Wall clock time and date at job start Sun Mar 29 2020 23:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 116.99952 * 2 1 4 4 C 1.38831 * 120.01544 * 359.97438 * 3 2 1 5 5 C 1.38195 * 120.10271 * 180.02562 * 4 3 2 6 6 C 1.38133 * 120.13671 * 0.03858 * 5 4 3 7 7 C 1.39002 * 120.02758 * 359.97438 * 6 5 4 8 8 S 1.76199 * 120.04883 * 179.97438 * 7 6 5 9 9 C 1.81397 * 103.00150 * 353.78134 * 8 7 6 10 10 H 1.08999 * 109.47215 * 50.12960 * 9 8 7 11 11 C 1.52999 * 109.46967 * 290.13108 * 9 8 7 12 12 C 1.52998 * 109.47215 * 170.13136 * 9 8 7 13 13 C 1.50704 * 109.47093 * 295.00198 * 12 9 8 14 14 H 1.07997 * 119.99915 * 359.97438 * 13 12 9 15 15 C 1.37877 * 120.00079 * 179.97438 * 13 12 9 16 16 N 1.31514 * 120.00090 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00097 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47354 * 89.99642 * 17 15 13 19 19 H 1.48494 * 109.47257 * 210.00320 * 17 15 13 20 20 H 1.48503 * 109.46777 * 330.00031 * 17 15 13 21 21 C 1.38554 * 120.01374 * 180.02562 * 3 2 1 22 22 H 1.09006 * 109.46973 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47373 * 300.00294 * 1 2 3 24 24 H 1.08998 * 109.46998 * 60.00229 * 1 2 3 25 25 H 1.08000 * 119.94595 * 0.02562 * 4 3 2 26 26 H 1.07994 * 119.93040 * 180.02562 * 5 4 3 27 27 H 1.07994 * 119.98654 * 179.69970 * 6 5 4 28 28 H 1.08999 * 109.47126 * 54.61805 * 11 9 8 29 29 H 1.09003 * 109.46915 * 174.61837 * 11 9 8 30 30 H 1.09002 * 109.47362 * 294.61681 * 11 9 8 31 31 H 1.08999 * 109.47104 * 54.99747 * 12 9 8 32 32 H 1.09000 * 109.47174 * 174.99898 * 12 9 8 33 33 H 0.97003 * 119.99990 * 179.97438 * 16 15 13 34 34 H 1.07994 * 120.07109 * 359.96135 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2901 2.3754 -0.0005 5 6 1.9156 3.6076 -0.0011 6 6 3.2948 3.6853 -0.0019 7 6 4.0569 2.5229 -0.0016 8 16 5.8162 2.6214 -0.0033 9 6 6.1253 4.3983 -0.1966 10 1 5.5340 4.9515 0.5332 11 6 5.7299 4.8341 -1.6089 12 6 7.6112 4.6849 0.0284 13 6 7.9728 4.3704 1.4572 14 1 7.2181 4.0032 2.1369 15 6 9.2671 4.5514 1.8967 16 7 9.5825 4.2773 3.1437 17 14 10.5726 5.1858 0.7208 18 1 10.6100 6.6693 0.7763 19 1 11.8978 4.6422 1.1125 20 1 10.2478 4.7501 -0.6612 21 6 3.4295 1.2837 -0.0005 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2116 2.3181 -0.0005 26 1 1.3249 4.5117 -0.0011 27 1 3.7810 4.6496 -0.0072 28 1 4.6975 4.5435 -1.8031 29 1 5.8251 5.9165 -1.6951 30 1 6.3856 4.3528 -2.3346 31 1 8.2064 4.0648 -0.6419 32 1 7.8132 5.7367 -0.1744 33 1 10.4932 4.4043 3.4527 34 1 4.0191 0.3788 -0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188292688.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:45 Heat of formation + Delta-G solvation = -22.646482 kcal Electronic energy + Delta-G solvation = -15765.647050 eV Core-core repulsion = 13175.844652 eV Total energy + Delta-G solvation = -2589.802398 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.94098 -37.27267 -34.83280 -32.19641 -30.99645 -30.06294 -28.01595 -27.31830 -23.23104 -22.76927 -22.06234 -20.41284 -18.37903 -16.77138 -16.29541 -15.93247 -15.78144 -15.71920 -14.86233 -14.26242 -13.81260 -13.43513 -13.18123 -12.74984 -12.66039 -12.44449 -12.25032 -11.89634 -11.71587 -11.33456 -11.14574 -11.02343 -10.87004 -10.35301 -10.01271 -9.74367 -9.50877 -9.30945 -9.22014 -8.56309 -8.20013 -6.84018 -6.05159 -4.04228 1.37322 1.55976 2.06290 3.08595 3.28108 3.32038 3.36751 3.38637 3.83413 4.42360 4.80943 5.00819 5.03018 5.05976 5.27595 5.30579 5.35508 5.45451 5.51095 5.55208 5.64960 5.82548 6.01707 6.17917 6.33029 6.36067 6.43514 6.52425 6.55565 6.71453 6.95871 7.13681 7.43159 7.67915 8.49002 9.01441 9.54986 11.07582 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.041355 B = 0.004785 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.910084 B = 5850.518092 C = 6124.734036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.141 3.859 4 C -0.229 4.229 5 C -0.063 4.063 6 C -0.175 4.175 7 C -0.043 4.043 8 S -0.067 6.067 9 C -0.061 4.061 10 H 0.089 0.911 11 C -0.152 4.152 12 C 0.003 3.997 13 C -0.521 4.521 14 H 0.081 0.919 15 C 0.071 3.929 16 N -0.898 5.898 17 Si 0.874 3.126 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.143 4.143 22 H 0.097 0.903 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.129 0.871 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.026 0.974 32 H 0.031 0.969 33 H 0.263 0.737 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.730 -3.212 -8.771 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.094 3.906 4 C -0.251 4.251 5 C -0.083 4.083 6 C -0.199 4.199 7 C -0.157 4.157 8 S 0.183 5.817 9 C -0.190 4.190 10 H 0.107 0.893 11 C -0.211 4.211 12 C -0.036 4.036 13 C -0.560 4.560 14 H 0.099 0.901 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.701 3.299 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.190 1.190 21 C -0.169 4.169 22 H 0.115 0.885 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.147 0.853 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.488 -4.235 -8.539 18.186 hybrid contribution -0.462 1.525 -0.491 1.667 sum -15.950 -2.710 -9.030 18.528 Atomic orbital electron populations 1.23010 0.78735 1.03606 1.01248 1.86061 1.21092 1.27161 1.88882 1.18810 0.91844 0.83955 0.96017 1.21082 0.99514 0.92391 1.12093 1.20782 0.94117 0.96807 0.96556 1.21225 0.94101 0.97712 1.06887 1.22021 0.99723 0.95065 0.98910 1.85995 0.94754 1.12555 1.88409 1.23509 1.04000 0.92670 0.98822 0.89309 1.22224 1.01272 1.01488 0.96132 1.19501 0.87996 0.97010 0.99043 1.21123 0.96432 1.44418 0.93989 0.90062 1.24972 0.98311 0.94911 0.94879 1.69905 1.19511 1.48754 1.15430 0.86877 0.81546 0.79360 0.82138 1.20271 1.21231 1.18991 1.19895 0.91127 0.97111 1.08719 0.88487 0.92736 0.92818 0.85878 0.85954 0.85299 0.92670 0.91943 0.91832 0.95575 0.95113 0.92676 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.17 10.49 -19.41 -0.20 -4.38 16 3 C 0.14 2.04 6.68 -39.25 -0.26 1.78 16 4 C -0.23 -2.91 9.04 -39.38 -0.36 -3.27 16 5 C -0.06 -0.82 10.03 -39.64 -0.40 -1.22 16 6 C -0.17 -2.70 8.04 -39.34 -0.32 -3.02 16 7 C -0.04 -0.74 5.97 -39.05 -0.23 -0.98 16 8 S -0.07 -1.31 20.61 -107.50 -2.22 -3.53 16 9 C -0.06 -1.18 1.98 -26.73 -0.05 -1.24 16 10 H 0.09 1.72 6.84 -51.92 -0.36 1.37 16 11 C -0.15 -2.37 8.71 37.16 0.32 -2.05 16 12 C 0.00 0.07 3.52 -27.88 -0.10 -0.03 16 13 C -0.52 -14.49 9.09 -34.44 -0.31 -14.80 16 14 H 0.08 2.46 7.84 -52.49 -0.41 2.05 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 17 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 21 C -0.14 -2.33 9.73 -39.22 -0.38 -2.71 16 22 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 24 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 25 H 0.12 1.21 6.29 -52.49 -0.33 0.88 16 26 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 27 H 0.13 1.94 4.98 -52.49 -0.26 1.68 16 28 H 0.05 0.79 6.10 -51.93 -0.32 0.47 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 32 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 292.35 15.07 4.41 4.41 Total: -1.00 -31.04 292.35 -7.62 -38.67 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.52 Total: -0.73 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -1.19 Total: -24.36 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.77 Total: -26.72 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.20 Total: -4.38 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.22 Total: -3.53 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.04 -7.62 -38.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188292688.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.019 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds