Wall clock time and date at job start Sun Mar 29 2020 23:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47207 * 2 1 4 4 H 1.08999 * 109.46868 * 55.00595 * 3 2 1 5 5 C 1.50699 * 109.47061 * 175.00067 * 3 2 1 6 6 H 1.07999 * 120.00056 * 120.00101 * 5 3 2 7 7 C 1.37880 * 120.00172 * 300.00389 * 5 3 2 8 8 N 1.31513 * 119.99809 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00169 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47042 * 59.99734 * 9 7 5 11 11 H 1.48496 * 109.47178 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46771 * 299.99985 * 9 7 5 13 13 O 1.45202 * 109.46961 * 295.00042 * 3 2 1 14 14 C 1.34710 * 116.99623 * 90.00461 * 13 3 2 15 15 O 1.21473 * 120.00082 * 359.97438 * 14 13 3 16 16 C 1.47734 * 119.99759 * 180.27325 * 14 13 3 17 17 C 1.39644 * 120.13855 * 359.44513 * 16 14 13 18 18 C 1.37928 * 119.90123 * 179.69835 * 17 16 14 19 19 C 1.38350 * 120.17562 * 0.58107 * 18 17 16 20 20 C 1.38558 * 120.28301 * 359.71729 * 19 18 17 21 21 F 1.35097 * 119.95631 * 180.02562 * 20 19 18 22 22 C 1.38203 * 120.09184 * 359.97438 * 20 19 18 23 23 H 1.09000 * 109.46843 * 299.99589 * 1 2 3 24 24 H 1.09000 * 109.47031 * 59.99386 * 1 2 3 25 25 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46843 * 240.00411 * 2 1 3 27 27 H 1.09000 * 109.47031 * 120.00614 * 2 1 3 28 28 H 0.96997 * 120.00100 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.05093 * 359.97294 * 17 16 14 30 30 H 1.07996 * 119.91513 * 180.27787 * 18 17 16 31 31 H 1.08002 * 119.85784 * 179.73988 * 19 18 17 32 32 H 1.07997 * 120.08437 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3364 2.1727 9 14 6.0051 0.8798 1.3810 10 1 6.5006 2.2797 1.3807 11 1 6.3980 0.2154 2.6496 12 1 6.5966 0.1450 0.2341 13 8 1.6559 2.0917 -1.2407 14 6 0.4685 2.7278 -1.2559 15 8 -0.2271 2.7394 -0.2601 16 6 0.0094 3.4056 -2.4857 17 6 0.8091 3.3985 -3.6304 18 6 0.3729 4.0275 -4.7778 19 6 -0.8494 4.6756 -4.7938 20 6 -1.6461 4.6925 -3.6604 21 9 -2.8387 5.3269 -3.6835 22 6 -1.2230 4.0605 -2.5064 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8293 -0.0614 2.9497 29 1 1.7658 2.8975 -3.6188 30 1 0.9892 4.0184 -5.6646 31 1 -1.1840 5.1701 -5.6938 32 1 -1.8443 4.0734 -1.6232 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188091468.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:00 Heat of formation + Delta-G solvation = -132.306608 kcal Electronic energy + Delta-G solvation = -18091.449526 eV Core-core repulsion = 14930.678731 eV Total energy + Delta-G solvation = -3160.770794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.97878 -41.55720 -39.61879 -37.60925 -35.52829 -33.43446 -32.40792 -31.62802 -29.33012 -26.05701 -24.88676 -23.67467 -22.54099 -21.43172 -19.53072 -18.64255 -18.07761 -17.26595 -17.20475 -16.98755 -16.82493 -16.62320 -16.23382 -15.03350 -14.83836 -14.76502 -14.25584 -14.15217 -13.46601 -13.33250 -13.28012 -13.11146 -12.95627 -12.80479 -12.59536 -12.38843 -12.14980 -11.78235 -11.52439 -11.36138 -10.84934 -10.53580 -10.24950 -9.86815 -8.27014 -6.44234 -0.46087 0.08644 1.42845 1.46624 1.51998 1.54640 1.86361 2.40734 2.59752 3.02873 3.18592 3.65998 3.74748 3.99752 4.04259 4.23356 4.35072 4.37219 4.49085 4.67489 4.81003 4.91448 5.00813 5.06275 5.18800 5.19930 5.23078 5.35076 5.50494 5.65063 5.74564 5.93395 6.08095 6.59330 6.90514 7.26707 8.79742 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.034277 B = 0.005233 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.677062 B = 5349.551606 C = 5808.510029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.006 0.994 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.982 3.018 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.262 1.262 13 O -0.351 6.351 14 C 0.490 3.510 15 O -0.541 6.541 16 C -0.111 4.111 17 C -0.074 4.074 18 C -0.086 4.086 19 C -0.105 4.105 20 C 0.078 3.922 21 F -0.139 7.139 22 C -0.109 4.109 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.271 0.729 29 H 0.148 0.852 30 H 0.185 0.815 31 H 0.179 0.821 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.304 6.102 -15.040 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.024 0.976 5 C -0.587 4.587 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.805 3.195 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.187 1.187 13 O -0.267 6.267 14 C 0.336 3.664 15 O -0.434 6.434 16 C -0.113 4.113 17 C -0.092 4.092 18 C -0.104 4.104 19 C -0.123 4.123 20 C 0.059 3.941 21 F -0.118 7.118 22 C -0.128 4.128 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.166 0.834 30 H 0.202 0.798 31 H 0.197 0.803 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.509 5.999 -14.543 16.668 hybrid contribution 0.292 -0.066 1.098 1.138 sum -5.217 5.933 -13.445 15.594 Atomic orbital electron populations 1.21724 0.96511 1.00644 0.99949 1.21875 0.94255 0.98021 1.02566 1.20449 0.94761 0.89287 0.78335 0.97626 1.21288 0.90220 1.40135 1.07079 0.91260 1.25806 1.04262 0.93811 0.94305 1.70008 1.37580 1.37832 1.09867 0.85251 0.77600 0.78759 0.77912 1.19425 1.20385 1.18685 1.86497 1.34808 1.62774 1.42655 1.21670 0.80042 0.76251 0.88409 1.90761 1.56089 1.59662 1.36863 1.19016 0.96652 1.02859 0.92743 1.21829 0.99558 0.96479 0.91328 1.21473 0.95492 0.94834 0.98577 1.21835 0.93997 0.98812 0.97685 1.17545 0.83372 0.97915 0.95238 1.91509 1.43417 1.79837 1.97051 1.21156 0.95758 0.97028 0.98826 0.94642 0.94716 0.91852 0.93243 0.89392 0.92021 0.83416 0.79753 0.80327 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 8.56 71.98 0.62 -5.24 16 2 C -0.13 -6.52 5.49 30.60 0.17 -6.35 16 3 C 0.22 12.26 2.25 29.85 0.07 12.33 16 4 H 0.01 0.37 7.16 -2.39 -0.02 0.35 16 5 C -0.55 -30.83 8.90 25.60 0.23 -30.61 16 6 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.92 -52.19 11.29 21.45 0.24 -51.95 16 9 Si 0.98 42.31 29.54 68.60 2.03 44.34 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 13 O -0.35 -16.81 9.06 -56.19 -0.51 -17.32 16 14 C 0.49 21.38 6.35 70.33 0.45 21.82 16 15 O -0.54 -26.59 13.53 19.92 0.27 -26.32 16 16 C -0.11 -3.66 5.87 -20.10 -0.12 -3.78 16 17 C -0.07 -1.84 9.61 22.54 0.22 -1.62 16 18 C -0.09 -1.38 10.03 22.22 0.22 -1.16 16 19 C -0.10 -1.68 10.02 22.37 0.22 -1.46 16 20 C 0.08 1.82 7.29 22.34 0.16 1.98 16 21 F -0.14 -3.29 17.26 44.97 0.78 -2.52 16 22 C -0.11 -3.21 9.57 22.59 0.22 -2.99 16 23 H 0.03 1.68 7.79 -2.39 -0.02 1.66 16 24 H 0.03 1.50 6.06 -2.39 -0.01 1.48 16 25 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.09 4.84 5.95 -2.39 -0.01 4.82 16 28 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.15 3.70 7.61 -2.91 -0.02 3.67 16 30 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.13 4.21 7.65 -2.91 -0.02 4.19 16 Total: -1.00 -66.61 281.98 6.84 -59.77 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.13 Total: 9.64 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 2.90 Total: -15.64 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.24 Total: -51.95 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -0.24 Total: -43.64 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.78 Total: -2.52 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -66.61 6.84 -59.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188091468.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.539 kcal (2) G-P(sol) polarization free energy of solvation -66.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds