Wall clock time and date at job start Sun Mar 29 2020 22:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 119.99730 * 2 1 4 4 C 1.38205 * 120.00143 * 179.97438 * 3 2 1 5 5 C 1.38265 * 120.00044 * 359.96152 * 4 3 2 6 6 C 1.38211 * 119.99642 * 359.97438 * 5 4 3 7 7 S 1.76199 * 119.99998 * 180.02562 * 6 5 4 8 8 O 1.42100 * 103.00449 * 203.85539 * 7 6 5 9 9 C 1.81405 * 102.99935 * 89.99988 * 7 6 5 10 10 C 1.52999 * 109.46897 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47262 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00230 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99950 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00047 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99911 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47410 * 59.99826 * 16 14 12 18 18 H 1.48497 * 109.47247 * 180.02562 * 16 14 12 19 19 H 1.48512 * 109.46956 * 299.99768 * 16 14 12 20 20 C 1.38211 * 120.00152 * 179.72671 * 2 1 3 21 21 H 1.08999 * 109.47015 * 90.00126 * 1 2 3 22 22 H 1.09000 * 109.46646 * 209.99278 * 1 2 3 23 23 H 1.09000 * 109.47248 * 329.99996 * 1 2 3 24 24 H 1.07999 * 120.00073 * 359.97438 * 3 2 1 25 25 H 1.07996 * 120.00462 * 179.97438 * 4 3 2 26 26 H 1.08001 * 119.99957 * 180.02562 * 5 4 3 27 27 H 1.08995 * 109.47039 * 299.99990 * 9 7 6 28 28 H 1.08993 * 109.46795 * 60.00160 * 9 7 6 29 29 H 1.08995 * 109.47178 * 299.99795 * 10 9 7 30 30 H 1.09002 * 109.47461 * 60.00613 * 10 9 7 31 31 H 1.09006 * 109.47135 * 300.00263 * 11 10 9 32 32 H 1.09006 * 109.47031 * 59.99880 * 11 10 9 33 33 H 0.97007 * 119.99859 * 180.02562 * 15 14 12 34 34 H 1.08004 * 119.99891 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2718 0.0001 0.0019 6 6 3.5807 -1.1968 0.0032 7 16 4.4617 -2.7228 0.0056 8 8 3.5252 -3.6336 -0.5535 9 6 4.6651 -3.0738 1.7737 10 6 5.4257 -4.3898 1.9482 11 6 5.5967 -4.6862 3.4395 12 6 6.3453 -5.9827 3.6113 13 1 6.6674 -6.5394 2.7438 14 6 6.6191 -6.4581 4.8763 15 7 6.2265 -5.7805 5.9327 16 14 7.5477 -8.0649 5.0893 17 1 8.8839 -7.9528 4.4512 18 1 7.7125 -8.3533 6.5367 19 1 6.7844 -9.1664 4.4494 20 6 2.1981 -1.1969 0.0057 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3632 -0.8901 0.5137 23 1 -0.3634 0.8900 0.5138 24 1 1.6583 2.1326 -0.0004 25 1 4.1203 2.1327 0.0001 26 1 5.3518 0.0002 0.0027 27 1 5.2261 -2.2654 2.2424 28 1 3.6847 -3.1553 2.2430 29 1 4.8650 -5.1984 1.4794 30 1 6.4062 -4.3077 1.4790 31 1 6.1572 -3.8775 3.9087 32 1 4.6161 -4.7683 3.9083 33 1 6.4195 -6.1149 6.8227 34 1 1.6581 -2.1322 0.0098 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108099866.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:56 Heat of formation + Delta-G solvation = -37.782630 kcal Electronic energy + Delta-G solvation = -15428.968368 eV Core-core repulsion = 12838.509617 eV Total energy + Delta-G solvation = -2590.458751 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.27353 -35.46259 -34.40127 -32.94335 -31.99737 -31.10822 -27.46828 -27.09434 -23.56055 -22.86500 -21.74777 -20.23758 -17.60395 -16.78580 -16.26587 -15.58004 -15.42479 -14.60279 -14.54051 -14.30937 -14.11216 -13.84317 -13.23034 -12.60204 -12.39301 -12.28640 -12.25900 -11.92919 -11.75124 -11.35442 -11.19835 -10.83311 -10.74885 -10.67234 -10.12337 -9.77097 -9.36111 -9.22080 -9.05459 -8.82130 -8.34293 -8.04458 -5.99235 -4.02092 0.88704 1.25807 2.04655 2.93569 3.34643 3.38747 3.41589 3.58353 4.11743 4.47005 4.67873 4.72542 4.93783 5.14501 5.22703 5.36271 5.40019 5.42033 5.56580 5.61517 5.67105 5.84094 5.96156 6.22212 6.22765 6.23566 6.39024 6.53795 6.73204 6.84556 7.06265 7.67221 7.80269 8.00202 8.41748 9.04787 9.62019 11.11962 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.038563 B = 0.003929 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.915419 B = 7124.039614 C = 7216.741646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.105 4.105 3 C -0.093 4.093 4 C -0.135 4.135 5 C -0.052 4.052 6 C -0.449 4.449 7 S 1.309 4.691 8 O -0.858 6.858 9 C -0.436 4.436 10 C -0.093 4.093 11 C 0.027 3.973 12 C -0.523 4.523 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.056 4.056 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.136 0.864 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.014 0.986 33 H 0.261 0.739 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 15.855 -12.880 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.106 4.106 3 C -0.112 4.112 4 C -0.154 4.154 5 C -0.071 4.071 6 C -0.545 4.545 7 S 1.509 4.491 8 O -0.854 6.854 9 C -0.574 4.574 10 C -0.132 4.132 11 C -0.011 4.011 12 C -0.562 4.562 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.721 3.279 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.074 4.074 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.140 0.860 25 H 0.144 0.856 26 H 0.154 0.846 27 H 0.129 0.871 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.997 15.329 -13.492 20.808 hybrid contribution -1.617 -0.786 1.481 2.330 sum -5.614 14.543 -12.011 19.679 Atomic orbital electron populations 1.20800 0.91145 1.02860 1.02336 1.20040 0.96252 0.93361 1.00970 1.21169 0.94582 0.97316 0.98083 1.21249 0.94330 0.98326 1.01526 1.20878 0.99922 0.90925 0.95375 1.27988 1.02312 1.14725 1.09433 1.69354 1.09093 0.81376 0.89292 1.93073 1.63660 1.58968 1.69708 1.27761 1.06324 1.06121 1.17231 1.21319 0.97813 0.91740 1.02359 1.19088 0.97011 0.96571 0.88468 1.21244 1.36029 1.06764 0.92128 0.92561 1.25029 0.95995 0.97351 0.96067 1.69959 1.46764 1.38871 0.97968 0.86642 0.80410 0.83954 0.76913 1.20112 1.21310 1.20245 1.21068 0.93603 0.98016 0.94762 0.91183 0.91462 0.91512 0.86039 0.85556 0.84572 0.87079 0.90030 0.92920 0.92035 0.96261 0.96766 0.92948 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 2 C -0.11 -1.27 5.88 -104.62 -0.62 -1.89 16 3 C -0.09 -0.97 9.70 -39.59 -0.38 -1.35 16 4 C -0.14 -1.31 10.05 -39.58 -0.40 -1.71 16 5 C -0.05 -0.53 9.75 -39.58 -0.39 -0.92 16 6 C -0.45 -5.90 5.61 -39.58 -0.22 -6.12 16 7 S 1.31 17.85 13.55 -107.50 -1.46 16.40 16 8 O -0.86 -16.83 16.90 -35.23 -0.60 -17.42 16 9 C -0.44 -7.26 5.88 37.16 0.22 -7.04 16 10 C -0.09 -1.91 5.16 -26.73 -0.14 -2.05 16 11 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 12 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 16 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 C -0.06 -0.80 9.10 -39.58 -0.36 -1.16 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 23 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 24 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 25 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 26 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 27 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.13 2.00 7.46 -52.48 -0.39 1.61 16 LS Contribution 306.13 15.07 4.61 4.61 Total: -1.00 -36.44 306.13 -9.20 -45.64 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -5.00 Total: -3.35 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: -2.47 Total: -36.17 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.60 Total: -17.42 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 17.85 SS G_CDS: -1.46 Total: 16.40 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -36.44 -9.20 -45.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108099866.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.854 kcal (2) G-P(sol) polarization free energy of solvation -36.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds