Wall clock time and date at job start Sun Mar 29 2020 22:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38252 * 119.99752 * 2 1 4 4 C 1.38214 * 120.00236 * 179.76803 * 3 2 1 5 5 C 1.38262 * 119.99287 * 0.48645 * 4 3 2 6 6 S 1.76197 * 119.99586 * 179.76622 * 5 4 3 7 7 O 1.42103 * 103.00141 * 19.21023 * 6 5 4 8 8 C 1.81400 * 103.00221 * 265.35869 * 6 5 4 9 9 C 1.52997 * 109.47519 * 180.02562 * 8 6 5 10 10 C 1.50693 * 109.47492 * 179.97438 * 9 8 6 11 11 H 1.08009 * 119.99778 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00195 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99915 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00174 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.46972 * 89.99531 * 14 12 10 16 16 H 1.48495 * 109.47335 * 210.00152 * 14 12 10 17 17 H 1.48510 * 109.46828 * 329.99855 * 14 12 10 18 18 C 1.38209 * 120.00161 * 359.49053 * 5 4 3 19 19 C 1.50701 * 119.99697 * 180.27172 * 18 5 4 20 20 C 1.38209 * 120.00189 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.47342 * 270.01475 * 1 2 3 22 22 H 1.08993 * 109.47174 * 30.02373 * 1 2 3 23 23 H 1.09006 * 109.46964 * 150.01822 * 1 2 3 24 24 H 1.08008 * 119.99979 * 0.02562 * 3 2 1 25 25 H 1.07996 * 120.00228 * 180.25745 * 4 3 2 26 26 H 1.09011 * 109.46904 * 300.00122 * 8 6 5 27 27 H 1.09000 * 109.47305 * 59.99656 * 8 6 5 28 28 H 1.09002 * 109.47156 * 299.99886 * 9 8 6 29 29 H 1.09000 * 109.47361 * 59.99387 * 9 8 6 30 30 H 0.97001 * 120.00087 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.46949 * 84.60619 * 19 18 5 32 32 H 1.09007 * 109.47033 * 204.59748 * 19 18 5 33 33 H 1.08996 * 109.47454 * 324.60315 * 19 18 5 34 34 H 1.08008 * 120.00162 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 0.0048 5 6 4.2717 0.0001 -0.0005 6 16 6.0336 0.0002 -0.0005 7 8 6.3533 1.3057 0.4608 8 6 6.4417 -0.1350 -1.7628 9 6 7.9619 -0.1488 -1.9348 10 6 8.3009 -0.2617 -3.3988 11 1 7.5110 -0.3177 -4.1332 12 6 9.6194 -0.2926 -3.8007 13 7 9.9152 -0.3907 -5.0785 14 14 10.9857 -0.1952 -2.5306 15 1 11.3476 -1.5653 -2.0868 16 1 12.1746 0.4608 -3.1317 17 1 10.5208 0.5966 -1.3633 18 6 3.5806 -1.1969 0.0000 19 6 4.3342 -2.5019 0.0004 20 6 2.1981 -1.1969 0.0005 21 1 -0.3634 0.0003 1.0277 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5136 24 1 1.6581 2.1327 0.0004 25 1 4.1203 2.1327 0.0090 26 1 6.0228 -1.0585 -2.1630 27 1 6.0227 0.7163 -2.2992 28 1 8.3812 0.7743 -1.5346 29 1 8.3806 -1.0004 -1.3985 30 1 10.8428 -0.4128 -5.3613 31 1 4.5997 -2.7679 1.0236 32 1 3.7067 -3.2840 -0.4271 33 1 5.2413 -2.3979 -0.5949 34 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084259532.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:04 Heat of formation + Delta-G solvation = -58.070164 kcal Electronic energy + Delta-G solvation = -15871.539279 eV Core-core repulsion = 13280.200795 eV Total energy + Delta-G solvation = -2591.338485 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36915 -36.90207 -35.73225 -34.53750 -33.26501 -32.94654 -28.31758 -27.72019 -27.47141 -23.34203 -22.87645 -21.69287 -19.22393 -18.83635 -17.43946 -16.79407 -16.34216 -15.96758 -15.78560 -15.55511 -14.95187 -14.81805 -14.64737 -14.08968 -13.91513 -13.84046 -13.46428 -13.16023 -12.88823 -12.86010 -12.63287 -12.50055 -12.35740 -12.05520 -12.00311 -11.74876 -11.55426 -10.95815 -10.78538 -9.98136 -9.69932 -9.25056 -8.32015 -6.37771 -0.11073 0.37741 0.95753 1.35237 1.39503 1.50871 1.82098 2.35307 2.61286 2.92007 3.02695 3.79334 3.89130 3.95430 4.18622 4.29551 4.36151 4.41635 4.63559 4.69739 4.78529 4.79675 4.86229 5.01212 5.04806 5.14060 5.26909 5.27854 5.31309 5.46831 5.50340 5.55909 5.57121 6.02689 6.23805 6.68520 7.26713 8.84620 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.036593 B = 0.005040 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.989139 B = 5553.700296 C = 5674.328709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.052 4.052 3 C -0.160 4.160 4 C -0.077 4.077 5 C -0.485 4.485 6 S 1.373 4.627 7 O -0.923 6.923 8 C -0.423 4.423 9 C 0.001 3.999 10 C -0.532 4.532 11 H 0.031 0.969 12 C 0.007 3.993 13 N -0.949 5.949 14 Si 0.942 3.058 15 H -0.242 1.242 16 H -0.284 1.284 17 H -0.256 1.256 18 C 0.000 4.000 19 C -0.146 4.146 20 C -0.145 4.145 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.133 0.867 25 H 0.097 0.903 26 H 0.130 0.870 27 H 0.047 0.953 28 H 0.002 0.998 29 H 0.059 0.941 30 H 0.268 0.732 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.269 -7.760 15.041 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.179 4.179 4 C -0.097 4.097 5 C -0.583 4.583 6 S 1.575 4.425 7 O -0.919 6.919 8 C -0.559 4.559 9 C -0.037 4.037 10 C -0.571 4.571 11 H 0.049 0.951 12 C -0.191 4.191 13 N -0.590 5.590 14 Si 0.764 3.236 15 H -0.165 1.165 16 H -0.210 1.210 17 H -0.180 1.180 18 C -0.002 4.002 19 C -0.203 4.203 20 C -0.163 4.163 21 H 0.106 0.894 22 H 0.090 0.910 23 H 0.105 0.895 24 H 0.151 0.849 25 H 0.115 0.885 26 H 0.148 0.852 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.514 -7.681 15.706 24.049 hybrid contribution -0.153 2.591 -1.600 3.049 sum -16.667 -5.090 14.106 22.420 Atomic orbital electron populations 1.20930 0.88426 1.04104 1.03718 1.20525 0.97991 0.92711 0.94038 1.21282 0.93312 0.99331 1.04009 1.21098 0.95710 0.97167 0.95707 1.27467 1.18616 0.97595 1.14608 1.68458 0.81455 1.04678 0.87953 1.92914 1.80388 1.44374 1.74261 1.27606 1.02902 1.06753 1.18669 1.19207 0.91024 0.97290 0.96214 1.21366 0.92683 1.50676 0.92389 0.95062 1.26022 1.01709 0.93834 0.97503 1.70060 1.19772 1.52037 1.17087 0.85782 0.77839 0.80575 0.79417 1.16511 1.21012 1.17980 1.20027 0.94385 0.94197 0.91545 1.21331 1.00937 0.92257 1.05729 1.21494 0.93478 0.98878 1.02465 0.89360 0.91039 0.89485 0.84940 0.88512 0.85163 0.93418 0.97933 0.92282 0.92295 0.86741 0.88167 0.90118 0.82016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 10.01 71.24 0.71 -0.76 16 2 C -0.05 -1.08 5.88 -19.87 -0.12 -1.20 16 3 C -0.16 -4.19 9.70 22.27 0.22 -3.98 16 4 C -0.08 -2.55 9.45 22.27 0.21 -2.34 16 5 C -0.48 -14.44 5.63 22.27 0.13 -14.31 16 6 S 1.37 44.50 11.89 -56.49 -0.67 43.83 16 7 O -0.92 -41.69 16.79 -148.98 -2.50 -44.19 16 8 C -0.42 -16.96 5.73 71.98 0.41 -16.55 16 9 C 0.00 0.06 4.05 29.84 0.12 0.18 16 10 C -0.53 -31.49 9.66 25.60 0.25 -31.24 16 11 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 12 C 0.01 0.39 5.47 84.65 0.46 0.85 16 13 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 14 Si 0.94 44.18 27.47 68.60 1.88 46.06 16 15 H -0.24 -10.14 7.11 99.48 0.71 -9.43 16 16 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 17 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 18 C 0.00 0.00 5.88 -19.87 -0.12 -0.12 16 19 C -0.15 -2.01 9.45 71.24 0.67 -1.34 16 20 C -0.14 -2.74 9.34 22.27 0.21 -2.53 16 21 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 23 H 0.09 0.83 8.09 -2.38 -0.02 0.81 16 24 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 25 H 0.10 3.66 7.35 -2.91 -0.02 3.64 16 26 H 0.13 4.50 7.47 -2.38 -0.02 4.48 16 27 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.00 0.12 7.20 -2.39 -0.02 0.10 16 29 H 0.06 2.42 7.57 -2.39 -0.02 2.40 16 30 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 0.95 8.05 -2.38 -0.02 0.93 16 33 H 0.08 1.16 6.24 -2.39 -0.01 1.15 16 34 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -83.50 298.00 3.19 -80.32 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.02 Total: 7.19 kcal Atomic # 6 Polarization: -76.49 SS G_CDS: 3.16 Total: -73.33 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.30 Total: -59.89 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -2.50 Total: -44.19 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Atomic # 16 Polarization: 44.50 SS G_CDS: -0.67 Total: 43.83 kcal Total: -83.50 3.19 -80.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084259532.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.249 kcal (2) G-P(sol) polarization free energy of solvation -83.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds