Wall clock time and date at job start Sun Mar 29 2020 22:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46580 * 179.97438 * 9 7 2 11 11 C 1.47479 * 110.99749 * 265.96411 * 10 9 7 12 12 C 1.53516 * 87.93219 * 221.29945 * 11 10 9 13 13 N 1.46495 * 114.34342 * 272.36773 * 12 11 10 14 14 C 1.34781 * 126.58734 * 8.63429 * 13 12 11 15 15 C 1.36669 * 106.83450 * 179.85450 * 14 13 12 16 16 C 1.47391 * 125.78105 * 180.15917 * 15 14 13 17 17 O 1.21513 * 119.99863 * 0.28021 * 16 15 14 18 18 O 1.34748 * 119.99876 * 180.27951 * 16 15 14 19 19 N 1.34439 * 108.43966 * 0.41742 * 15 14 13 20 20 N 1.28755 * 109.51087 * 359.74502 * 19 15 14 21 21 C 1.47486 * 110.99427 * 169.99449 * 10 9 7 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 24 24 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 25 25 H 1.08997 * 113.47686 * 336.06557 * 11 10 9 26 26 H 1.09000 * 113.47438 * 106.53462 * 11 10 9 27 27 H 1.09000 * 114.16807 * 139.67451 * 12 11 10 28 28 H 1.08000 * 126.58148 * 359.96429 * 14 13 12 29 29 H 0.96709 * 116.99829 * 179.97438 * 18 16 15 30 30 H 1.08998 * 113.47524 * 253.46260 * 21 10 9 31 31 H 1.08993 * 113.47820 * 23.94200 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0010 -2.5792 -0.0001 11 6 4.2679 -3.0455 1.3734 12 6 5.5416 -3.7155 0.8389 13 7 5.3416 -5.0759 0.3334 14 6 4.1608 -5.6993 0.1499 15 6 4.4423 -6.9448 -0.3371 16 6 3.4507 -7.9772 -0.6883 17 8 2.2643 -7.7499 -0.5565 18 8 3.8598 -9.1730 -1.1557 19 7 5.7771 -7.0711 -0.4361 20 7 6.3421 -5.9816 -0.0468 21 6 5.4557 -2.6255 -0.2388 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6798 -0.8895 24 1 3.8745 -0.6809 0.8904 25 1 4.4653 -2.2360 2.0761 26 1 3.5269 -3.7542 1.7430 27 1 6.4044 -3.6240 1.4985 28 1 3.1804 -5.2920 0.3480 29 1 3.1726 -9.8181 -1.3722 30 1 5.7212 -2.9784 -1.2353 31 1 5.9700 -1.7040 0.0339 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086194397.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:22 Heat of formation + Delta-G solvation = 56.301994 kcal Electronic energy + Delta-G solvation = -17991.175221 eV Core-core repulsion = 14890.795823 eV Total energy + Delta-G solvation = -3100.379399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.35570 -40.05268 -39.57975 -36.09666 -33.96502 -32.67300 -31.12540 -29.90572 -26.34259 -26.09512 -24.47406 -23.18937 -21.47825 -21.02397 -20.03050 -17.96059 -17.51407 -16.98942 -16.34388 -16.10822 -15.68965 -15.03551 -14.70985 -14.37728 -14.26849 -13.65450 -13.39383 -12.73422 -12.68040 -12.26977 -12.05019 -11.69874 -11.59939 -11.26178 -11.16777 -10.79637 -10.73372 -10.40104 -10.16631 -9.98667 -9.55764 -9.34795 -8.73401 -8.41093 -6.18828 -4.18607 1.10218 1.50779 1.90297 2.92897 3.03604 3.15187 3.23008 3.25113 3.90956 4.14848 4.26235 4.27508 4.71262 4.86089 4.98465 5.09391 5.13945 5.37551 5.51338 5.53011 5.66773 5.72789 5.82344 5.99487 6.37374 6.38183 6.46815 7.01271 7.34382 7.55824 7.75217 8.01876 8.43286 8.90276 9.40473 10.94130 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.029367 B = 0.005254 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.222936 B = 5327.837495 C = 6095.714919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.268 1.268 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.455 5.455 11 C 0.005 3.995 12 C 0.105 3.895 13 N -0.328 5.328 14 C 0.139 3.861 15 C -0.108 4.108 16 C 0.578 3.422 17 O -0.508 6.508 18 O -0.501 6.501 19 N -0.187 5.187 20 N -0.067 5.067 21 C -0.011 4.011 22 H 0.266 0.734 23 H 0.032 0.968 24 H 0.001 0.999 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.212 0.788 29 H 0.414 0.586 30 H 0.089 0.911 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.914 -9.866 2.244 14.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.193 1.193 6 H -0.209 1.209 7 C -0.552 4.552 8 H 0.100 0.900 9 C 0.002 3.998 10 N -0.178 5.178 11 C -0.125 4.125 12 C 0.002 3.998 13 N -0.110 5.110 14 C -0.019 4.019 15 C -0.245 4.245 16 C 0.419 3.581 17 O -0.395 6.395 18 O -0.311 6.311 19 N -0.061 5.061 20 N -0.048 5.048 21 C -0.141 4.141 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.019 0.981 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.144 0.856 28 H 0.229 0.771 29 H 0.272 0.728 30 H 0.107 0.893 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.746 -9.901 1.788 15.466 hybrid contribution -0.671 1.508 0.442 1.708 sum 11.075 -8.394 2.230 14.074 Atomic orbital electron populations 1.69887 1.06150 1.27042 1.50163 1.24920 0.94761 0.98861 0.94663 0.86876 0.80293 0.84122 0.78510 1.20195 1.19307 1.20936 1.20889 0.88182 0.94962 1.51198 0.90033 1.20759 0.98493 0.84483 0.96094 1.69111 1.09977 1.24911 1.13819 1.24276 0.93550 0.99732 0.94930 1.22821 1.02108 0.76389 0.98456 1.50021 1.05101 1.12782 1.43098 1.23444 0.93728 0.91063 0.93649 1.20064 0.90809 0.95445 1.18181 1.19070 0.85614 0.80331 0.73074 1.90977 1.17296 1.80114 1.51095 1.84631 1.44711 1.24811 1.76982 1.74720 1.05760 1.15513 1.10152 1.82021 1.10722 0.93508 1.18508 1.24255 0.93820 0.96521 0.99485 0.92446 0.95022 0.98100 0.88538 0.88862 0.85556 0.77130 0.72770 0.89277 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.87 20.17 27.47 -169.99 -4.67 15.50 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -13.74 9.94 -34.44 -0.34 -14.08 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 C 0.13 2.76 3.64 -4.97 -0.02 2.74 16 10 N -0.46 -8.07 6.08 -246.07 -1.50 -9.57 16 11 C 0.01 0.07 6.90 -7.53 -0.05 0.02 16 12 C 0.11 1.26 5.44 -67.71 -0.37 0.89 16 13 N -0.33 -4.55 3.85 -54.28 -0.21 -4.76 16 14 C 0.14 2.01 10.18 -16.82 -0.17 1.84 16 15 C -0.11 -1.62 7.02 -83.57 -0.59 -2.21 16 16 C 0.58 8.11 8.33 34.46 0.29 8.40 16 17 O -0.51 -8.23 17.65 -19.28 -0.34 -8.57 16 18 O -0.50 -5.49 13.43 -40.62 -0.55 -6.04 16 19 N -0.19 -2.94 12.39 32.84 0.41 -2.54 16 20 N -0.07 -1.02 13.78 60.35 0.83 -0.19 16 21 C -0.01 -0.14 7.49 -7.53 -0.06 -0.20 16 22 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.03 0.70 7.14 -51.93 -0.37 0.33 16 24 H 0.00 0.03 6.73 -51.93 -0.35 -0.32 16 25 H 0.10 1.22 7.42 -51.93 -0.39 0.83 16 26 H 0.09 1.27 7.01 -51.93 -0.36 0.90 16 27 H 0.13 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.21 2.95 7.24 -52.49 -0.38 2.57 16 29 H 0.41 2.29 9.11 45.56 0.42 2.70 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.09 1.05 7.91 -51.93 -0.41 0.64 16 LS Contribution 279.00 15.07 4.20 4.20 Total: -1.00 -32.96 279.00 -4.73 -37.69 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -2.28 Total: 0.73 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.41 Total: -0.76 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.31 Total: -42.75 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.89 Total: -14.61 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.96 -4.73 -37.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086194397.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.989 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds