Wall clock time and date at job start Sun Mar 29 2020 22:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 119.99730 * 2 1 4 4 C 1.38205 * 120.00143 * 179.97438 * 3 2 1 5 5 C 1.38265 * 120.00044 * 359.96152 * 4 3 2 6 6 C 1.38211 * 119.99642 * 359.97438 * 5 4 3 7 7 S 1.76199 * 119.99998 * 180.02562 * 6 5 4 8 8 O 1.42100 * 103.00449 * 203.85539 * 7 6 5 9 9 C 1.81405 * 102.99935 * 89.99988 * 7 6 5 10 10 C 1.52999 * 109.46897 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47262 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00230 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99950 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00047 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99911 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47410 * 59.99826 * 16 14 12 18 18 H 1.48497 * 109.47247 * 180.02562 * 16 14 12 19 19 H 1.48512 * 109.46956 * 299.99768 * 16 14 12 20 20 C 1.38211 * 120.00152 * 179.72671 * 2 1 3 21 21 H 1.08999 * 109.47015 * 90.00126 * 1 2 3 22 22 H 1.09000 * 109.46646 * 209.99278 * 1 2 3 23 23 H 1.09000 * 109.47248 * 329.99996 * 1 2 3 24 24 H 1.07999 * 120.00073 * 359.97438 * 3 2 1 25 25 H 1.07996 * 120.00462 * 179.97438 * 4 3 2 26 26 H 1.08001 * 119.99957 * 180.02562 * 5 4 3 27 27 H 1.08995 * 109.47039 * 299.99990 * 9 7 6 28 28 H 1.08993 * 109.46795 * 60.00160 * 9 7 6 29 29 H 1.08995 * 109.47178 * 299.99795 * 10 9 7 30 30 H 1.09002 * 109.47461 * 60.00613 * 10 9 7 31 31 H 1.09006 * 109.47135 * 300.00263 * 11 10 9 32 32 H 1.09006 * 109.47031 * 59.99880 * 11 10 9 33 33 H 0.97007 * 119.99859 * 180.02562 * 15 14 12 34 34 H 1.08004 * 119.99891 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2718 0.0001 0.0019 6 6 3.5807 -1.1968 0.0032 7 16 4.4617 -2.7228 0.0056 8 8 3.5252 -3.6336 -0.5535 9 6 4.6651 -3.0738 1.7737 10 6 5.4257 -4.3898 1.9482 11 6 5.5967 -4.6862 3.4395 12 6 6.3453 -5.9827 3.6113 13 1 6.6674 -6.5394 2.7438 14 6 6.6191 -6.4581 4.8763 15 7 6.2265 -5.7805 5.9327 16 14 7.5477 -8.0649 5.0893 17 1 8.8839 -7.9528 4.4512 18 1 7.7125 -8.3533 6.5367 19 1 6.7844 -9.1664 4.4494 20 6 2.1981 -1.1969 0.0057 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3632 -0.8901 0.5137 23 1 -0.3634 0.8900 0.5138 24 1 1.6583 2.1326 -0.0004 25 1 4.1203 2.1327 0.0001 26 1 5.3518 0.0002 0.0027 27 1 5.2261 -2.2654 2.2424 28 1 3.6847 -3.1553 2.2430 29 1 4.8650 -5.1984 1.4794 30 1 6.4062 -4.3077 1.4790 31 1 6.1572 -3.8775 3.9087 32 1 4.6161 -4.7683 3.9083 33 1 6.4195 -6.1149 6.8227 34 1 1.6581 -2.1322 0.0098 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108099866.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:56 Heat of formation + Delta-G solvation = -61.650300 kcal Electronic energy + Delta-G solvation = -15430.003348 eV Core-core repulsion = 12838.509617 eV Total energy + Delta-G solvation = -2591.493731 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.13040 -36.88559 -36.30985 -34.02264 -33.76158 -31.99531 -29.40117 -27.90451 -25.42361 -23.89817 -22.67887 -21.96716 -18.78519 -18.38761 -17.72364 -16.66982 -16.56184 -16.30578 -16.00924 -15.76137 -15.03304 -14.72265 -14.36994 -14.06897 -14.03854 -13.78437 -13.25576 -13.07749 -13.05748 -12.76086 -12.67429 -12.51091 -12.40631 -12.06264 -11.77413 -11.59360 -11.31618 -10.85402 -10.56085 -10.15735 -9.69085 -9.33063 -8.20608 -6.32675 -0.06858 0.38868 0.94901 1.40328 1.43962 1.51763 1.81103 2.41250 2.66850 2.94970 3.12218 3.83256 3.95669 4.06277 4.14021 4.18920 4.37725 4.45082 4.60914 4.63249 4.67068 4.85019 4.85754 4.96404 5.14803 5.18852 5.19536 5.33190 5.41932 5.49415 5.53769 5.69033 5.82849 6.02780 6.22366 6.84183 7.36910 8.90932 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.038563 B = 0.003929 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.915419 B = 7124.039614 C = 7216.741646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C -0.092 4.092 4 C -0.132 4.132 5 C -0.047 4.047 6 C -0.470 4.470 7 S 1.394 4.606 8 O -0.921 6.921 9 C -0.444 4.444 10 C -0.088 4.088 11 C 0.027 3.973 12 C -0.548 4.548 13 H 0.064 0.936 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.259 1.259 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.093 4.093 21 H 0.078 0.922 22 H 0.053 0.947 23 H 0.088 0.912 24 H 0.152 0.848 25 H 0.166 0.834 26 H 0.180 0.820 27 H 0.137 0.863 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.093 0.907 31 H 0.007 0.993 32 H -0.025 1.025 33 H 0.264 0.736 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.640 17.864 -13.931 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.122 4.122 3 C -0.110 4.110 4 C -0.151 4.151 5 C -0.066 4.066 6 C -0.568 4.568 7 S 1.594 4.406 8 O -0.917 6.917 9 C -0.580 4.580 10 C -0.126 4.126 11 C -0.011 4.011 12 C -0.586 4.586 13 H 0.082 0.918 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.183 1.183 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.112 4.112 21 H 0.097 0.903 22 H 0.072 0.928 23 H 0.106 0.894 24 H 0.170 0.830 25 H 0.183 0.817 26 H 0.197 0.803 27 H 0.155 0.845 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.112 0.888 31 H 0.025 0.975 32 H -0.007 1.007 33 H 0.072 0.928 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.365 17.310 -14.539 22.729 hybrid contribution -2.194 -1.231 1.788 3.086 sum -4.559 16.079 -12.751 21.022 Atomic orbital electron populations 1.20845 0.90002 1.03277 1.03042 1.20324 0.97456 0.93312 1.01066 1.21622 0.95436 0.97580 0.96321 1.21784 0.94258 0.99606 0.99449 1.21441 1.02145 0.89813 0.93236 1.27766 1.01912 1.15157 1.11970 1.68516 1.07184 0.79897 0.85007 1.92940 1.65934 1.62086 1.70765 1.27823 1.04522 1.05038 1.20592 1.21140 0.99904 0.93244 0.98339 1.19022 0.94350 0.95708 0.92067 1.21736 1.36310 1.07857 0.92732 0.91795 1.26022 0.96893 1.01324 0.95681 1.70100 1.47984 1.40895 0.98535 0.85476 0.79466 0.78889 0.77088 1.18306 1.20825 1.19719 1.21052 0.94614 0.97890 0.97680 0.90311 0.92770 0.89357 0.83005 0.81668 0.80284 0.84459 0.92943 0.94831 0.88803 0.97456 1.00652 0.92753 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 10.01 71.24 0.71 -1.45 16 2 C -0.12 -2.83 5.88 -19.86 -0.12 -2.94 16 3 C -0.09 -1.61 9.70 22.27 0.22 -1.39 16 4 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 5 C -0.05 -0.81 9.75 22.27 0.22 -0.59 16 6 C -0.47 -11.93 5.61 22.27 0.12 -11.81 16 7 S 1.39 37.65 13.55 -56.49 -0.77 36.89 16 8 O -0.92 -37.53 16.90 -148.98 -2.52 -40.05 16 9 C -0.44 -14.99 5.88 71.98 0.42 -14.57 16 10 C -0.09 -3.66 5.16 30.60 0.16 -3.50 16 11 C 0.03 1.45 4.97 29.85 0.15 1.60 16 12 C -0.55 -31.91 9.11 25.60 0.23 -31.68 16 13 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 14 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 15 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 16 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 C -0.09 -2.77 9.10 22.27 0.20 -2.57 16 21 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.05 1.13 8.08 -2.39 -0.02 1.11 16 23 H 0.09 1.24 8.09 -2.39 -0.02 1.22 16 24 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 25 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 26 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 27 H 0.14 3.82 8.14 -2.39 -0.02 3.81 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 32 H -0.02 -1.52 8.14 -2.38 -0.02 -1.54 16 33 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 34 H 0.09 3.26 7.46 -2.91 -0.02 3.24 16 Total: -1.00 -83.01 306.13 3.09 -79.91 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 1.06 Total: 4.43 kcal Atomic # 6 Polarization: -73.30 SS G_CDS: 3.01 Total: -70.29 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.28 Total: -57.68 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -2.52 Total: -40.05 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 37.65 SS G_CDS: -0.77 Total: 36.89 kcal Total: -83.01 3.09 -79.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108099866.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.262 kcal (2) G-P(sol) polarization free energy of solvation -83.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds