Wall clock time and date at job start Sun Mar 29 2020 22:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 119.99775 * 2 1 4 4 C 1.38215 * 119.99330 * 179.76116 * 3 2 1 5 5 C 1.38256 * 120.00293 * 0.54253 * 4 3 2 6 6 C 1.50705 * 119.99885 * 179.73907 * 5 4 3 7 7 C 1.38206 * 119.99883 * 359.45613 * 5 4 3 8 8 S 1.76205 * 120.00006 * 180.28118 * 7 5 4 9 9 O 1.42100 * 102.99852 * 32.08718 * 8 7 5 10 10 C 1.81399 * 102.99944 * 278.23707 * 8 7 5 11 11 C 1.53003 * 109.46992 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.46965 * 180.02562 * 11 10 8 13 13 H 1.08004 * 120.00443 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00186 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99423 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00351 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46606 * 60.00140 * 16 14 12 18 18 H 1.48499 * 109.46950 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46935 * 300.00242 * 16 14 12 20 20 C 1.38211 * 120.00223 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.47529 * 269.97723 * 1 2 3 22 22 H 1.09008 * 109.46861 * 29.97950 * 1 2 3 23 23 H 1.09002 * 109.47406 * 149.97412 * 1 2 3 24 24 H 1.07995 * 120.00208 * 0.02562 * 3 2 1 25 25 H 1.08004 * 120.00095 * 180.27870 * 4 3 2 26 26 H 1.09004 * 109.46961 * 239.56155 * 6 5 4 27 27 H 1.08991 * 109.47243 * 359.56169 * 6 5 4 28 28 H 1.09006 * 109.47149 * 119.56377 * 6 5 4 29 29 H 1.08999 * 109.47281 * 300.00093 * 10 8 7 30 30 H 1.09005 * 109.47318 * 60.00190 * 10 8 7 31 31 H 1.08999 * 109.47131 * 300.00121 * 11 10 8 32 32 H 1.08996 * 109.47468 * 60.00253 * 11 10 8 33 33 H 0.97002 * 119.99473 * 179.97438 * 15 14 12 34 34 H 1.08001 * 119.99637 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0050 5 6 4.2716 0.0000 -0.0014 6 6 5.7787 0.0000 -0.0019 7 6 3.5806 -1.1969 -0.0013 8 16 4.4616 -2.7229 -0.0019 9 8 5.6376 -2.4133 0.7332 10 6 4.8843 -2.9494 -1.7514 11 6 5.6652 -4.2539 -1.9226 12 6 6.0169 -4.4417 -3.3759 13 1 5.7134 -3.7046 -4.1047 14 6 6.7252 -5.5551 -3.7756 15 7 7.0943 -6.4530 -2.8882 16 14 7.1606 -5.7883 -5.5771 17 1 7.9947 -4.6486 -6.0362 18 1 7.9186 -7.0544 -5.7432 19 1 5.9152 -5.8468 -6.3837 20 6 2.1981 -1.1969 -0.0005 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3633 0.8902 -0.5136 23 1 -0.3634 -0.8897 -0.5142 24 1 1.6582 2.1327 0.0004 25 1 4.1205 2.1326 0.0095 26 1 6.1417 -0.5161 -0.8907 27 1 6.1420 1.0276 -0.0046 28 1 6.1424 -0.5116 0.8893 29 1 3.9701 -2.9932 -2.3434 30 1 5.4958 -2.1124 -2.0887 31 1 6.5794 -4.2105 -1.3306 32 1 5.0534 -5.0906 -1.5855 33 1 7.5923 -7.2365 -3.1694 34 1 1.6580 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084259273.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:00 Heat of formation + Delta-G solvation = -31.983622 kcal Electronic energy + Delta-G solvation = -15938.807463 eV Core-core repulsion = 13348.600176 eV Total energy + Delta-G solvation = -2590.207287 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.31507 -35.35581 -33.67962 -33.60086 -31.01528 -30.81927 -29.14325 -25.28210 -24.78127 -23.02474 -21.31115 -20.75228 -17.25438 -16.58098 -15.76692 -15.71412 -15.23120 -14.56076 -14.26944 -13.87361 -13.72950 -13.70985 -13.13366 -12.77279 -12.55103 -12.35144 -11.94964 -11.76350 -11.50620 -11.40812 -11.13783 -11.02480 -10.90450 -10.71168 -10.08972 -9.98839 -9.46544 -9.16901 -8.90678 -8.40157 -8.37381 -7.73467 -6.03554 -4.07267 1.10377 1.42301 2.34085 3.27035 3.31581 3.36220 3.38810 3.72127 4.42241 4.48365 4.81216 4.84607 5.01093 5.21033 5.29840 5.31538 5.49357 5.54367 5.66424 5.73437 5.90742 6.02116 6.05874 6.09242 6.24536 6.33940 6.49879 6.53999 6.67615 6.86421 7.04859 7.50649 7.61646 7.91848 8.34100 8.97023 9.56752 11.07026 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.030140 B = 0.005063 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.784374 B = 5528.847939 C = 5745.693450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.117 4.117 3 C -0.091 4.091 4 C -0.140 4.140 5 C -0.019 4.019 6 C -0.139 4.139 7 C -0.452 4.452 8 S 1.296 4.704 9 O -0.855 6.855 10 C -0.418 4.418 11 C 0.040 3.960 12 C -0.518 4.518 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.042 4.042 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.022 0.978 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.353 11.027 6.521 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.118 4.118 3 C -0.109 4.109 4 C -0.159 4.159 5 C -0.020 4.020 6 C -0.196 4.196 7 C -0.547 4.547 8 S 1.496 4.504 9 O -0.851 6.851 10 C -0.557 4.557 11 C 0.001 3.999 12 C -0.557 4.557 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.061 4.061 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.137 0.863 25 H 0.137 0.863 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.051 10.310 7.356 18.186 hybrid contribution 1.431 1.824 -1.989 3.054 sum -11.620 12.134 5.367 17.638 Atomic orbital electron populations 1.20752 0.91085 1.02755 1.02128 1.19964 0.96031 0.93425 1.02419 1.21087 0.94097 0.97480 0.98254 1.21148 0.94342 0.97548 1.02882 1.19960 0.96171 0.92521 0.93350 1.21280 0.90759 1.02122 1.05451 1.27986 1.02820 1.13939 1.09919 1.69264 0.98368 0.94856 0.87872 1.93022 1.49111 1.79991 1.62974 1.27681 1.07040 1.06351 1.14672 1.18780 0.94590 0.88401 0.98128 1.21116 1.35398 1.06410 0.92813 0.92611 1.25028 0.95757 0.95924 0.97658 1.69948 1.38616 1.11093 1.33596 0.86616 0.78592 0.77419 0.85147 1.20326 1.21155 1.20115 1.20717 0.92124 0.97826 0.95428 0.91397 0.91902 0.91273 0.86307 0.86321 0.91159 0.92541 0.87264 0.87994 0.90802 0.95978 0.95327 0.92747 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.00 0.36 -0.54 16 2 C -0.12 -1.36 5.88 -104.63 -0.62 -1.98 16 3 C -0.09 -1.09 9.70 -39.58 -0.38 -1.48 16 4 C -0.14 -1.93 9.67 -39.58 -0.38 -2.31 16 5 C -0.02 -0.31 5.86 -104.62 -0.61 -0.92 16 6 C -0.14 -2.38 8.37 36.01 0.30 -2.08 16 7 C -0.45 -6.91 5.57 -39.59 -0.22 -7.13 16 8 S 1.30 21.38 13.20 -107.50 -1.42 19.96 16 9 O -0.86 -18.29 14.20 -35.23 -0.50 -18.79 16 10 C -0.42 -8.40 5.82 37.16 0.22 -8.18 16 11 C 0.04 1.01 4.98 -27.88 -0.14 0.87 16 12 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 13 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.04 -0.52 9.41 -39.59 -0.37 -0.89 16 21 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.46 8.09 -51.92 -0.42 0.04 16 23 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 24 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 25 H 0.12 1.40 7.95 -52.48 -0.42 0.98 16 26 H 0.07 1.30 6.92 -51.93 -0.36 0.95 16 27 H 0.06 0.81 7.88 -51.93 -0.41 0.40 16 28 H 0.11 2.08 6.08 -51.93 -0.32 1.76 16 29 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 30 H 0.07 1.58 7.00 -51.92 -0.36 1.22 16 31 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 298.11 15.07 4.49 4.49 Total: -1.00 -34.65 298.11 -8.75 -43.40 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.78 Total: -1.71 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: -2.26 Total: -38.01 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.50 Total: -18.79 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 21.38 SS G_CDS: -1.42 Total: 19.96 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.65 -8.75 -43.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084259273.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.415 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds