Wall clock time and date at job start Sun Mar 29 2020 22:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99774 * 359.52161 * 4 3 2 6 6 S 1.76204 * 120.00078 * 180.23442 * 5 4 3 7 7 O 1.42104 * 102.99798 * 341.32436 * 6 5 4 8 8 C 1.81398 * 102.99868 * 95.17170 * 6 5 4 9 9 C 1.53003 * 109.47350 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47049 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00238 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99800 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99860 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00194 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47203 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47268 * 119.99566 * 14 12 10 17 17 H 1.48501 * 109.47204 * 239.99942 * 14 12 10 18 18 C 1.38211 * 120.00201 * 0.41152 * 5 4 3 19 19 C 1.50706 * 120.00280 * 179.82644 * 18 5 4 20 20 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 22 22 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 23 23 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 24 24 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 25 25 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 26 26 H 1.08995 * 109.47582 * 300.00641 * 8 6 5 27 27 H 1.09007 * 109.47038 * 60.00361 * 8 6 5 28 28 H 1.09004 * 109.46909 * 300.00344 * 9 8 6 29 29 H 1.08994 * 109.46811 * 59.99877 * 9 8 6 30 30 H 0.97005 * 120.00538 * 180.02562 * 13 12 10 31 31 H 1.08990 * 109.46925 * 270.02313 * 19 18 5 32 32 H 1.09003 * 109.46716 * 30.02175 * 19 18 5 33 33 H 1.08993 * 109.46977 * 150.01843 * 19 18 5 34 34 H 1.07996 * 120.00479 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 16 6.0337 -0.0003 -0.0014 7 8 6.3533 1.3096 -0.4502 8 6 6.4423 -0.1525 1.7594 9 6 7.9627 -0.1668 1.9309 10 6 8.3020 -0.2939 3.3936 11 1 7.5124 -0.3576 4.1276 12 6 9.6207 -0.3278 3.7949 13 7 10.5822 -0.2497 2.9011 14 14 10.0415 -0.4846 5.6081 15 1 8.7889 -0.5536 6.4028 16 1 10.8358 -1.7200 5.8269 17 1 10.8343 0.6959 6.0362 18 6 3.5806 -1.1971 0.0006 19 6 4.3340 -2.5023 0.0017 20 6 2.1980 -1.1970 0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8898 0.5139 23 1 -0.3633 0.8900 0.5137 24 1 1.6584 2.1326 -0.0005 25 1 4.1205 2.1325 -0.0099 26 1 6.0236 0.6937 2.3041 27 1 6.0235 -1.0797 2.1508 28 1 8.3817 -1.0129 1.3861 29 1 8.3811 0.7604 1.5396 30 1 11.5100 -0.2738 3.1833 31 1 4.5157 -2.8177 -1.0256 32 1 5.2865 -2.3715 0.5155 33 1 3.7449 -3.2614 0.5162 34 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084259527.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:02 Heat of formation + Delta-G solvation = -37.322859 kcal Electronic energy + Delta-G solvation = -15826.272389 eV Core-core repulsion = 13235.833575 eV Total energy + Delta-G solvation = -2590.438814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.34458 -35.19082 -33.71799 -33.56612 -31.91574 -30.84425 -27.47667 -26.73265 -25.25081 -22.23134 -21.41550 -20.61351 -17.57304 -16.69704 -15.93931 -15.63587 -14.80021 -14.57736 -14.32808 -13.90526 -13.76299 -13.68565 -13.22744 -13.07512 -12.65718 -12.36375 -12.07565 -11.73839 -11.66551 -11.53701 -11.24589 -11.01246 -10.92401 -10.71002 -10.09703 -10.06765 -9.47266 -9.11091 -8.85070 -8.65827 -8.40916 -7.70208 -6.03780 -4.07455 1.04773 1.42844 2.35023 3.25739 3.29293 3.36963 3.41072 3.74013 4.38735 4.45148 4.68996 4.79748 4.95750 5.20920 5.25285 5.31422 5.38845 5.43414 5.63246 5.64477 5.75530 5.83965 6.00462 6.02233 6.18906 6.27767 6.37556 6.49714 6.53871 6.84627 7.02655 7.50301 7.61355 7.91836 8.33845 8.97325 9.56691 11.06878 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.032768 B = 0.004849 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.291088 B = 5773.123765 C = 5964.473700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.060 4.060 3 C -0.146 4.146 4 C -0.048 4.048 5 C -0.458 4.458 6 S 1.296 4.704 7 O -0.864 6.864 8 C -0.420 4.420 9 C 0.038 3.962 10 C -0.516 4.516 11 H 0.057 0.943 12 C 0.057 3.943 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.284 1.284 18 C -0.008 4.008 19 C -0.135 4.135 20 C -0.142 4.142 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.119 0.881 25 H 0.127 0.873 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.029 0.971 29 H 0.022 0.978 30 H 0.262 0.738 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.141 -5.716 -7.542 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.060 4.060 3 C -0.165 4.165 4 C -0.067 4.067 5 C -0.553 4.553 6 S 1.497 4.503 7 O -0.859 6.859 8 C -0.559 4.559 9 C -0.001 4.001 10 C -0.556 4.556 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.532 5.532 14 Si 0.722 3.278 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.210 1.210 18 C -0.009 4.009 19 C -0.192 4.192 20 C -0.161 4.161 21 H 0.090 0.910 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.137 0.863 25 H 0.145 0.855 26 H 0.092 0.908 27 H 0.121 0.879 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.374 -5.614 -8.371 19.227 hybrid contribution -0.771 1.744 2.343 3.021 sum -17.145 -3.869 -6.027 18.581 Atomic orbital electron populations 1.20831 0.91291 1.02812 1.02324 1.20017 0.95867 0.93371 0.96762 1.21067 0.94332 0.97477 1.03641 1.21127 0.94177 0.97911 0.93444 1.27927 1.20493 0.96238 1.10611 1.69322 0.80640 1.07402 0.92980 1.93040 1.77652 1.40939 1.74310 1.27703 1.07148 1.06179 1.14842 1.18804 0.84974 0.98005 0.98272 1.21188 0.91864 1.50497 0.92047 0.92456 1.25034 0.96464 0.95220 0.97717 1.69963 0.99652 1.50355 1.33255 0.86499 0.78425 0.77717 0.85160 1.19768 1.20814 1.20984 1.19575 0.93416 0.94057 0.93845 1.21083 1.00866 0.93675 1.03594 1.20977 0.93783 0.97406 1.03966 0.91039 0.91410 0.91554 0.86290 0.85512 0.90776 0.87910 0.95255 0.95978 0.92846 0.89632 0.90071 0.90644 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.06 -0.72 5.88 -104.62 -0.62 -1.34 16 3 C -0.15 -2.01 9.70 -39.58 -0.38 -2.39 16 4 C -0.05 -0.79 9.45 -39.58 -0.37 -1.16 16 5 C -0.46 -7.20 5.63 -39.58 -0.22 -7.42 16 6 S 1.30 22.40 11.80 -107.50 -1.27 21.13 16 7 O -0.86 -19.93 16.78 -35.23 -0.59 -20.52 16 8 C -0.42 -8.61 5.71 37.16 0.21 -8.40 16 9 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 10 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.71 13.28 55.43 0.74 -25.97 16 14 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 C -0.01 -0.10 5.88 -104.62 -0.62 -0.71 16 19 C -0.14 -1.28 9.56 36.01 0.34 -0.94 16 20 C -0.14 -1.67 9.36 -39.58 -0.37 -2.04 16 21 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 23 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 24 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 25 H 0.13 2.27 7.34 -52.49 -0.39 1.89 16 26 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 27 H 0.10 1.84 7.51 -51.92 -0.39 1.45 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.78 6.02 -51.93 -0.31 0.46 16 33 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 301.46 15.07 4.54 4.54 Total: -1.00 -35.94 301.46 -8.66 -44.61 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.85 Total: -2.78 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: -2.21 Total: -37.60 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.59 Total: -20.52 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 22.40 SS G_CDS: -1.27 Total: 21.13 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.94 -8.66 -44.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084259527.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.282 kcal (2) G-P(sol) polarization free energy of solvation -35.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds