Wall clock time and date at job start Sun Mar 29 2020 23:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99702 * 2 1 4 4 H 1.48501 * 109.47042 * 269.99441 * 3 2 1 5 5 H 1.48491 * 109.47282 * 29.99937 * 3 2 1 6 6 H 1.48505 * 109.47057 * 149.99771 * 3 2 1 7 7 C 1.37873 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00447 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00116 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47388 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47255 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47284 * 179.97438 * 11 10 9 13 13 C 1.34772 * 119.99898 * 179.97438 * 12 11 10 14 14 O 1.21541 * 120.00327 * 0.02562 * 13 12 11 15 15 C 1.47853 * 119.99761 * 180.02562 * 13 12 11 16 16 C 1.39553 * 120.54537 * 0.02562 * 15 13 12 17 17 N 1.31664 * 120.62313 * 179.97438 * 16 15 13 18 18 C 1.31935 * 121.90476 * 0.02562 * 17 16 15 19 19 C 1.38544 * 121.04729 * 359.97438 * 18 17 16 20 20 F 1.35101 * 120.37458 * 179.97438 * 19 18 17 21 21 C 1.38620 * 119.24637 * 359.97438 * 19 18 17 22 22 H 0.97003 * 119.99753 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.46792 * 59.99910 * 9 7 2 24 24 H 1.09003 * 109.47199 * 300.00582 * 9 7 2 25 25 H 1.09000 * 109.47091 * 60.00486 * 10 9 7 26 26 H 1.09003 * 109.47145 * 300.00272 * 10 9 7 27 27 H 1.09000 * 109.46772 * 60.00171 * 11 10 9 28 28 H 1.08995 * 109.47322 * 300.00420 * 11 10 9 29 29 H 0.97000 * 119.99638 * 0.02562 * 12 11 10 30 30 H 1.08003 * 119.69260 * 359.95507 * 16 15 13 31 31 H 1.08001 * 119.47771 * 179.97438 * 18 17 16 32 32 H 1.08001 * 120.85862 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5516 -2.6364 0.0001 12 7 6.0400 -4.0177 0.0009 13 6 7.3650 -4.2639 0.0005 14 8 8.1549 -3.3400 0.0001 15 6 7.8579 -5.6578 0.0007 16 6 6.9612 -6.7271 0.0007 17 7 7.3984 -7.9691 0.0003 18 6 8.6864 -8.2548 0.0005 19 6 9.6411 -7.2508 0.0005 20 9 10.9565 -7.5590 0.0012 21 6 9.2313 -5.9266 -0.0002 22 1 -0.4850 0.8401 -0.0004 23 1 3.8752 -0.6795 0.8895 24 1 3.8746 -0.6807 -0.8905 25 1 3.6580 -3.1505 -0.8897 26 1 3.6585 -3.1501 0.8903 27 1 5.9148 -2.1225 0.8901 28 1 5.9150 -2.1226 -0.8898 29 1 5.4096 -4.7549 0.0009 30 1 5.8985 -6.5342 0.0013 31 1 9.0016 -9.2878 0.0006 32 1 9.9532 -5.1233 -0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124842683.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:10 Heat of formation + Delta-G solvation = -80.163940 kcal Electronic energy + Delta-G solvation = -17041.638932 eV Core-core repulsion = 13915.421964 eV Total energy + Delta-G solvation = -3126.216967 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.10923 -41.71607 -40.11569 -37.08376 -35.23635 -33.86885 -33.37271 -32.05874 -29.05779 -26.15386 -24.80435 -24.26146 -22.30918 -21.69500 -19.48776 -18.89060 -18.51447 -18.02657 -17.20192 -17.05374 -16.82985 -16.69737 -16.17834 -15.55317 -15.00493 -14.94529 -14.76526 -14.47304 -14.34884 -13.82661 -13.64216 -13.47644 -12.73282 -12.69236 -12.01555 -11.79898 -11.58463 -11.49117 -11.30809 -11.16192 -10.74831 -10.72131 -10.31279 -10.09044 -8.28015 -6.31764 -0.67167 -0.19976 1.38191 1.40065 1.51297 1.61613 1.92194 2.37537 2.54065 2.83263 3.08153 3.13744 3.49887 3.56469 3.62129 3.94494 4.06369 4.21981 4.39105 4.50806 4.63022 4.73684 4.89965 4.90315 5.05748 5.28138 5.34326 5.50424 5.58061 5.66763 6.28972 6.38005 6.53635 6.77023 7.02209 7.33274 8.88400 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.053859 B = 0.003373 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.747865 B = 8299.508691 C = 8793.508124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.246 1.246 7 C -0.530 4.530 8 H 0.039 0.961 9 C -0.013 4.013 10 C -0.102 4.102 11 C 0.125 3.875 12 N -0.705 5.705 13 C 0.560 3.440 14 O -0.574 6.574 15 C -0.164 4.164 16 C 0.134 3.866 17 N -0.471 5.471 18 C 0.108 3.892 19 C 0.041 3.959 20 F -0.127 7.127 21 C -0.058 4.058 22 H 0.266 0.734 23 H 0.022 0.978 24 H 0.020 0.980 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.416 0.584 30 H 0.192 0.808 31 H 0.204 0.796 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.088 -16.263 0.012 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.170 1.170 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.140 4.140 11 C 0.002 3.998 12 N -0.356 5.356 13 C 0.347 3.653 14 O -0.455 6.455 15 C -0.169 4.169 16 C -0.024 4.024 17 N -0.178 5.178 18 C -0.050 4.050 19 C 0.019 3.981 20 F -0.105 7.105 21 C -0.086 4.086 22 H 0.074 0.926 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.254 0.746 30 H 0.209 0.791 31 H 0.221 0.779 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 18.908 -16.182 0.015 24.888 hybrid contribution 0.375 1.339 -0.021 1.391 sum 19.284 -14.843 -0.006 24.335 Atomic orbital electron populations 1.70061 1.08263 1.28093 1.52823 1.25984 0.95559 1.03445 0.94310 0.85709 0.79568 0.78557 0.79138 1.19313 1.21261 1.16960 1.21485 0.91983 0.93247 1.50045 0.94289 1.19476 0.93988 0.94768 0.96898 1.21505 0.91795 0.98179 1.02537 1.21412 0.94555 0.81864 1.01980 1.45868 1.06330 1.10051 1.73373 1.18210 0.82650 0.88194 0.76228 1.90781 1.56312 1.46672 1.51703 1.20750 0.94432 0.94238 1.07490 1.23477 1.01403 0.86306 0.91204 1.67906 1.15980 1.21733 1.12189 1.23663 0.87072 1.01214 0.93012 1.18664 0.79628 0.93880 1.05909 1.91560 1.31546 1.93474 1.93934 1.21866 0.96268 0.96628 0.93790 0.92563 0.96015 0.96138 0.91368 0.91391 0.91860 0.91783 0.74590 0.79086 0.77921 0.82650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.95 43.55 27.47 68.60 1.88 45.44 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 7 C -0.53 -29.27 9.66 25.60 0.25 -29.02 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 10 C -0.10 -3.40 5.27 30.59 0.16 -3.24 16 11 C 0.13 3.59 5.67 86.38 0.49 4.08 16 12 N -0.70 -15.94 5.51 -465.98 -2.57 -18.51 16 13 C 0.56 14.05 7.78 86.79 0.68 14.72 16 14 O -0.57 -19.00 16.42 -3.85 -0.06 -19.07 16 15 C -0.16 -3.15 5.89 -20.00 -0.12 -3.27 16 16 C 0.13 2.05 10.71 85.04 0.91 2.96 16 17 N -0.47 -7.43 10.34 -194.59 -2.01 -9.45 16 18 C 0.11 1.41 11.16 84.75 0.95 2.35 16 19 C 0.04 0.63 7.34 22.43 0.16 0.80 16 20 F -0.13 -2.03 17.28 44.97 0.78 -1.26 16 21 C -0.06 -1.09 9.70 22.78 0.22 -0.86 16 22 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 23 H 0.02 0.94 7.20 -2.38 -0.02 0.92 16 24 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 25 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.42 6.71 6.54 -92.71 -0.61 6.10 16 30 H 0.19 1.89 6.42 -2.91 -0.02 1.87 16 31 H 0.20 1.28 8.06 -2.91 -0.02 1.25 16 32 H 0.16 2.99 7.74 -2.91 -0.02 2.97 16 Total: -1.00 -70.09 286.81 3.09 -67.00 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 0.49 Total: 5.60 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 4.28 Total: -11.26 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -4.28 Total: -86.45 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.06 Total: -19.07 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.26 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.44 kcal Total: -70.09 3.09 -67.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124842683.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.165 kcal (2) G-P(sol) polarization free energy of solvation -70.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds