Wall clock time and date at job start Sun Mar 29 2020 23:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38202 * 120.02401 * 2 1 4 4 C 1.38233 * 120.10950 * 179.97438 * 3 2 1 5 5 C 1.38325 * 120.16249 * 0.02562 * 4 3 2 6 6 C 1.38235 * 120.05227 * 359.97438 * 5 4 3 7 7 F 1.35104 * 120.05887 * 179.97438 * 6 5 4 8 8 C 1.38792 * 120.02814 * 180.24574 * 2 1 3 9 9 N 1.39844 * 120.07617 * 0.02562 * 8 2 1 10 10 C 1.46906 * 110.99380 * 240.22731 * 9 8 2 11 11 C 1.50705 * 109.46504 * 179.97438 * 10 9 8 12 12 O 1.21287 * 120.00268 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99496 * 180.02562 * 11 10 9 14 14 C 1.37098 * 119.99580 * 180.02562 * 13 11 10 15 15 H 1.07993 * 120.00273 * 359.97438 * 14 13 11 16 16 C 1.38953 * 119.99429 * 179.97438 * 14 13 11 17 17 N 1.31406 * 120.00260 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99541 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47411 * 89.99878 * 18 16 14 20 20 H 1.48504 * 109.46947 * 210.00068 * 18 16 14 21 21 H 1.48501 * 109.47498 * 329.99691 * 18 16 14 22 22 H 1.09001 * 109.46445 * 90.00316 * 1 2 3 23 23 H 1.09002 * 109.47369 * 210.00033 * 1 2 3 24 24 H 1.08995 * 109.47392 * 330.00024 * 1 2 3 25 25 H 1.07996 * 119.94351 * 359.97438 * 3 2 1 26 26 H 1.07995 * 119.91419 * 180.02562 * 4 3 2 27 27 H 1.08000 * 119.97433 * 179.97438 * 5 4 3 28 28 H 1.00898 * 110.99747 * 116.28025 * 9 8 2 29 29 H 1.08996 * 109.47461 * 300.00356 * 10 9 8 30 30 H 1.09001 * 109.47115 * 60.00746 * 10 9 8 31 31 H 0.97000 * 120.00278 * 359.97438 * 13 11 10 32 32 H 0.97005 * 119.99987 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1966 0.0000 4 6 3.5808 1.1986 0.0005 5 6 4.2776 0.0037 0.0005 6 6 3.5927 -1.1970 0.0005 7 9 4.2732 -2.3642 0.0000 8 6 2.2015 -1.2016 -0.0052 9 7 1.5045 -2.4140 -0.0109 10 6 1.8321 -3.2151 1.1761 11 6 1.0635 -4.5107 1.1354 12 8 0.3167 -4.7440 0.2086 13 7 1.2060 -5.4102 2.1290 14 6 0.5071 -6.5891 2.0917 15 1 -0.1578 -6.7968 1.2665 16 6 0.6545 -7.5167 3.1158 17 7 1.4639 -7.2641 4.1196 18 14 -0.2972 -9.1233 3.0646 19 1 0.5048 -10.1513 2.3539 20 1 -0.5715 -9.5804 4.4507 21 1 -1.5815 -8.9154 2.3488 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6580 2.1315 -0.0004 26 1 4.1180 2.1355 0.0010 27 1 5.3576 0.0089 0.0005 28 1 1.6862 -2.9315 -0.8578 29 1 2.9013 -3.4266 1.1880 30 1 1.5615 -2.6606 2.0747 31 1 1.8035 -5.2238 2.8700 32 1 1.5665 -7.9115 4.8347 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162737213.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:14 Heat of formation + Delta-G solvation = -76.967866 kcal Electronic energy + Delta-G solvation = -17892.523486 eV Core-core repulsion = 14766.445111 eV Total energy + Delta-G solvation = -3126.078375 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.06323 -40.69725 -39.90095 -36.63820 -35.82938 -33.43569 -33.28719 -30.76550 -28.47192 -27.43766 -25.93591 -23.10818 -22.32243 -21.25384 -19.99149 -18.67985 -18.05645 -17.73357 -17.02945 -16.86053 -16.54000 -16.26412 -15.81605 -15.34078 -15.17865 -14.68844 -14.31868 -14.24126 -14.03742 -13.53747 -13.44347 -13.00375 -12.90084 -12.61162 -12.51625 -12.45363 -12.22322 -12.12288 -11.54985 -10.49935 -10.07375 -9.81104 -9.61324 -9.59101 -8.49828 -5.99755 0.11299 0.23690 1.36550 1.40763 1.54266 1.96505 2.26223 2.56445 2.78077 3.16086 3.20385 3.33934 3.80202 4.02686 4.14540 4.27171 4.33491 4.38194 4.40182 4.65554 4.74809 4.90911 5.02028 5.16260 5.35013 5.37631 5.41606 5.56723 5.69247 5.90753 5.98270 6.33940 6.53635 7.06923 7.48167 8.02421 8.67710 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.039217 B = 0.004642 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.812763 B = 6029.867043 C = 6398.817999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.045 4.045 3 C -0.119 4.119 4 C -0.082 4.082 5 C -0.156 4.156 6 C 0.038 3.962 7 F -0.154 7.154 8 C 0.035 3.965 9 N -0.623 5.623 10 C 0.064 3.936 11 C 0.441 3.559 12 O -0.619 6.619 13 N -0.569 5.569 14 C -0.337 4.337 15 H 0.081 0.919 16 C -0.012 4.012 17 N -0.920 5.920 18 Si 0.997 3.003 19 H -0.270 1.270 20 H -0.269 1.269 21 H -0.271 1.271 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.088 0.912 25 H 0.165 0.835 26 H 0.171 0.829 27 H 0.150 0.850 28 H 0.353 0.647 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.396 0.604 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.102 18.315 -4.809 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.046 4.046 3 C -0.137 4.137 4 C -0.100 4.100 5 C -0.176 4.176 6 C 0.016 3.984 7 F -0.133 7.133 8 C -0.061 4.061 9 N -0.255 5.255 10 C -0.067 4.067 11 C 0.228 3.772 12 O -0.505 6.505 13 N -0.206 5.206 14 C -0.466 4.466 15 H 0.099 0.901 16 C -0.212 4.212 17 N -0.561 5.561 18 Si 0.820 3.180 19 H -0.196 1.196 20 H -0.194 1.194 21 H -0.196 1.196 22 H 0.094 0.906 23 H 0.073 0.927 24 H 0.107 0.893 25 H 0.183 0.817 26 H 0.188 0.812 27 H 0.168 0.832 28 H 0.176 0.824 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.229 0.771 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.095 18.223 -4.976 19.329 hybrid contribution 1.045 -1.726 0.252 2.034 sum 5.140 16.497 -4.723 17.913 Atomic orbital electron populations 1.20680 0.89521 1.03091 1.02943 1.20043 0.97466 0.90687 0.96422 1.21483 0.94572 0.97763 0.99932 1.21449 0.94131 0.98050 0.96337 1.21377 1.01803 0.90726 1.03647 1.19021 0.90854 0.82291 1.06224 1.91429 1.80164 1.47517 1.94194 1.18985 0.88345 0.92533 1.06263 1.57557 1.59044 1.04081 1.04791 1.21627 0.98134 0.91947 0.94991 1.20527 0.86187 0.86579 0.83886 1.90483 1.43106 1.79795 1.37132 1.41906 1.40731 1.16352 1.21637 1.19711 1.23647 0.94988 1.08269 0.90061 1.26107 0.97951 1.02770 0.94358 1.69682 1.37375 1.38100 1.10925 0.84876 0.78252 0.76907 0.77969 1.19566 1.19359 1.19589 0.90556 0.92664 0.89302 0.81736 0.81169 0.83207 0.82360 0.91778 0.88116 0.77055 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.37 9.76 71.24 0.70 -1.68 16 2 C -0.05 -1.07 5.90 -19.74 -0.12 -1.18 16 3 C -0.12 -1.95 9.70 22.26 0.22 -1.73 16 4 C -0.08 -1.22 10.04 22.29 0.22 -0.99 16 5 C -0.16 -3.17 10.02 22.29 0.22 -2.94 16 6 C 0.04 1.05 6.99 22.48 0.16 1.21 16 7 F -0.15 -5.01 15.10 44.97 0.68 -4.33 16 8 C 0.04 1.05 5.58 38.21 0.21 1.26 16 9 N -0.62 -22.52 4.98 -342.01 -1.70 -24.22 16 10 C 0.06 2.52 5.84 85.56 0.50 3.02 16 11 C 0.44 22.34 7.82 87.66 0.69 23.03 16 12 O -0.62 -35.61 15.78 -3.05 -0.05 -35.66 16 13 N -0.57 -30.69 5.29 -306.98 -1.62 -32.31 16 14 C -0.34 -19.67 9.68 84.04 0.81 -18.86 16 15 H 0.08 5.02 7.16 -2.91 -0.02 5.00 16 16 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 17 N -0.92 -50.76 13.05 21.66 0.28 -50.48 16 18 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.05 1.60 7.46 -2.39 -0.02 1.58 16 24 H 0.09 1.45 8.09 -2.39 -0.02 1.43 16 25 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 26 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 27 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 28 H 0.35 13.51 8.46 -89.70 -0.76 12.75 16 29 H 0.06 2.45 6.06 -2.39 -0.01 2.44 16 30 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 31 H 0.40 20.41 7.90 -92.71 -0.73 19.68 16 32 H 0.28 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -69.32 285.77 3.37 -65.95 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: -0.32 Total: 34.53 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 4.08 Total: 0.95 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -3.04 Total: -107.02 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.05 Total: -35.66 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.68 Total: -4.33 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -69.32 3.37 -65.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162737213.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.019 kcal (2) G-P(sol) polarization free energy of solvation -69.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds