Wall clock time and date at job start Sun Mar 29 2020 22:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37843 * 120.06284 * 2 1 4 4 C 1.38650 * 120.12563 * 179.97438 * 3 2 1 5 5 F 1.35093 * 119.87527 * 179.97438 * 4 3 2 6 6 C 1.38691 * 120.24442 * 359.74291 * 4 3 2 7 7 C 1.37799 * 120.12882 * 0.50773 * 6 4 3 8 8 C 1.39688 * 120.06604 * 179.97438 * 2 1 3 9 9 C 1.47605 * 120.11934 * 0.04264 * 8 2 1 10 10 O 1.21487 * 119.99905 * 353.74388 * 9 8 2 11 11 O 1.34723 * 119.99802 * 173.73920 * 9 8 2 12 12 C 1.45199 * 117.00228 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47594 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.47357 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99673 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99964 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00085 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00005 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47331 * 90.00024 * 18 16 14 20 20 H 1.48499 * 109.47434 * 210.00272 * 18 16 14 21 21 H 1.48503 * 109.47126 * 329.99881 * 18 16 14 22 22 H 1.09004 * 109.46716 * 263.43209 * 1 2 3 23 23 H 1.08996 * 109.46790 * 23.43205 * 1 2 3 24 24 H 1.09001 * 109.46882 * 143.43580 * 1 2 3 25 25 H 1.07997 * 119.94054 * 359.95276 * 3 2 1 26 26 H 1.08007 * 119.93579 * 180.26080 * 6 4 3 27 27 H 1.07999 * 120.06668 * 179.76517 * 7 6 4 28 28 H 1.08997 * 109.46992 * 300.00742 * 12 11 9 29 29 H 1.09001 * 109.46536 * 60.00117 * 12 11 9 30 30 H 1.09000 * 109.47458 * 300.00870 * 13 12 11 31 31 H 1.09007 * 109.47080 * 59.99973 * 13 12 11 32 32 H 0.97006 * 119.99978 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1930 0.0000 4 6 3.5841 1.1945 0.0005 5 9 4.2557 2.3667 0.0000 6 6 4.2839 -0.0028 0.0065 7 6 3.6041 -1.2014 0.0013 8 6 2.2069 -1.2089 0.0005 9 6 1.4730 -2.4896 0.0002 10 8 0.2635 -2.4966 0.1140 11 8 2.1445 -3.6507 -0.1266 12 6 1.3581 -4.8713 -0.1181 13 6 2.2868 -6.0774 -0.2711 14 6 1.4707 -7.3443 -0.2617 15 1 0.3970 -7.2941 -0.1575 16 6 2.0949 -8.5674 -0.3861 17 7 3.4024 -8.6284 -0.5134 18 14 1.0832 -10.1376 -0.3752 19 1 0.6841 -10.4791 -1.7642 20 1 1.8935 -11.2446 0.1933 21 1 -0.1323 -9.9376 0.4542 22 1 -0.3633 -0.1176 1.0210 23 1 -0.3633 0.9429 -0.4087 24 1 -0.3633 -0.8254 -0.6122 25 1 1.6576 2.1283 -0.0008 26 1 5.3640 0.0042 0.0111 27 1 4.1501 -2.1332 0.0021 28 1 0.8160 -4.9477 0.8244 29 1 0.6482 -4.8517 -0.9450 30 1 2.8294 -6.0012 -1.2134 31 1 2.9966 -6.0967 0.5561 32 1 3.8416 -9.4890 -0.6006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178286657.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:05 Heat of formation + Delta-G solvation = -135.856349 kcal Electronic energy + Delta-G solvation = -17427.419969 eV Core-core repulsion = 14266.495246 eV Total energy + Delta-G solvation = -3160.924723 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.06286 -41.72724 -39.79766 -37.68054 -35.46252 -33.76955 -32.67897 -31.75970 -28.44550 -27.08520 -25.01463 -23.49404 -22.69775 -21.94231 -19.24124 -18.36909 -18.27547 -17.89622 -17.57990 -17.10284 -16.72122 -16.53744 -15.58487 -15.31421 -14.72895 -14.59410 -14.34364 -14.32175 -14.22562 -13.82281 -13.24656 -13.09509 -12.98048 -12.84496 -12.57954 -12.56186 -12.12716 -11.77272 -11.48118 -11.46443 -11.13903 -10.60954 -10.08340 -9.88883 -8.26904 -6.39970 -0.55757 0.10889 1.35995 1.41530 1.43429 1.54067 1.68460 2.40426 2.48384 3.02070 3.07812 3.54155 3.59767 3.74399 4.02031 4.15777 4.23248 4.25283 4.56533 4.61205 4.70797 4.76436 4.80659 4.96664 5.02242 5.16289 5.19908 5.38866 5.46968 5.56172 5.70087 5.75558 6.06635 6.67880 6.74295 7.29900 8.85649 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.043442 B = 0.003885 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.387654 B = 7205.413299 C = 7820.525779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.005 3.995 3 C -0.163 4.163 4 C 0.136 3.864 5 F -0.132 7.132 6 C -0.168 4.168 7 C -0.031 4.031 8 C -0.159 4.159 9 C 0.498 3.502 10 O -0.525 6.525 11 O -0.360 6.360 12 C 0.092 3.908 13 C 0.031 3.969 14 C -0.551 4.551 15 H 0.065 0.935 16 C 0.007 3.993 17 N -0.926 5.926 18 Si 0.973 3.027 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.263 1.263 22 H 0.080 0.920 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.172 0.828 26 H 0.168 0.832 27 H 0.151 0.849 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.647 20.163 1.000 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.004 3.996 3 C -0.181 4.181 4 C 0.116 3.884 5 F -0.110 7.110 6 C -0.186 4.186 7 C -0.049 4.049 8 C -0.160 4.160 9 C 0.345 3.655 10 O -0.417 6.417 11 O -0.277 6.277 12 C 0.019 3.981 13 C -0.007 4.007 14 C -0.588 4.588 15 H 0.083 0.917 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.796 3.204 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.187 1.187 22 H 0.099 0.901 23 H 0.112 0.888 24 H 0.093 0.907 25 H 0.189 0.811 26 H 0.185 0.815 27 H 0.168 0.832 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.025 0.975 31 H 0.026 0.974 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.828 20.043 1.013 20.085 hybrid contribution -0.138 -0.962 -0.010 0.972 sum -0.966 19.081 1.003 19.132 Atomic orbital electron populations 1.21136 0.88686 1.04203 1.03846 1.20005 0.97692 0.90177 0.91696 1.21164 0.92073 0.99437 1.05432 1.18085 0.90437 0.81336 0.98500 1.91533 1.80479 1.45756 1.93273 1.21330 1.02581 0.89938 1.04794 1.21467 0.92135 0.99583 0.91696 1.19170 0.94405 0.89725 1.12702 1.21568 0.86015 0.85197 0.72700 1.90747 1.15783 1.88151 1.47021 1.86547 1.42814 1.15562 1.82758 1.23187 0.93987 0.79758 1.01132 1.18984 0.94820 0.90178 0.96681 1.21376 0.94210 0.91440 1.51813 0.91658 1.25944 0.96165 1.03010 0.94080 1.70091 1.09967 1.26703 1.49779 0.85332 0.78507 0.77736 0.78788 1.19573 1.20430 1.18721 0.90108 0.88800 0.90692 0.81075 0.81492 0.83161 0.92044 0.92027 0.97463 0.97412 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 8.73 71.24 0.62 -1.97 16 2 C 0.00 0.11 5.91 -19.61 -0.12 -0.01 16 3 C -0.16 -2.87 9.64 22.27 0.21 -2.65 16 4 C 0.14 2.50 7.31 22.48 0.16 2.66 16 5 F -0.13 -2.39 17.26 44.97 0.78 -1.61 16 6 C -0.17 -3.13 10.01 22.27 0.22 -2.91 16 7 C -0.03 -0.72 9.61 22.53 0.22 -0.50 16 8 C -0.16 -4.37 5.87 -20.10 -0.12 -4.49 16 9 C 0.50 17.58 7.82 70.29 0.55 18.13 16 10 O -0.53 -19.91 13.13 19.88 0.26 -19.65 16 11 O -0.36 -14.41 9.49 -56.33 -0.53 -14.95 16 12 C 0.09 4.12 5.41 71.98 0.39 4.51 16 13 C 0.03 1.63 5.35 29.85 0.16 1.79 16 14 C -0.55 -31.02 9.11 25.60 0.23 -30.79 16 15 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 16 C 0.01 0.40 5.46 84.65 0.46 0.86 16 17 N -0.93 -55.09 13.29 21.45 0.28 -54.80 16 18 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 22 H 0.08 1.71 8.14 -2.38 -0.02 1.70 16 23 H 0.09 1.35 8.04 -2.39 -0.02 1.33 16 24 H 0.07 2.00 5.85 -2.39 -0.01 1.98 16 25 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 26 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 27 H 0.15 3.56 7.62 -2.91 -0.02 3.54 16 28 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.01 0.39 8.14 -2.39 -0.02 0.38 16 31 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -64.32 288.65 6.94 -57.38 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.13 Total: 3.66 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 3.00 Total: -15.36 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.28 Total: -54.80 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.27 Total: -34.60 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -64.32 6.94 -57.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178286657.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.480 kcal (2) G-P(sol) polarization free energy of solvation -64.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds