Wall clock time and date at job start Sun Mar 29 2020 22:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38328 * 119.96081 * 2 1 4 4 C 1.38278 * 120.15815 * 180.25314 * 3 2 1 5 5 C 1.38105 * 120.08327 * 359.45017 * 4 3 2 6 6 C 1.50702 * 120.04230 * 180.27948 * 5 4 3 7 7 C 1.38952 * 119.91525 * 0.54383 * 5 4 3 8 8 S 1.76199 * 120.07841 * 179.70651 * 7 5 4 9 9 C 1.81398 * 103.00079 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47244 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47216 * 60.00094 * 10 9 8 12 12 O 1.42897 * 109.47330 * 299.99653 * 10 9 8 13 13 C 1.50704 * 109.47305 * 179.97438 * 10 9 8 14 14 H 1.08006 * 119.99799 * 0.02562 * 13 10 9 15 15 C 1.37880 * 120.00220 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99685 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99930 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46923 * 60.00181 * 17 15 13 19 19 H 1.48504 * 109.46851 * 180.02562 * 17 15 13 20 20 H 1.48491 * 109.47182 * 300.00312 * 17 15 13 21 21 C 1.38060 * 119.95688 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.47181 * 89.99942 * 1 2 3 23 23 H 1.09001 * 109.47068 * 210.00305 * 1 2 3 24 24 H 1.09006 * 109.47153 * 330.00437 * 1 2 3 25 25 H 1.08002 * 119.91659 * 359.97231 * 3 2 1 26 26 H 1.07998 * 119.95693 * 179.69898 * 4 3 2 27 27 H 1.08996 * 109.46512 * 270.26881 * 6 5 4 28 28 H 1.08998 * 109.46615 * 30.26546 * 6 5 4 29 29 H 1.08993 * 109.47255 * 150.27007 * 6 5 4 30 30 H 1.09000 * 109.47049 * 300.00212 * 9 8 7 31 31 H 1.08999 * 109.47399 * 59.99876 * 9 8 7 32 32 H 0.96702 * 114.00011 * 300.00506 * 12 10 9 33 33 H 0.97003 * 119.99681 * 179.97438 * 16 15 13 34 34 H 1.07997 * 120.04197 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1984 0.0000 4 6 3.5806 1.2032 -0.0053 5 6 4.2770 0.0106 0.0009 6 6 5.7840 0.0169 0.0015 7 6 3.5864 -1.1952 0.0010 8 16 4.4706 -2.7192 0.0010 9 6 3.1465 -3.9592 0.0004 10 6 3.7602 -5.3606 0.0010 11 1 4.3760 -5.4872 0.8914 12 8 4.5690 -5.5270 -1.1652 13 6 2.6602 -6.3908 0.0011 14 1 1.6267 -6.0771 0.0003 15 6 2.9732 -7.7336 0.0011 16 7 4.2317 -8.1154 0.0015 17 14 1.6096 -9.0104 0.0005 18 1 0.7703 -8.8376 -1.2124 19 1 2.2053 -10.3707 0.0012 20 1 0.7694 -8.8378 1.2126 21 6 2.1964 -1.1962 0.0005 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8901 0.5138 25 1 1.6558 2.1326 -0.0005 26 1 4.1166 2.1407 -0.0102 27 1 6.1476 0.0182 -1.0260 28 1 6.1433 0.9086 0.5152 29 1 6.1509 -0.8714 0.5156 30 1 2.5298 -3.8326 0.8901 31 1 2.5304 -3.8323 -0.8898 32 1 4.0855 -5.4276 -1.9967 33 1 4.4518 -9.0601 0.0019 34 1 1.6564 -2.1314 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221575573.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:09 Heat of formation + Delta-G solvation = -65.164084 kcal Electronic energy + Delta-G solvation = -15794.169366 eV Core-core repulsion = 13202.523266 eV Total energy + Delta-G solvation = -2591.646100 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24940 -37.94403 -34.78749 -34.31942 -32.35839 -31.38084 -30.11779 -27.39495 -25.75041 -23.86625 -23.36129 -21.57912 -19.28717 -17.79199 -16.77905 -16.71313 -16.64182 -16.25249 -16.09759 -15.34585 -15.01962 -14.99344 -14.13710 -14.07315 -13.70605 -13.52078 -13.40459 -13.27757 -12.89855 -12.77847 -12.74539 -12.54841 -12.36383 -12.07944 -11.85694 -11.34740 -10.88942 -10.72990 -10.55783 -10.33193 -9.50801 -8.31554 -8.18884 -6.47137 0.29903 0.39493 0.65229 1.40718 1.42298 1.50849 1.62170 2.37245 2.71342 3.07321 3.85945 3.91787 4.03129 4.09742 4.13731 4.26099 4.32050 4.42631 4.59441 4.72768 4.77616 4.80876 4.81811 4.86271 5.00318 5.13537 5.32238 5.37663 5.47729 5.57929 5.61159 5.64220 5.93691 6.06047 6.62014 7.25489 7.43383 8.85611 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.029423 B = 0.005319 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.405683 B = 5263.247130 C = 6112.668458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.082 4.082 3 C -0.128 4.128 4 C -0.100 4.100 5 C -0.093 4.093 6 C -0.113 4.113 7 C -0.101 4.101 8 S -0.130 6.130 9 C -0.107 4.107 10 C 0.248 3.752 11 H 0.028 0.972 12 O -0.571 6.571 13 C -0.586 4.586 14 H 0.065 0.935 15 C 0.028 3.972 16 N -0.898 5.898 17 Si 0.966 3.034 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.267 1.267 21 C -0.153 4.153 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.154 0.846 26 H 0.156 0.844 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.358 0.642 33 H 0.264 0.736 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.092 18.604 -0.551 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.148 4.148 4 C -0.120 4.120 5 C -0.100 4.100 6 C -0.170 4.170 7 C -0.214 4.214 8 S 0.116 5.884 9 C -0.255 4.255 10 C 0.189 3.811 11 H 0.045 0.955 12 O -0.375 6.375 13 C -0.626 4.626 14 H 0.083 0.917 15 C -0.175 4.175 16 N -0.534 5.534 17 Si 0.790 3.210 18 H -0.190 1.190 19 H -0.209 1.209 20 H -0.192 1.192 21 C -0.178 4.178 22 H 0.097 0.903 23 H 0.080 0.920 24 H 0.106 0.894 25 H 0.171 0.829 26 H 0.173 0.827 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.203 0.797 33 H 0.073 0.927 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.264 18.025 -0.085 18.319 hybrid contribution -2.197 -0.924 -0.270 2.398 sum -5.460 17.101 -0.355 17.956 Atomic orbital electron populations 1.20838 0.89290 1.03582 1.03140 1.20149 0.97421 0.92412 0.98391 1.21379 0.94265 0.98032 1.01174 1.21303 0.94505 0.97307 0.98856 1.19854 0.96991 0.91343 1.01763 1.20788 0.90005 1.03168 1.02989 1.22035 0.96705 0.97083 1.05580 1.85718 1.15142 0.95905 1.91589 1.24476 0.98972 0.97601 1.04483 1.18907 0.89637 0.87006 0.85549 0.95463 1.86541 1.40161 1.94901 1.15892 1.21868 0.93397 0.91974 1.55322 0.91715 1.25933 0.97733 1.00827 0.93013 1.70215 1.18973 1.16606 1.47607 0.85519 0.78876 0.77411 0.79231 1.18999 1.20889 1.19206 1.21226 0.92562 0.99154 1.04812 0.90265 0.92027 0.89357 0.82859 0.82665 0.90522 0.88884 0.92684 0.90067 0.90011 0.79738 0.92705 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 10.01 71.24 0.71 -1.34 16 2 C -0.08 -2.02 5.88 -19.89 -0.12 -2.13 16 3 C -0.13 -2.66 9.70 22.30 0.22 -2.44 16 4 C -0.10 -2.18 9.70 22.25 0.22 -1.97 16 5 C -0.09 -2.60 5.90 -19.72 -0.12 -2.72 16 6 C -0.11 -2.73 9.57 71.24 0.68 -2.05 16 7 C -0.10 -3.37 6.11 22.62 0.14 -3.23 16 8 S -0.13 -5.08 19.77 -56.49 -1.12 -6.20 16 9 C -0.11 -4.52 3.97 71.98 0.29 -4.23 16 10 C 0.25 12.89 2.87 29.85 0.09 12.98 16 11 H 0.03 1.61 8.14 -2.39 -0.02 1.60 16 12 O -0.57 -30.21 12.33 -148.98 -1.84 -32.05 16 13 C -0.59 -31.93 8.76 25.60 0.22 -31.71 16 14 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 15 C 0.03 1.57 5.40 84.66 0.46 2.02 16 16 N -0.90 -53.60 12.84 21.45 0.28 -53.33 16 17 Si 0.97 42.72 29.54 68.60 2.03 44.74 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 C -0.15 -4.78 9.02 22.41 0.20 -4.58 16 22 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 23 H 0.06 1.19 8.08 -2.39 -0.02 1.17 16 24 H 0.09 1.20 8.09 -2.38 -0.02 1.19 16 25 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 26 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 1.68 8.09 -2.39 -0.02 1.66 16 29 H 0.05 1.55 6.79 -2.39 -0.02 1.54 16 30 H 0.08 3.34 7.75 -2.39 -0.02 3.32 16 31 H 0.08 3.29 7.75 -2.39 -0.02 3.27 16 32 H 0.36 16.74 9.04 -74.06 -0.67 16.07 16 33 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.11 3.67 5.88 -2.91 -0.02 3.66 16 Total: -1.00 -65.56 300.73 2.76 -62.80 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.42 Total: 25.42 kcal Atomic # 6 Polarization: -44.38 SS G_CDS: 2.99 Total: -41.40 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.28 Total: -53.33 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -1.84 Total: -32.05 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: -5.08 SS G_CDS: -1.12 Total: -6.20 kcal Total: -65.56 2.76 -62.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221575573.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.362 kcal (2) G-P(sol) polarization free energy of solvation -65.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds