Wall clock time and date at job start Sun Mar 29 2020 22:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 119.99963 * 2 1 4 4 C 1.38217 * 120.00087 * 180.32327 * 3 2 1 5 5 C 1.38255 * 120.00132 * 359.92319 * 4 3 2 6 6 C 1.50694 * 120.00087 * 180.02562 * 5 4 3 7 7 C 1.38220 * 119.99697 * 0.07194 * 5 4 3 8 8 S 1.76199 * 119.99871 * 179.97438 * 7 5 4 9 9 O 1.42097 * 102.99747 * 161.12538 * 8 7 5 10 10 C 1.81407 * 103.00069 * 274.97848 * 8 7 5 11 11 C 1.52993 * 109.46882 * 180.02562 * 10 8 7 12 12 C 1.50708 * 109.46875 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99942 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99882 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00306 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99896 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47317 * 59.99926 * 16 14 12 18 18 H 1.48501 * 109.47237 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46642 * 299.99709 * 16 14 12 20 20 C 1.38215 * 120.00248 * 180.27050 * 2 1 3 21 21 H 1.09000 * 109.47344 * 269.72903 * 1 2 3 22 22 H 1.09003 * 109.46871 * 29.72833 * 1 2 3 23 23 H 1.09006 * 109.46644 * 149.72417 * 1 2 3 24 24 H 1.08001 * 120.00211 * 0.27430 * 3 2 1 25 25 H 1.08005 * 120.00081 * 179.97438 * 4 3 2 26 26 H 1.09001 * 109.47294 * 270.02134 * 6 5 4 27 27 H 1.09001 * 109.47215 * 30.02474 * 6 5 4 28 28 H 1.09005 * 109.46889 * 150.02650 * 6 5 4 29 29 H 1.08999 * 109.46697 * 299.99890 * 10 8 7 30 30 H 1.08998 * 109.47092 * 59.99997 * 10 8 7 31 31 H 1.08999 * 109.47280 * 299.99429 * 11 10 8 32 32 H 1.08998 * 109.47345 * 60.00047 * 11 10 8 33 33 H 0.97002 * 120.00490 * 180.02562 * 15 14 12 34 34 H 1.08000 * 119.99306 * 359.72702 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 -0.0068 5 6 4.2718 0.0001 -0.0119 6 6 5.7787 0.0001 -0.0187 7 6 3.5807 -1.1969 -0.0118 8 16 4.4617 -2.7228 -0.0190 9 8 3.4888 -3.6557 0.4308 10 6 4.7912 -2.9954 -1.7820 11 6 5.5630 -4.3044 -1.9600 12 6 5.8373 -4.5305 -3.4246 13 1 5.4956 -3.8122 -4.1552 14 6 6.5252 -5.6539 -3.8316 15 7 6.9425 -6.5278 -2.9419 16 14 6.8658 -5.9339 -5.6469 17 1 7.6730 -4.8066 -6.1787 18 1 7.6149 -7.2044 -5.8198 19 1 5.5798 -6.0136 -6.3852 20 6 2.1981 -1.1969 -0.0057 21 1 -0.3634 -0.0049 1.0276 22 1 -0.3633 0.8924 -0.5096 23 1 -0.3633 -0.8876 -0.5182 24 1 1.6583 2.1327 0.0045 25 1 4.1205 2.1327 -0.0072 26 1 6.1374 0.0023 -1.0480 27 1 6.1443 0.8890 0.4954 28 1 6.1443 -0.8910 0.4916 29 1 3.8469 -3.0543 -2.3232 30 1 5.3832 -2.1680 -2.1731 31 1 6.5073 -4.2459 -1.4188 32 1 4.9706 -5.1316 -1.5690 33 1 7.4269 -7.3180 -3.2282 34 1 1.6581 -2.1322 -0.0056 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084259271.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:58 Heat of formation + Delta-G solvation = -60.749604 kcal Electronic energy + Delta-G solvation = -15877.784115 eV Core-core repulsion = 13286.329441 eV Total energy + Delta-G solvation = -2591.454674 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34082 -36.88608 -35.74981 -34.80118 -32.88199 -32.01722 -30.11623 -27.34685 -25.75628 -24.16990 -23.10663 -21.94677 -18.79888 -18.40797 -17.18121 -16.78726 -16.56693 -16.25089 -15.76404 -15.48824 -15.03997 -14.83089 -14.35128 -14.04563 -13.78316 -13.71907 -13.45992 -13.16530 -12.85922 -12.71892 -12.64949 -12.51076 -12.48866 -12.05974 -11.98548 -11.88520 -11.52804 -10.88088 -10.59284 -10.16666 -9.47151 -9.25162 -8.21448 -6.34743 -0.06927 0.37109 0.97725 1.39547 1.42671 1.50934 1.87218 2.40176 2.67266 2.91745 3.10487 3.82652 3.93142 4.03890 4.24974 4.30932 4.32628 4.44723 4.59595 4.68925 4.79184 4.83239 4.95949 5.01085 5.02406 5.14478 5.30831 5.38838 5.45948 5.50500 5.53801 5.55341 5.75346 6.04879 6.17486 6.78330 7.34392 8.89267 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.029861 B = 0.004997 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.448331 B = 5602.113507 C = 5661.936134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.125 4.125 3 C -0.085 4.085 4 C -0.134 4.134 5 C -0.013 4.013 6 C -0.145 4.145 7 C -0.472 4.472 8 S 1.360 4.640 9 O -0.929 6.929 10 C -0.419 4.419 11 C 0.038 3.962 12 C -0.543 4.543 13 H 0.060 0.940 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.967 3.033 17 H -0.258 1.258 18 H -0.280 1.280 19 H -0.276 1.276 20 C -0.087 4.087 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.052 0.948 24 H 0.157 0.843 25 H 0.166 0.834 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.134 0.866 31 H 0.033 0.967 32 H -0.024 1.024 33 H 0.266 0.734 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 20.233 6.850 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.152 4.152 5 C -0.015 4.015 6 C -0.201 4.201 7 C -0.570 4.570 8 S 1.563 4.437 9 O -0.925 6.925 10 C -0.556 4.556 11 C 0.000 4.000 12 C -0.582 4.582 13 H 0.078 0.922 14 C -0.196 4.196 15 N -0.570 5.570 16 Si 0.791 3.209 17 H -0.182 1.182 18 H -0.205 1.205 19 H -0.201 1.201 20 C -0.106 4.106 21 H 0.097 0.903 22 H 0.109 0.891 23 H 0.071 0.929 24 H 0.175 0.825 25 H 0.183 0.817 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.152 0.848 31 H 0.051 0.949 32 H -0.006 1.006 33 H 0.075 0.925 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.017 19.473 7.668 21.145 hybrid contribution -2.175 -1.065 -2.066 3.183 sum -5.191 18.408 5.602 19.929 Atomic orbital electron populations 1.20822 0.89740 1.03284 1.03028 1.20290 0.97517 0.93042 1.01738 1.21593 0.95014 0.97654 0.95985 1.21624 0.94294 0.98626 1.00666 1.20004 0.97807 0.90757 0.92887 1.21293 0.87970 1.05846 1.05011 1.27511 1.02010 1.14197 1.13269 1.68371 1.06011 0.80135 0.89188 1.92912 1.63814 1.60698 1.75101 1.27613 1.04591 1.05584 1.17805 1.18659 0.94526 0.89640 0.97189 1.21565 1.36047 1.07291 0.93337 0.92163 1.25988 0.95302 0.95503 1.02834 1.70074 1.38905 1.12148 1.35913 0.85482 0.78385 0.78060 0.79007 1.18182 1.20523 1.20141 1.20990 0.94220 0.98017 0.97420 0.90333 0.89136 0.92878 0.82525 0.81656 0.88732 0.87359 0.89520 0.93221 0.84821 0.94901 1.00576 0.92471 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 10.01 71.24 0.71 -1.60 16 2 C -0.12 -3.27 5.88 -19.86 -0.12 -3.39 16 3 C -0.08 -1.69 9.70 22.27 0.22 -1.47 16 4 C -0.13 -2.49 9.70 22.27 0.22 -2.27 16 5 C -0.01 -0.30 5.88 -19.87 -0.12 -0.41 16 6 C -0.14 -2.20 9.56 71.23 0.68 -1.52 16 7 C -0.47 -14.81 5.63 22.27 0.13 -14.68 16 8 S 1.36 48.85 11.74 -56.49 -0.66 48.19 16 9 O -0.93 -45.94 16.78 -148.98 -2.50 -48.44 16 10 C -0.42 -17.70 5.82 71.98 0.42 -17.28 16 11 C 0.04 2.05 4.98 29.85 0.15 2.20 16 12 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 13 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 14 C 0.00 0.12 5.46 84.65 0.46 0.59 16 15 N -0.93 -56.93 13.29 21.44 0.28 -56.64 16 16 Si 0.97 44.40 29.54 68.60 2.03 46.42 16 17 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 C -0.09 -2.98 9.11 22.27 0.20 -2.77 16 21 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 23 H 0.05 1.21 8.09 -2.38 -0.02 1.19 16 24 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 25 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 26 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.11 0.97 8.09 -2.39 -0.02 0.95 16 28 H 0.09 1.21 6.76 -2.38 -0.02 1.19 16 29 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.13 4.69 8.14 -2.39 -0.02 4.67 16 31 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 32 H -0.02 -1.50 8.14 -2.39 -0.02 -1.52 16 33 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 34 H 0.09 3.65 7.34 -2.91 -0.02 3.63 16 Total: -1.00 -81.95 302.88 3.40 -78.55 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.07 Total: 5.74 kcal Atomic # 6 Polarization: -77.00 SS G_CDS: 3.18 Total: -73.81 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.28 Total: -56.64 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -2.50 Total: -48.44 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 48.85 SS G_CDS: -0.66 Total: 48.19 kcal Total: -81.95 3.40 -78.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084259271.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.796 kcal (2) G-P(sol) polarization free energy of solvation -81.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds