Wall clock time and date at job start Sun Mar 29 2020 23:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48505 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47080 * 299.99913 * 3 2 1 6 6 H 1.48502 * 109.47342 * 59.99996 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21513 * 120.00315 * 359.72062 * 13 12 11 15 15 C 1.48160 * 119.99584 * 179.72357 * 13 12 11 16 16 C 1.39231 * 119.70779 * 179.72128 * 15 13 12 17 17 C 1.38657 * 119.12490 * 179.79611 * 16 15 13 18 18 C 1.38503 * 118.51758 * 0.47162 * 17 16 15 19 19 C 1.38895 * 119.33397 * 359.75159 * 18 17 16 20 20 F 1.35099 * 119.58402 * 179.97438 * 19 18 17 21 21 N 1.31701 * 120.83624 * 0.02562 * 19 18 17 22 22 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 24 24 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 25 25 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 26 26 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 27 27 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 28 28 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 29 29 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 30 30 H 1.08008 * 120.43218 * 0.02928 * 16 15 13 31 31 H 1.07998 * 120.74598 * 180.22890 * 17 16 15 32 32 H 1.08005 * 120.33084 * 179.77334 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9833 -7.3712 -0.0086 14 8 0.7886 -7.5934 -0.0087 15 6 2.9461 -8.4973 -0.0151 16 6 2.4755 -9.8076 -0.0156 17 6 3.3872 -10.8522 -0.0261 18 6 4.7389 -10.5501 -0.0257 19 6 5.1389 -9.2200 -0.0202 20 9 6.4561 -8.9196 -0.0193 21 7 4.2504 -8.2479 -0.0148 22 1 -0.4851 0.8400 0.0004 23 1 0.6248 -2.5563 -0.8919 24 1 0.6241 -2.5575 0.8881 25 1 2.8714 -3.6047 0.8890 26 1 2.8727 -3.6038 -0.8910 27 1 0.8541 -5.0447 -0.8923 28 1 0.8534 -5.0450 0.8877 29 1 3.3862 -5.9232 -0.0026 30 1 1.4141 -10.0077 -0.0117 31 1 3.0510 -11.8785 -0.0304 32 1 5.4745 -11.3409 -0.0301 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122997476.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:08 Heat of formation + Delta-G solvation = -56.498623 kcal Electronic energy + Delta-G solvation = -17070.030162 eV Core-core repulsion = 13944.839400 eV Total energy + Delta-G solvation = -3125.190762 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.34971 -40.80034 -38.92852 -35.51739 -33.60119 -33.01413 -31.57760 -30.94759 -27.05644 -25.08101 -23.82952 -22.91364 -20.90718 -20.45576 -18.45343 -17.91937 -16.57218 -16.49320 -16.48849 -16.11754 -15.46637 -15.40002 -14.44108 -14.30147 -14.12584 -13.85922 -13.53125 -13.14412 -12.67203 -12.28540 -11.83911 -11.74818 -10.91366 -10.82063 -10.63613 -10.55175 -10.54203 -9.96106 -9.86589 -9.46854 -9.41135 -9.10021 -8.83492 -8.36503 -6.01026 -4.03816 0.15236 0.61903 2.49951 2.90797 3.26731 3.31258 3.38808 3.42995 3.45547 3.97252 4.39338 4.44667 4.49395 4.53840 4.92655 5.28600 5.34989 5.36607 5.56157 5.70168 5.75681 6.08746 6.14692 6.39876 6.59371 6.78939 6.99641 7.01548 7.63512 7.64607 7.76570 7.97861 8.19395 8.39446 9.03045 9.60475 11.10333 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.036839 B = 0.003525 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.873900 B = 7941.134722 C = 8675.249110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.113 3.887 12 N -0.700 5.700 13 C 0.562 3.438 14 O -0.531 6.531 15 C 0.123 3.877 16 C -0.125 4.125 17 C -0.052 4.052 18 C -0.176 4.176 19 C 0.308 3.692 20 F -0.109 7.109 21 N -0.490 5.490 22 H 0.260 0.740 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.410 0.590 30 H 0.159 0.841 31 H 0.154 0.846 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.682 -23.073 -0.050 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.009 4.009 12 N -0.350 5.350 13 C 0.345 3.655 14 O -0.408 6.408 15 C -0.015 4.015 16 C -0.146 4.146 17 C -0.078 4.078 18 C -0.197 4.197 19 C 0.152 3.848 20 F -0.088 7.088 21 N -0.208 5.208 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.246 0.754 30 H 0.177 0.823 31 H 0.172 0.828 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.980 -22.179 -0.043 23.571 hybrid contribution 1.023 0.296 -0.007 1.065 sum 9.003 -21.883 -0.050 23.663 Atomic orbital electron populations 1.69973 1.06056 1.26575 1.50732 1.25029 0.94860 0.99320 0.95284 0.86525 0.80095 0.83727 0.77580 1.19725 1.21009 1.21004 1.21250 0.93086 0.90908 1.50721 0.92540 1.19038 0.93826 0.90832 0.97693 1.21910 0.99817 0.93096 1.01175 1.21786 0.91811 0.84945 1.02341 1.46131 1.11943 1.05254 1.71673 1.17771 0.86997 0.82711 0.77978 1.90807 1.14984 1.84479 1.50538 1.21096 0.88234 0.94262 0.97913 1.22238 1.02860 0.91571 0.97889 1.21558 0.91503 1.00574 0.94135 1.22066 0.98314 0.95768 1.03593 1.18064 0.79243 0.89220 0.98243 1.91664 1.29548 1.94329 1.93220 1.66848 1.02576 1.37526 1.13834 0.92992 0.96208 0.96210 0.92547 0.92549 0.91302 0.91282 0.75425 0.82341 0.82795 0.82923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.44 5.27 -26.73 -0.14 -2.58 16 11 C 0.11 2.02 5.67 -4.04 -0.02 2.00 16 12 N -0.70 -10.92 5.55 -61.15 -0.34 -11.26 16 13 C 0.56 8.68 7.81 -12.19 -0.10 8.58 16 14 O -0.53 -9.51 16.32 5.35 0.09 -9.43 16 15 C 0.12 1.54 6.75 -83.01 -0.56 0.98 16 16 C -0.12 -1.16 9.63 -39.06 -0.38 -1.54 16 17 C -0.05 -0.33 10.16 -39.33 -0.40 -0.73 16 18 C -0.18 -1.22 10.09 -39.24 -0.40 -1.62 16 19 C 0.31 3.20 8.41 -17.36 -0.15 3.05 16 20 F -0.11 -1.16 17.29 2.25 0.04 -1.12 16 21 N -0.49 -6.15 9.56 -10.13 -0.10 -6.24 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 1.27 8.14 -51.92 -0.42 0.84 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.41 5.88 7.80 -40.82 -0.32 5.56 16 30 H 0.16 1.35 7.64 -52.48 -0.40 0.95 16 31 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 32 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 LS Contribution 292.64 15.07 4.41 4.41 Total: -1.00 -32.35 292.64 -6.51 -38.86 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -3.64 Total: -0.81 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -2.69 Total: -4.86 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.30 Total: -43.68 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.35 -6.51 -38.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122997476.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.639 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds