16 10 C -0.42 -8.53 5.82 37.15 0.22 -8.32 16 11 C 0.04 1.00 4.98 -27.88 -0.14 0.86 16 12 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 16 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.05 -0.85 9.11 -39.58 -0.36 -1.21 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 23 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 24 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 25 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.08 0.67 6.76 -51.93 -0.35 0.32 16 29 H 0.07 1.63 8.14 -51.92 -0.42 1.20 16 30 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.13 2.29 7.34 -52.49 -0.39 1.90 16 LS Contribution 302.88 15.07 4.56 4.56 Total: -1.00 -35.80 302.88 -8.70 -44.50 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.92 Total: -2.65 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: -2.21 Total: -37.62 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.59 Total: -20.50 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 22.36 SS G_CDS: -1.26 Total: 21.10 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.80 -8.70 -44.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084259271.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.228 kcal (2) G-P(sol) polarization free energy of solvation -35.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds