Wall clock time and date at job start Sun Mar 29 2020 22:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38331 * 119.91408 * 2 1 4 4 C 1.38056 * 120.08012 * 180.02562 * 3 2 1 5 5 C 1.38997 * 119.91807 * 359.97438 * 4 3 2 6 6 S 1.76201 * 120.08053 * 180.02562 * 5 4 3 7 7 C 1.81404 * 103.00133 * 0.02562 * 6 5 4 8 8 C 1.52997 * 109.47257 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47153 * 304.99667 * 8 7 6 10 10 O 1.42898 * 109.47319 * 64.99975 * 8 7 6 11 11 C 1.50699 * 109.47078 * 184.99874 * 8 7 6 12 12 H 1.07999 * 120.00019 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00129 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99723 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99900 * 179.97438 * 13 11 8 16 16 H 1.48491 * 109.47312 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46948 * 119.99892 * 15 13 11 18 18 H 1.48500 * 109.46809 * 239.99811 * 15 13 11 19 19 C 1.38958 * 119.84239 * 0.27531 * 5 4 3 20 20 C 1.38098 * 119.91334 * 359.49239 * 19 5 4 21 21 C 1.50702 * 119.96139 * 180.22907 * 20 19 5 22 22 H 1.09000 * 109.47217 * 90.00533 * 1 2 3 23 23 H 1.09004 * 109.46675 * 209.99588 * 1 2 3 24 24 H 1.08994 * 109.47565 * 329.99327 * 1 2 3 25 25 H 1.07998 * 119.95929 * 0.02562 * 3 2 1 26 26 H 1.07993 * 120.04409 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.46988 * 59.99392 * 7 6 5 28 28 H 1.09004 * 109.46649 * 300.00083 * 7 6 5 29 29 H 0.96698 * 113.99898 * 59.99520 * 10 8 7 30 30 H 0.97003 * 119.99231 * 179.97438 * 14 13 11 31 31 H 1.07997 * 120.03994 * 179.71937 * 19 5 4 32 32 H 1.08996 * 109.47226 * 270.26184 * 21 20 19 33 33 H 1.09007 * 109.46521 * 30.25311 * 21 20 19 34 34 H 1.08995 * 109.47561 * 150.25022 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1990 0.0000 4 6 3.5774 1.2030 -0.0005 5 6 4.2742 0.0003 -0.0005 6 16 6.0362 0.0004 -0.0005 7 6 6.4442 1.7680 0.0003 8 6 7.9644 1.9405 -0.0003 9 1 8.3922 1.3954 0.8411 10 8 8.5014 1.4291 -1.2218 11 6 8.3039 3.4034 0.1241 12 1 7.5144 4.1368 0.1960 13 6 9.6225 3.8058 0.1452 14 7 10.5840 2.9127 0.0572 15 14 10.0434 5.6193 0.2988 16 1 8.7910 6.4129 0.3806 17 1 10.8497 5.8381 1.5265 18 1 10.8241 6.0485 -0.8893 19 6 3.5778 -1.2022 -0.0058 20 6 2.1969 -1.1984 -0.0004 21 6 1.4406 -2.5019 -0.0009 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8898 0.5139 25 1 1.6548 2.1331 0.0004 26 1 4.1154 2.1394 -0.0010 27 1 6.0251 2.2372 0.8904 28 1 6.0252 2.2379 -0.8896 29 1 8.1640 1.8687 -2.0143 30 1 11.5116 3.1958 0.0717 31 1 4.1160 -2.1386 -0.0104 32 1 1.2583 -2.8159 -1.0286 33 1 2.0283 -3.2630 0.5127 34 1 0.4886 -2.3699 0.5131 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221575355.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:34 Heat of formation + Delta-G solvation = -45.197395 kcal Electronic energy + Delta-G solvation = -15585.487818 eV Core-core repulsion = 12994.707539 eV Total energy + Delta-G solvation = -2590.780279 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.32375 -35.95217 -33.40191 -32.22235 -32.07956 -29.83385 -27.59725 -26.56471 -25.26674 -22.20144 -20.97504 -20.86884 -17.27739 -16.84558 -15.68483 -15.35603 -14.69685 -14.44890 -14.41018 -14.24735 -13.99454 -13.35910 -13.03387 -12.88014 -12.74813 -12.37871 -12.18436 -11.95858 -11.51103 -11.29012 -11.18767 -10.97008 -10.92962 -10.65592 -10.13537 -9.70934 -9.20563 -9.17415 -8.67273 -8.64747 -8.32730 -6.89158 -6.10830 -4.31273 1.35251 1.47639 2.07683 3.07012 3.21916 3.30469 3.33418 3.75441 4.31891 4.79136 4.86052 5.04268 5.08924 5.16292 5.33662 5.40675 5.48677 5.58500 5.73208 5.73665 5.75386 5.78371 5.90712 6.07760 6.16564 6.21051 6.46469 6.48235 6.57941 6.69344 7.05571 7.53020 7.71669 7.99508 8.70283 9.26545 9.45900 10.93235 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.043299 B = 0.004383 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.517932 B = 6387.282461 C = 6920.348120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.108 4.108 3 C -0.097 4.097 4 C -0.139 4.139 5 C -0.078 4.078 6 S -0.117 6.117 7 C -0.118 4.118 8 C 0.246 3.754 9 H 0.067 0.933 10 O -0.557 6.557 11 C -0.572 4.572 12 H 0.059 0.941 13 C 0.081 3.919 14 N -0.855 5.855 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.106 4.106 20 C -0.073 4.073 21 C -0.115 4.115 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.120 0.880 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.347 0.653 30 H 0.262 0.738 31 H 0.124 0.876 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.605 -6.016 -0.397 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.112 4.112 3 C -0.117 4.117 4 C -0.163 4.163 5 C -0.191 4.191 6 S 0.130 5.870 7 C -0.267 4.267 8 C 0.186 3.814 9 H 0.084 0.916 10 O -0.359 6.359 11 C -0.611 4.611 12 H 0.077 0.923 13 C -0.126 4.126 14 N -0.490 5.490 15 Si 0.721 3.279 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.130 4.130 20 C -0.075 4.075 21 C -0.171 4.171 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.138 0.862 26 H 0.143 0.857 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.191 0.809 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.168 -7.362 0.026 17.765 hybrid contribution -0.865 2.596 -0.229 2.746 sum -17.034 -4.767 -0.202 17.689 Atomic orbital electron populations 1.20792 0.91550 1.02480 1.01974 1.19662 0.95704 0.92642 1.03160 1.20879 0.93667 0.97328 0.99816 1.21252 0.94660 0.97109 1.03293 1.22118 0.98819 0.96012 1.02167 1.85845 0.95813 1.14669 1.90627 1.24912 1.06357 0.91105 1.04312 1.19182 0.81896 0.94545 0.85738 0.91582 1.86607 1.71132 1.62839 1.15327 1.21543 0.92489 0.91884 1.55223 0.92279 1.25041 0.96319 0.97693 0.93572 1.70095 0.99645 1.33156 1.46102 0.86527 0.78577 0.84897 0.77878 1.19643 1.20717 1.20731 1.20602 0.93057 0.96562 1.02769 1.19613 0.93132 0.94824 0.99903 1.20840 0.99921 0.94123 1.02242 0.91538 0.91421 0.91918 0.86174 0.85682 0.89914 0.90566 0.80934 0.92773 0.85799 0.91233 0.91626 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.60 36.01 0.35 -0.64 16 2 C -0.11 -1.34 5.88 -104.57 -0.62 -1.95 16 3 C -0.10 -1.30 9.69 -39.61 -0.38 -1.68 16 4 C -0.14 -2.18 9.36 -39.37 -0.37 -2.54 16 5 C -0.08 -1.31 6.11 -39.03 -0.24 -1.54 16 6 S -0.12 -2.25 21.71 -107.50 -2.33 -4.58 16 7 C -0.12 -2.42 3.94 37.16 0.15 -2.27 16 8 C 0.25 6.16 2.82 -27.88 -0.08 6.08 16 9 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 10 O -0.56 -14.25 12.48 -35.23 -0.44 -14.69 16 11 C -0.57 -15.31 8.76 -34.44 -0.30 -15.61 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 14 N -0.85 -24.93 12.84 55.43 0.71 -24.21 16 15 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 19 C -0.11 -1.57 9.45 -39.37 -0.37 -1.94 16 20 C -0.07 -0.93 5.88 -104.66 -0.62 -1.54 16 21 C -0.11 -1.06 9.60 36.01 0.35 -0.72 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.52 5.94 -51.93 -0.31 0.21 16 24 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 25 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 26 H 0.13 1.96 5.88 -52.49 -0.31 1.65 16 27 H 0.08 1.64 7.75 -51.92 -0.40 1.23 16 28 H 0.08 1.48 7.75 -51.92 -0.40 1.08 16 29 H 0.35 7.85 9.04 45.56 0.41 8.26 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 31 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.57 8.09 -51.92 -0.42 0.15 16 34 H 0.07 0.54 5.94 -51.93 -0.31 0.23 16 LS Contribution 299.43 15.07 4.51 4.51 Total: -1.00 -30.07 299.43 -8.62 -38.69 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -3.81 Total: 6.83 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -2.23 Total: -22.25 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.71 Total: -24.21 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.44 Total: -14.69 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -2.25 SS G_CDS: -2.33 Total: -4.58 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.07 -8.62 -38.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221575355.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.508 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds