Wall clock time and date at job start Sun Mar 29 2020 23:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38280 * 119.94780 * 2 1 4 4 C 1.38492 * 120.12017 * 179.97438 * 3 2 1 5 5 F 1.35097 * 119.98629 * 180.02562 * 4 3 2 6 6 C 1.38345 * 120.02723 * 0.02562 * 4 3 2 7 7 C 1.38849 * 119.90047 * 0.02562 * 6 4 3 8 8 N 1.39670 * 120.06393 * 179.97438 * 7 6 4 9 9 C 1.46500 * 119.99722 * 0.02562 * 8 7 6 10 10 C 1.50700 * 109.46970 * 180.02562 * 9 8 7 11 11 O 1.21296 * 120.00248 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00138 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00078 * 179.97438 * 12 10 9 14 14 H 1.07995 * 120.00254 * 0.02562 * 13 12 10 15 15 C 1.38957 * 119.99915 * 179.97438 * 13 12 10 16 16 N 1.31410 * 119.99995 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00090 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46817 * 59.99974 * 17 15 13 19 19 H 1.48497 * 109.47097 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47078 * 300.00490 * 17 15 13 21 21 C 1.38088 * 119.95190 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.46899 * 89.99874 * 1 2 3 23 23 H 1.08996 * 109.47160 * 210.00013 * 1 2 3 24 24 H 1.08997 * 109.47119 * 330.00292 * 1 2 3 25 25 H 1.07999 * 119.93639 * 359.97438 * 3 2 1 26 26 H 1.08004 * 120.05292 * 179.74478 * 6 4 3 27 27 H 0.96994 * 120.00014 * 179.97438 * 8 7 6 28 28 H 1.09002 * 109.47003 * 299.99856 * 9 8 7 29 29 H 1.09001 * 109.47709 * 60.00237 * 9 8 7 30 30 H 0.97005 * 119.99933 * 359.97438 * 12 10 9 31 31 H 0.97000 * 120.00117 * 179.97438 * 16 15 13 32 32 H 1.08000 * 120.01347 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5822 1.2023 0.0005 5 9 4.2539 2.3745 0.0011 6 6 4.2781 0.0067 0.0005 7 6 3.5860 -1.1970 -0.0005 8 7 4.2851 -2.4062 -0.0011 9 6 5.7501 -2.4052 0.0001 10 6 6.2533 -3.8257 -0.0015 11 8 5.4658 -4.7481 -0.0028 12 7 7.5786 -4.0711 -0.0003 13 6 8.0364 -5.3634 -0.0011 14 1 7.3352 -6.1847 -0.0032 15 6 9.4027 -5.6164 -0.0004 16 7 10.2560 -4.6170 0.0016 17 14 10.0266 -7.3771 -0.0008 18 1 9.5327 -8.0769 -1.2140 19 1 11.5115 -7.3761 0.0007 20 1 9.5312 -8.0781 1.2110 21 6 2.1964 -1.1965 0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6554 2.1324 -0.0004 26 1 5.3581 0.0094 -0.0032 27 1 3.8006 -3.2465 -0.0015 28 1 6.1137 -1.8903 -0.8892 29 1 6.1125 -1.8919 0.8908 30 1 8.2084 -3.3334 0.0012 31 1 11.2098 -4.7936 0.0025 32 1 1.6559 -2.1314 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085730778.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:55 Heat of formation + Delta-G solvation = -66.847808 kcal Electronic energy + Delta-G solvation = -17305.995846 eV Core-core repulsion = 14180.356309 eV Total energy + Delta-G solvation = -3125.639537 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.79012 -39.47063 -38.31607 -35.39674 -34.04916 -31.95230 -31.44354 -29.90469 -27.09583 -26.68381 -24.39454 -22.34804 -20.98255 -19.49219 -18.16960 -17.59718 -16.54576 -16.08114 -15.83395 -15.53276 -14.95304 -14.80605 -14.65556 -14.30562 -13.73626 -13.67054 -13.22878 -13.17861 -12.74276 -12.28402 -12.01838 -11.70159 -11.65511 -11.61546 -11.13642 -11.13128 -10.53669 -10.34589 -9.84185 -9.65835 -8.68122 -8.59995 -8.14893 -7.34758 -6.55679 -3.97825 1.29532 1.54648 3.10968 3.19105 3.22298 3.49396 3.67459 3.75906 4.08347 4.37460 4.73964 4.82160 5.11156 5.12130 5.23563 5.24953 5.44235 5.49590 5.58475 5.65329 5.82536 5.83810 6.02969 6.10299 6.23209 6.32470 6.54604 6.89547 7.40007 7.42123 7.87043 7.97786 8.40713 9.00522 9.34186 9.82303 10.61132 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.041416 B = 0.003896 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.908030 B = 7184.476905 C = 7839.939384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.013 4.013 3 C -0.227 4.227 4 C 0.150 3.850 5 F -0.143 7.143 6 C -0.248 4.248 7 C 0.259 3.741 8 N -0.717 5.717 9 C 0.109 3.891 10 C 0.428 3.572 11 O -0.595 6.595 12 N -0.549 5.549 13 C -0.307 4.307 14 H 0.105 0.895 15 C 0.027 3.973 16 N -0.895 5.895 17 Si 0.934 3.066 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C -0.211 4.211 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.126 0.874 26 H 0.134 0.866 27 H 0.414 0.586 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.395 0.605 31 H 0.275 0.725 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.485 10.265 -0.025 16.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.014 4.014 3 C -0.248 4.248 4 C 0.130 3.870 5 F -0.122 7.122 6 C -0.272 4.272 7 C 0.151 3.849 8 N -0.346 5.346 9 C -0.019 4.019 10 C 0.214 3.786 11 O -0.482 6.482 12 N -0.184 5.184 13 C -0.436 4.436 14 H 0.123 0.877 15 C -0.176 4.176 16 N -0.535 5.535 17 Si 0.761 3.239 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.234 4.234 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.144 0.856 26 H 0.152 0.848 27 H 0.253 0.747 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.229 0.771 31 H 0.085 0.915 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.499 9.651 -0.024 15.791 hybrid contribution 0.935 -0.449 -0.008 1.037 sum -11.564 9.202 -0.033 14.779 Atomic orbital electron populations 1.20801 0.90838 1.02884 1.02520 1.19356 0.95697 0.91643 0.94661 1.20610 0.91921 0.98791 1.13441 1.17318 0.89853 0.80472 0.99381 1.91472 1.80818 1.46141 1.93732 1.20526 1.00673 0.90200 1.15825 1.17507 0.90812 0.85834 0.90717 1.44567 1.05136 1.05753 1.79187 1.21008 0.81228 0.97480 1.02192 1.19690 0.83757 0.89470 0.85727 1.90505 1.55151 1.45340 1.57173 1.41789 1.04665 1.09231 1.62675 1.19687 0.91398 0.84075 1.48448 0.87738 1.25323 0.95666 0.99951 0.96680 1.69598 1.03207 1.31514 1.49206 0.85865 0.77397 0.81482 0.79204 1.19738 1.20807 1.19742 1.20490 0.91785 0.98362 1.12772 0.90860 0.91243 0.91417 0.85595 0.84845 0.74680 0.90427 0.90417 0.77097 0.91494 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.01 0.36 -0.57 16 2 C -0.01 -0.15 5.88 -104.66 -0.61 -0.76 16 3 C -0.23 -2.75 9.68 -39.47 -0.38 -3.14 16 4 C 0.15 2.07 7.30 -39.45 -0.29 1.78 16 5 F -0.14 -2.01 17.27 2.25 0.04 -1.97 16 6 C -0.25 -3.58 9.29 -39.32 -0.37 -3.94 16 7 C 0.26 3.81 6.65 -83.80 -0.56 3.25 16 8 N -0.72 -11.69 5.70 -59.81 -0.34 -12.03 16 9 C 0.11 1.88 5.39 -5.19 -0.03 1.85 16 10 C 0.43 9.67 7.85 -10.99 -0.09 9.59 16 11 O -0.60 -15.33 15.24 5.54 0.08 -15.24 16 12 N -0.55 -13.38 5.29 -10.96 -0.06 -13.44 16 13 C -0.31 -8.28 9.68 -14.93 -0.14 -8.43 16 14 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 15 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 16 N -0.90 -23.61 13.05 55.50 0.72 -22.89 16 17 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 C -0.21 -2.73 9.55 -39.37 -0.38 -3.11 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 24 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 25 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 26 H 0.13 1.85 6.73 -52.48 -0.35 1.49 16 27 H 0.41 7.07 7.45 -40.82 -0.30 6.77 16 28 H 0.08 1.22 7.94 -51.93 -0.41 0.81 16 29 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 30 H 0.40 9.16 7.90 -40.82 -0.32 8.84 16 31 H 0.28 6.87 8.31 -40.82 -0.34 6.54 16 32 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 288.06 15.07 4.34 4.34 Total: -1.00 -29.15 288.06 -6.24 -35.38 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -3.42 Total: 13.34 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -2.58 Total: -2.88 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.33 Total: -48.36 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.08 Total: -15.24 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.15 -6.24 -35.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085730778.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.463 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds