Wall clock time and date at job start Sun Mar 29 2020 23:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47207 * 2 1 4 4 H 1.08999 * 109.46868 * 55.00595 * 3 2 1 5 5 C 1.50699 * 109.47061 * 175.00067 * 3 2 1 6 6 H 1.07999 * 120.00056 * 120.00101 * 5 3 2 7 7 C 1.37880 * 120.00172 * 300.00389 * 5 3 2 8 8 N 1.31513 * 119.99809 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00169 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47042 * 59.99734 * 9 7 5 11 11 H 1.48496 * 109.47178 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46771 * 299.99985 * 9 7 5 13 13 O 1.45202 * 109.46961 * 295.00042 * 3 2 1 14 14 C 1.34710 * 116.99623 * 90.00461 * 13 3 2 15 15 O 1.21473 * 120.00082 * 359.97438 * 14 13 3 16 16 C 1.47734 * 119.99759 * 180.27325 * 14 13 3 17 17 C 1.39644 * 120.13855 * 359.44513 * 16 14 13 18 18 C 1.37928 * 119.90123 * 179.69835 * 17 16 14 19 19 C 1.38350 * 120.17562 * 0.58107 * 18 17 16 20 20 C 1.38558 * 120.28301 * 359.71729 * 19 18 17 21 21 F 1.35097 * 119.95631 * 180.02562 * 20 19 18 22 22 C 1.38203 * 120.09184 * 359.97438 * 20 19 18 23 23 H 1.09000 * 109.46843 * 299.99589 * 1 2 3 24 24 H 1.09000 * 109.47031 * 59.99386 * 1 2 3 25 25 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46843 * 240.00411 * 2 1 3 27 27 H 1.09000 * 109.47031 * 120.00614 * 2 1 3 28 28 H 0.96997 * 120.00100 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.05093 * 359.97294 * 17 16 14 30 30 H 1.07996 * 119.91513 * 180.27787 * 18 17 16 31 31 H 1.08002 * 119.85784 * 179.73988 * 19 18 17 32 32 H 1.07997 * 120.08437 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3364 2.1727 9 14 6.0051 0.8798 1.3810 10 1 6.5006 2.2797 1.3807 11 1 6.3980 0.2154 2.6496 12 1 6.5966 0.1450 0.2341 13 8 1.6559 2.0917 -1.2407 14 6 0.4685 2.7278 -1.2559 15 8 -0.2271 2.7394 -0.2601 16 6 0.0094 3.4056 -2.4857 17 6 0.8091 3.3985 -3.6304 18 6 0.3729 4.0275 -4.7778 19 6 -0.8494 4.6756 -4.7938 20 6 -1.6461 4.6925 -3.6604 21 9 -2.8387 5.3269 -3.6835 22 6 -1.2230 4.0605 -2.5064 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8293 -0.0614 2.9497 29 1 1.7658 2.8975 -3.6188 30 1 0.9892 4.0184 -5.6646 31 1 -1.1840 5.1701 -5.6938 32 1 -1.8443 4.0734 -1.6232 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188091468.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:00 Heat of formation + Delta-G solvation = -116.877556 kcal Electronic energy + Delta-G solvation = -18090.780472 eV Core-core repulsion = 14930.678731 eV Total energy + Delta-G solvation = -3160.101740 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.98110 -39.97685 -38.39100 -35.80746 -33.56225 -31.61322 -31.16800 -30.56619 -27.34828 -24.59179 -23.08000 -22.65181 -20.96518 -19.64567 -18.09256 -16.81869 -16.53197 -16.21414 -15.87600 -15.72433 -15.24698 -15.20755 -14.52598 -13.97052 -13.34472 -13.04968 -12.85936 -12.57363 -12.01620 -11.97657 -11.57914 -11.47251 -11.22831 -11.21935 -10.97408 -10.69226 -10.32605 -9.87484 -9.73509 -9.42252 -9.22358 -8.86422 -8.84061 -8.48335 -6.21319 -4.28906 0.66668 1.08635 2.89268 3.24334 3.27084 3.29251 3.44005 3.79048 4.18421 4.31059 4.69692 4.74394 5.09723 5.10563 5.17612 5.29279 5.70619 5.90634 5.99031 6.18181 6.20898 6.25322 6.29694 6.43545 6.70665 6.83369 6.92662 7.13172 7.18479 7.57359 7.69551 7.88279 8.11074 8.54534 8.82500 9.36277 10.85428 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.034277 B = 0.005233 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.677062 B = 5349.551606 C = 5808.510029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.049 0.951 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.348 6.348 14 C 0.495 3.505 15 O -0.507 6.507 16 C -0.083 4.083 17 C -0.073 4.073 18 C -0.105 4.105 19 C -0.131 4.131 20 C 0.083 3.917 21 F -0.139 7.139 22 C -0.098 4.098 23 H 0.053 0.947 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.110 0.890 28 H 0.267 0.733 29 H 0.149 0.851 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 5.514 -12.121 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.264 6.264 14 C 0.338 3.662 15 O -0.398 6.398 16 C -0.084 4.084 17 C -0.091 4.091 18 C -0.123 4.123 19 C -0.150 4.150 20 C 0.064 3.936 21 F -0.117 7.117 22 C -0.117 4.117 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.128 0.872 28 H 0.077 0.923 29 H 0.167 0.833 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.194 5.402 -11.604 14.219 hybrid contribution 0.599 0.037 0.270 0.658 sum -5.594 5.439 -11.334 13.760 Atomic orbital electron populations 1.21871 0.98368 0.99116 1.00760 1.22030 0.92642 0.99241 1.03468 1.20746 0.95106 0.88791 0.78382 0.93366 1.20983 0.89507 1.39238 1.06368 0.91315 1.24879 0.99261 0.94691 0.95023 1.69876 1.35525 1.37626 1.09463 0.86332 0.83800 0.78497 0.77503 1.19979 1.21018 1.19921 1.86521 1.33283 1.62209 1.44355 1.20804 0.81294 0.77045 0.87013 1.90790 1.55523 1.58373 1.35120 1.19273 0.94987 1.00461 0.93689 1.21695 0.99974 0.96246 0.91213 1.21031 0.95431 0.97193 0.98664 1.21348 0.95131 1.00894 0.97584 1.17449 0.83001 0.97977 0.95151 1.91506 1.43270 1.79885 1.97064 1.21245 0.96214 0.96142 0.98052 0.92765 0.94988 0.94715 0.93879 0.87228 0.92272 0.83310 0.84246 0.84447 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.56 37.16 0.32 -2.82 16 2 C -0.14 -3.32 5.49 -26.73 -0.15 -3.47 16 3 C 0.22 5.78 2.25 -27.88 -0.06 5.72 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.29 8.90 -34.44 -0.31 -14.60 16 6 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.67 11.29 55.43 0.63 -24.05 16 9 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 O -0.35 -8.00 9.06 -40.52 -0.37 -8.37 16 14 C 0.49 10.31 6.35 34.61 0.22 10.53 16 15 O -0.51 -11.69 13.53 -19.25 -0.26 -11.95 16 16 C -0.08 -1.35 5.87 -104.99 -0.62 -1.96 16 17 C -0.07 -0.98 9.61 -39.17 -0.38 -1.36 16 18 C -0.11 -1.08 10.03 -39.65 -0.40 -1.48 16 19 C -0.13 -1.36 10.02 -39.42 -0.39 -1.75 16 20 C 0.08 1.06 7.29 -39.48 -0.29 0.77 16 21 F -0.14 -1.77 17.26 2.25 0.04 -1.74 16 22 C -0.10 -1.43 9.57 -39.09 -0.37 -1.81 16 23 H 0.05 1.24 7.79 -51.93 -0.40 0.83 16 24 H 0.03 0.67 6.06 -51.93 -0.31 0.36 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 29 H 0.15 1.96 7.61 -52.48 -0.40 1.56 16 30 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.15 2.20 7.65 -52.49 -0.40 1.80 16 LS Contribution 281.98 15.07 4.25 4.25 Total: -1.00 -29.21 281.98 -6.69 -35.90 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -3.44 Total: 0.92 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.52 Total: -10.60 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.63 Total: -24.05 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.63 Total: -20.32 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.21 -6.69 -35.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188091468.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.977 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds