Wall clock time and date at job start Sun Mar 29 2020 22:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38235 * 119.99732 * 2 1 4 4 C 1.38237 * 120.00192 * 179.97438 * 3 2 1 5 5 C 1.38240 * 119.99739 * 359.95662 * 4 3 2 6 6 S 1.76192 * 120.00060 * 179.97438 * 5 4 3 7 7 O 1.42108 * 103.00260 * 336.14827 * 6 5 4 8 8 C 1.81399 * 103.00037 * 90.00256 * 6 5 4 9 9 C 1.53006 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46626 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.46957 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99816 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00340 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00347 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99775 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.46867 * 90.00546 * 15 13 11 17 17 H 1.48501 * 109.47216 * 210.00404 * 15 13 11 18 18 H 1.48499 * 109.47135 * 330.00745 * 15 13 11 19 19 C 1.38236 * 119.99602 * 0.27551 * 5 4 3 20 20 C 1.38229 * 120.00227 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.47275 * 90.00301 * 1 2 3 22 22 H 1.09002 * 109.47259 * 210.00026 * 1 2 3 23 23 H 1.08995 * 109.47173 * 329.99930 * 1 2 3 24 24 H 1.07996 * 120.00282 * 359.97438 * 3 2 1 25 25 H 1.07994 * 120.00542 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.47234 * 60.00072 * 8 6 5 27 27 H 1.09001 * 109.47232 * 299.99583 * 8 6 5 28 28 H 1.08993 * 109.46955 * 300.00150 * 9 8 6 29 29 H 1.09000 * 109.47050 * 59.99979 * 9 8 6 30 30 H 1.08993 * 109.47839 * 299.99931 * 10 9 8 31 31 H 1.09000 * 109.47160 * 60.00369 * 10 9 8 32 32 H 0.96991 * 119.99882 * 179.97438 * 14 13 11 33 33 H 1.08006 * 119.99447 * 179.72457 * 19 5 4 34 34 H 1.08002 * 120.00014 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 0.0020 6 16 6.0336 0.0002 0.0020 7 8 6.3533 1.2659 -0.5595 8 6 6.4417 0.0022 1.7695 9 6 7.9620 0.0018 1.9419 10 6 8.3061 0.0042 3.4327 11 6 9.8036 0.0044 3.6026 12 1 10.4455 0.0034 2.7341 13 6 10.3540 0.0059 4.8667 14 7 11.6608 0.0066 5.0149 15 14 9.2436 0.0084 6.3688 16 1 8.9490 -1.3911 6.7688 17 1 9.9246 0.7097 7.4867 18 1 7.9745 0.7083 6.0452 19 6 3.5805 -1.1970 -0.0029 20 6 2.1982 -1.1971 0.0005 21 1 -0.3634 -0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5138 24 1 1.6581 2.1325 -0.0004 25 1 4.1205 2.1325 0.0001 26 1 6.0228 -0.8872 2.2401 27 1 6.0228 0.8928 2.2381 28 1 8.3805 -0.8889 1.4734 29 1 8.3813 0.8910 1.4711 30 1 7.8877 0.8951 3.9008 31 1 7.8868 -0.8848 3.9038 32 1 12.0479 0.0080 5.9042 33 1 4.1206 -2.1323 -0.0062 34 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107943618.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:45 Heat of formation + Delta-G solvation = -34.185146 kcal Electronic energy + Delta-G solvation = -15412.321422 eV Core-core repulsion = 12822.018670 eV Total energy + Delta-G solvation = -2590.302752 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.34196 -35.52909 -34.53539 -33.05625 -32.05978 -31.10716 -28.06519 -27.27996 -23.26884 -22.90895 -21.74319 -20.20384 -18.04770 -16.75217 -16.50415 -15.62477 -15.34626 -14.78565 -14.62373 -14.11667 -14.02091 -13.89542 -13.60312 -12.83382 -12.70290 -12.39525 -12.31361 -12.07937 -11.86683 -11.51929 -11.25356 -11.11006 -10.82162 -10.48254 -9.93891 -9.76545 -9.50325 -9.19454 -9.11051 -9.07215 -8.53484 -8.11258 -6.03840 -4.01911 0.80039 1.22826 1.97893 2.87074 3.30192 3.37965 3.42219 3.52050 4.06113 4.45502 4.58298 4.61057 4.82389 5.04940 5.22507 5.24992 5.29687 5.41183 5.46724 5.49625 5.54027 5.75917 5.85922 6.09891 6.10313 6.18941 6.33449 6.39715 6.53837 6.78929 6.85413 7.27115 7.40586 7.79101 8.54043 9.01257 9.58649 11.09664 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.033171 B = 0.004265 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.910070 B = 6563.540733 C = 7030.093375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.059 4.059 3 C -0.139 4.139 4 C -0.050 4.050 5 C -0.461 4.461 6 S 1.315 4.685 7 O -0.857 6.857 8 C -0.443 4.443 9 C -0.085 4.085 10 C -0.008 4.008 11 C -0.522 4.522 12 H 0.073 0.927 13 C 0.066 3.934 14 N -0.903 5.903 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.267 1.267 19 C -0.041 4.041 20 C -0.141 4.141 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.121 0.879 25 H 0.126 0.874 26 H 0.111 0.889 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.014 0.986 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.137 0.863 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.655 -5.228 -10.975 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.059 4.059 3 C -0.158 4.158 4 C -0.069 4.069 5 C -0.556 4.556 6 S 1.514 4.486 7 O -0.852 6.852 8 C -0.581 4.581 9 C -0.124 4.124 10 C -0.047 4.047 11 C -0.560 4.560 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.542 5.542 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.192 1.192 19 C -0.061 4.061 20 C -0.160 4.160 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.139 0.861 25 H 0.144 0.856 26 H 0.129 0.871 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.155 0.845 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.927 -5.195 -11.646 24.506 hybrid contribution -1.527 1.854 2.115 3.200 sum -22.454 -3.341 -9.530 24.620 Atomic orbital electron populations 1.20861 0.91126 1.03002 1.02509 1.20097 0.96099 0.93421 0.96331 1.21130 0.94354 0.97670 1.02669 1.21163 0.94326 0.97881 0.93575 1.27966 1.20154 0.96959 1.10540 1.69413 0.80909 1.09541 0.88732 1.93083 1.77937 1.44798 1.69397 1.27822 1.05076 1.07157 1.18030 1.21132 0.88607 1.01806 1.00883 1.19565 0.97465 0.96358 0.91322 1.21175 0.90035 1.50782 0.94033 0.90853 1.25029 0.94863 0.94585 0.99017 1.69912 1.10162 1.51179 1.22990 0.86780 0.81307 0.78500 0.82714 1.20187 1.21381 1.19176 1.20881 0.93991 0.96764 0.94419 1.21146 0.94551 0.97516 1.02766 0.90869 0.91250 0.91434 0.86070 0.85579 0.87099 0.90031 0.91441 0.92313 0.96809 0.96741 0.92730 0.84487 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.01 36.00 0.36 -0.46 16 2 C -0.06 -0.59 5.88 -104.63 -0.62 -1.21 16 3 C -0.14 -1.61 9.70 -39.58 -0.38 -1.99 16 4 C -0.05 -0.69 9.44 -39.58 -0.37 -1.07 16 5 C -0.46 -5.73 5.61 -39.58 -0.22 -5.95 16 6 S 1.31 17.09 13.55 -107.50 -1.46 15.63 16 7 O -0.86 -16.36 16.90 -35.23 -0.60 -16.95 16 8 C -0.44 -6.88 5.88 37.16 0.22 -6.66 16 9 C -0.09 -1.67 5.16 -26.73 -0.14 -1.81 16 10 C -0.01 -0.20 4.04 -27.88 -0.11 -0.32 16 11 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 12 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 15 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 19 C -0.04 -0.40 9.75 -39.58 -0.39 -0.79 16 20 C -0.14 -1.31 9.70 -39.59 -0.38 -1.70 16 21 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 23 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 24 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 25 H 0.13 1.90 7.45 -52.49 -0.39 1.51 16 26 H 0.11 1.44 8.14 -51.92 -0.42 1.02 16 27 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 31 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 302.52 15.07 4.56 4.56 Total: -1.00 -36.97 302.52 -8.82 -45.80 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -4.97 Total: -3.46 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: -2.47 Total: -35.52 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: 0.77 Total: -27.38 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.60 Total: -16.95 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Atomic # 16 Polarization: 17.09 SS G_CDS: -1.46 Total: 15.63 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -36.97 -8.82 -45.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107943618.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.610 kcal (2) G-P(sol) polarization free energy of solvation -36.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds